Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/DicomModification.h @ 4792:434843934307 storage-cache
Added a StorageCache in the StorageAccessor
author | Alain Mazy <am@osimis.io> |
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date | Thu, 30 Sep 2021 12:14:19 +0200 |
parents | 51ec061516c9 |
children | 7053502fbf97 |
rev | line source |
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4297 | 1 /** |
786 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
786 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
786 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
786 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
786 | 20 **/ |
21 | |
22 | |
23 #pragma once | |
24 | |
790 | 25 #include "ParsedDicomFile.h" |
786 | 26 |
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27 #include <list> |
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28 |
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29 |
786 | 30 namespace Orthanc |
31 { | |
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32 class ORTHANC_PUBLIC DicomModification : public boost::noncopyable |
786 | 33 { |
34 /** | |
35 * Process: | |
36 * (1) Remove private tags | |
37 * (2) Remove tags specified by the user | |
38 * (3) Replace tags | |
39 **/ | |
40 | |
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41 public: |
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42 class IDicomIdentifierGenerator : public boost::noncopyable |
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DicomModification::SetDicomIdentifierGenerator()
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43 { |
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44 public: |
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45 virtual ~IDicomIdentifierGenerator() |
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46 { |
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DicomModification::SetDicomIdentifierGenerator()
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47 } |
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48 |
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49 virtual bool Apply(std::string& target, |
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50 const std::string& sourceIdentifier, |
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51 ResourceType level, |
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52 const DicomMap& sourceDicom) = 0; |
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53 }; |
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54 |
786 | 55 private: |
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56 class RelationshipsVisitor; |
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57 |
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58 class DicomTagRange |
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59 { |
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60 private: |
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61 uint16_t groupFrom_; |
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62 uint16_t groupTo_; |
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63 uint16_t elementFrom_; |
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64 uint16_t elementTo_; |
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65 |
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66 public: |
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67 DicomTagRange(uint16_t groupFrom, |
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68 uint16_t groupTo, |
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69 uint16_t elementFrom, |
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70 uint16_t elementTo); |
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71 |
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72 uint16_t GetGroupFrom() const |
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73 { |
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74 return groupFrom_; |
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75 } |
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76 |
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77 uint16_t GetGroupTo() const |
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78 { |
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79 return groupTo_; |
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80 } |
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81 |
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82 uint16_t GetElementFrom() const |
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83 { |
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84 return elementFrom_; |
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85 } |
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86 |
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87 uint16_t GetElementTo() const |
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88 { |
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89 return elementTo_; |
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90 } |
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91 |
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92 bool Contains(const DicomTag& tag) const; |
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93 }; |
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94 |
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95 class SequenceReplacement : public boost::noncopyable |
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96 { |
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97 private: |
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98 DicomPath path_; |
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99 Json::Value value_; |
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100 |
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101 public: |
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102 SequenceReplacement(const DicomPath& path, |
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103 const Json::Value& value) : |
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104 path_(path), |
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105 value_(value) |
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106 { |
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107 } |
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108 |
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109 const DicomPath& GetPath() const |
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110 { |
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111 return path_; |
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112 } |
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113 |
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114 const Json::Value& GetValue() const |
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115 { |
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116 return value_; |
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117 } |
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118 }; |
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119 |
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120 typedef std::set<DicomTag> SetOfTags; |
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121 typedef std::map<DicomTag, Json::Value*> Replacements; |
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122 typedef std::list<DicomTagRange> RemovedRanges; |
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123 typedef std::list<DicomPath> ListOfPaths; |
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124 typedef std::list<SequenceReplacement*> SequenceReplacements; |
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125 |
788 | 126 typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap; |
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127 |
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128 SetOfTags removals_; |
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129 SetOfTags clearings_; |
786 | 130 Replacements replacements_; |
131 bool removePrivateTags_; | |
788 | 132 ResourceType level_; |
786 | 133 UidMap uidMap_; |
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134 SetOfTags privateTagsToKeep_; |
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135 bool allowManualIdentifiers_; |
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136 bool keepStudyInstanceUid_; |
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137 bool keepSeriesInstanceUid_; |
