Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerIndex.h @ 4565:3495a3d97ab6 db-changes
start of read-write transactions
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Mon, 08 Mar 2021 12:34:17 +0100 |
| parents | bb1c365f9e44 |
| children | b812a5f2cef3 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 136 | 11 * |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 0 | 23 * |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
| 4045 | 36 #include "../../OrthancFramework/Sources/Cache/LeastRecentlyUsedIndex.h" |
| 37 #include "../../OrthancFramework/Sources/DicomFormat/DicomMap.h" | |
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38 |
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39 #include "Database/IDatabaseWrapper.h" |
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40 #include "DicomInstanceOrigin.h" |
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41 |
| 0 | 42 #include <boost/thread.hpp> |
| 220 | 43 #include <boost/noncopyable.hpp> |
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44 |
| 62 | 45 namespace Orthanc |
| 0 | 46 { |
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47 class DatabaseLookup; |
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48 class ParsedDicomFile; |
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49 class ServerContext; |
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50 |
| 220 | 51 class ServerIndex : public boost::noncopyable |
| 0 | 52 { |
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53 public: |
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54 typedef std::list<FileInfo> Attachments; |
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55 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap; |
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56 |
| 0 | 57 private: |
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58 class Listener; |
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59 class Transaction; |
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60 class UnstableResourcePayload; |
| 3027 | 61 class MainDicomTagsRegistry; |
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62 |
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63 bool done_; |
| 0 | 64 boost::mutex mutex_; |
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65 boost::thread flushThread_; |
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66 boost::thread unstableResourcesMonitorThread_; |
| 0 | 67 |
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68 std::unique_ptr<Listener> listener_; |
| 1247 | 69 IDatabaseWrapper& db_; |
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70 LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_; |
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71 |
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72 uint64_t maximumStorageSize_; |
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73 unsigned int maximumPatients_; |
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74 std::unique_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_; |
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75 |
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76 static void FlushThread(ServerIndex* that, |
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77 unsigned int threadSleep); |
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78 |
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79 static void UnstableResourcesMonitorThread(ServerIndex* that, |
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80 unsigned int threadSleep); |
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81 |
| 4554 | 82 // A transaction must be running |
| 83 static void MainDicomTagsToJson(Json::Value& result, | |
| 84 IDatabaseWrapper& db, | |
| 85 int64_t resourceId, | |
| 86 ResourceType resourceType); | |
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87 |
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88 bool IsRecyclingNeeded(uint64_t instanceSize); |
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89 |
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90 void Recycle(uint64_t instanceSize, |
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91 const std::string& newPatientId); |
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92 |
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93 void StandaloneRecycling(); |
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94 |
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95 void MarkAsUnstable(int64_t id, |
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96 Orthanc::ResourceType type, |
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97 const std::string& publicId); |
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98 |
| 1237 | 99 void LogChange(int64_t internalId, |
| 100 ChangeType changeType, | |
| 101 ResourceType resourceType, | |
| 1297 | 102 const std::string& publicId); |
| 1237 | 103 |
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104 void SignalNewResource(ChangeType changeType, |
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105 ResourceType level, |
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106 const std::string& publicId, |
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107 int64_t internalId); |
| 1237 | 108 |
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109 uint64_t IncrementGlobalSequenceInternal(GlobalProperty property); |
| 1299 | 110 |
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111 void NormalizeLookup(std::vector<DatabaseConstraint>& target, |
| 3027 | 112 const DatabaseLookup& source, |
| 113 ResourceType level) const; | |
| 114 | |
| 4554 | 115 // A transaction must be running |
| 116 static SeriesStatus GetSeriesStatus(IDatabaseWrapper& db, | |
| 117 int64_t id, | |
| 118 int64_t expectedNumberOfInstances); | |
| 119 | |
| 120 bool IsUnstableResource(int64_t id); | |
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121 |
| 0 | 122 public: |
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123 ServerIndex(ServerContext& context, |
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124 IDatabaseWrapper& database, |
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125 unsigned int threadSleep); |
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127 ~ServerIndex(); |
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128 |
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129 void Stop(); |
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130 |
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131 uint64_t GetMaximumStorageSize() const |
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132 { |
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133 return maximumStorageSize_; |
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134 } |
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135 |