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138 bool keepSopInstanceUid_; |
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139 bool updateReferencedRelationships_; |
2721 | 140 bool isAnonymization_; |
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141 DicomMap currentSource_; |
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142 std::string privateCreator_; |
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143 |
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144 IDicomIdentifierGenerator* identifierGenerator_; |
786 | 145 |
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146 // New in Orthanc 1.9.4 |
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147 SetOfTags uids_; |
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148 RemovedRanges removedRanges_; |
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149 ListOfPaths keepSequences_; // Can *possibly* be a path whose prefix is empty |
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150 ListOfPaths removeSequences_; // Must *never* be a path whose prefix is empty |
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151 SequenceReplacements sequenceReplacements_; // Must *never* be a path whose prefix is empty |
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152 |
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153 std::string MapDicomIdentifier(const std::string& original, |
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154 ResourceType level); |
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155 |
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156 void RegisterMappedDicomIdentifier(const std::string& original, |
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157 const std::string& mapped, |
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158 ResourceType level); |
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159 |
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160 void MapDicomTags(ParsedDicomFile& dicom, |
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161 ResourceType level); |
786 | 162 |
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163 void MarkNotOrthancAnonymization(); |
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164 |
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165 void ClearReplacements(); |
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166 |
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167 void CancelReplacement(const DicomTag& tag); |
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168 |
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169 void ReplaceInternal(const DicomTag& tag, |
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170 const Json::Value& value); |
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171 |
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172 void SetupUidsFromOrthanc_1_9_3(); |
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173 |
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174 void SetupAnonymization2008(); |
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175 |
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176 void SetupAnonymization2017c(); |
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177 |
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178 void SetupAnonymization2021b(); |
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179 |
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180 void UnserializeUidMap(ResourceType level, |
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181 const Json::Value& serialized, |
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182 const char* field); |
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183 |
786 | 184 public: |
185 DicomModification(); | |
186 | |
4200 | 187 explicit DicomModification(const Json::Value& serialized); |
2655 | 188 |
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189 ~DicomModification(); |
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190 |
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191 void Keep(const DicomTag& tag); |
786 | 192 |
193 void Remove(const DicomTag& tag); | |
194 | |
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195 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) |
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196 void Clear(const DicomTag& tag); |
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197 |
786 | 198 bool IsRemoved(const DicomTag& tag) const; |
199 | |
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200 bool IsCleared(const DicomTag& tag) const; |
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201 |
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202 // "safeForAnonymization" tells Orthanc that this replacement does |
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203 // not break the anonymization process it implements (for internal use only) |
786 | 204 void Replace(const DicomTag& tag, |
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205 const Json::Value& value, // Encoded using UTF-8 |
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206 bool safeForAnonymization); |
786 | 207 |
208 bool IsReplaced(const DicomTag& tag) const; | |
209 | |
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210 const Json::Value& GetReplacement(const DicomTag& tag) const; |
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211 |
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212 std::string GetReplacementAsString(const DicomTag& tag) const; |
786 | 213 |
214 void SetRemovePrivateTags(bool removed); | |
215 | |
4297 | 216 bool ArePrivateTagsRemoved() const; |
786 | 217 |
788 | 218 void SetLevel(ResourceType level); |
786 | 219 |
4297 | 220 ResourceType GetLevel() const; |
786 | 221 |
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222 void SetupAnonymization(DicomVersion version); |
786 | 223 |
224 void Apply(ParsedDicomFile& toModify); | |
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225 |
4297 | 226 void SetAllowManualIdentifiers(bool check); |
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227 |
4297 | 228 bool AreAllowManualIdentifiers() const; |
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229 |
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230 void ParseModifyRequest(const Json::Value& request); |
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231 |
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232 // "patientNameOverridden" is set to "true" iff. the PatientName |
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233 // (0010,0010) tag is manually replaced, removed, cleared or kept |
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234 void ParseAnonymizationRequest(bool& patientNameOverridden /* out */, |
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235 const Json::Value& request); |
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236 |
4297 | 237 void SetDicomIdentifierGenerator(IDicomIdentifierGenerator& generator); |
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238 |
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239 void Serialize(Json::Value& value) const; |
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240 |
4297 | 241 void SetPrivateCreator(const std::string& privateCreator); |
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242 |
4297 | 243 const std::string& GetPrivateCreator() const; |
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244 |
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245 // New in Orthanc 1.9.4 |
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246 void Keep(const DicomPath& path); |
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247 |
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248 // New in Orthanc 1.9.4 |
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249 void Remove(const DicomPath& path); |
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250 |
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251 // New in Orthanc 1.9.4 |
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252 void Replace(const DicomPath& path, |
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253 const Json::Value& value, // Encoded using UTF-8 |
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254 bool safeForAnonymization); |
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255 |
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256 bool IsAlteredTag(const DicomTag& tag) const; |
786 | 257 }; |
258 } |