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136 uint64_t GetMaximumPatientCount() const |
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137 { |
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138 return maximumPatients_; |
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139 } |
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140 |
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141 // "size == 0" means no limit on the storage size |
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142 void SetMaximumStorageSize(uint64_t size); |
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143 |
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144 // "count == 0" means no limit on the number of patients |
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145 void SetMaximumPatientCount(unsigned int count); |
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146 |
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147 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata, |
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148 const DicomMap& dicomSummary, |
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149 const Attachments& attachments, |
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150 const MetadataMap& metadata, |
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151 const DicomInstanceOrigin& origin, |
| 4499 | 152 bool overwrite, |
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153 bool hasTransferSyntax, |
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154 DicomTransferSyntax transferSyntax, |
| 4499 | 155 bool hasPixelDataOffset, |
| 156 uint64_t pixelDataOffset); | |
| 0 | 157 |
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158 void SetProtectedPatient(const std::string& publicId, |
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159 bool isProtected); |
| 304 | 160 |
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161 void SetMetadata(const std::string& publicId, |
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162 MetadataType type, |
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163 const std::string& value); |
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164 |
| 438 | 165 void DeleteMetadata(const std::string& publicId, |
| 166 MetadataType type); | |
| 167 | |
| 310 | 168 uint64_t IncrementGlobalSequence(GlobalProperty sequence); |
| 315 | 169 |
| 170 void LogChange(ChangeType changeType, | |
| 171 const std::string& publicId); | |
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172 |
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173 void DeleteChanges(); |
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174 |
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175 void DeleteExportedResources(); |
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176 |
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177 StoreStatus AddAttachment(const FileInfo& attachment, |
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178 const std::string& publicId); |
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179 |
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180 void DeleteAttachment(const std::string& publicId, |
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181 FileContentType type); |
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182 |
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183 void SetGlobalProperty(GlobalProperty property, |
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184 const std::string& value); |
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185 |
| 4205 | 186 void ReconstructInstance(const ParsedDicomFile& dicom); |
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187 |
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188 |
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189 |
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190 /*** |
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191 ** PROTOTYPING FOR DB REFACTORING BELOW |
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192 ***/ |
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193 |
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194 public: |
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195 class ReadOnlyTransaction : public boost::noncopyable |
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196 { |
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197 protected: |
| 4554 | 198 IDatabaseWrapper& db_; |
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199 |
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200 public: |
| 4555 | 201 explicit ReadOnlyTransaction(IDatabaseWrapper& db) : |
| 4554 | 202 db_(db) |
| 203 { | |
| 204 } | |
| 205 | |
| 206 /** | |
| 207 * Higher-level constructions | |
| 208 **/ | |
| 209 | |
| 210 SeriesStatus GetSeriesStatus(int64_t id, | |
| 211 int64_t expectedNumberOfInstances) | |
| 212 { | |
| 213 return ServerIndex::GetSeriesStatus(db_, id, expectedNumberOfInstances); | |
| 214 } | |
| 215 | |
| 216 void MainDicomTagsToJson(Json::Value& result, | |
| 217 int64_t resourceId, | |
| 218 ResourceType resourceType) | |
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219 { |
| 4554 | 220 ServerIndex::MainDicomTagsToJson(result, db_, resourceId, resourceType); |
| 221 } | |
| 222 | |
| 223 /** | |
| 224 * Read-only methods from "IDatabaseWrapper" | |
| 225 **/ | |
| 226 | |
| 4562 | 227 void ApplyLookupResources(std::list<std::string>& resourcesId, |
| 228 std::list<std::string>* instancesId, // Can be NULL if not needed | |
| 229 const std::vector<DatabaseConstraint>& lookup, | |
| 230 ResourceType queryLevel, | |
| 231 size_t limit) | |
| 232 { | |
| 233 return db_.ApplyLookupResources(resourcesId, instancesId, lookup, queryLevel, limit); | |
| 234 } | |
| 235 | |
| 4554 | 236 void GetAllMetadata(std::map<MetadataType, std::string>& target, |
| 237 int64_t id) | |
| 238 { | |
| 239 db_.GetAllMetadata(target, id); | |
| 4555 | 240 } |
| 241 | |
| 242 void GetAllPublicIds(std::list<std::string>& target, | |
| 243 ResourceType resourceType) | |
| 244 { | |
| 245 return db_.GetAllPublicIds(target, resourceType); | |
| 246 } | |
| 247 | |
| 248 void GetAllPublicIds(std::list<std::string>& target, | |
| 249 ResourceType resourceType, | |
| 250 size_t since, | |
| 251 size_t limit) | |
| 252 { | |
| 253 return db_.GetAllPublicIds(target, resourceType, since, limit); | |
| 254 } | |
| 4554 | 255 |
| 4558 | 256 void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
| 257 bool& done /*out*/, | |
| 258 int64_t since, | |
| 259 uint32_t maxResults) | |
| 260 { | |
| 261 db_.GetChanges(target, done, since, maxResults); | |
| 262 } | |
| 263 | |
| 4559 | 264 void GetChildrenInternalId(std::list<int64_t>& target, |
| 265 int64_t id) | |
| 266 { | |
| 267 db_.GetChildrenInternalId(target, id); | |
| 268 } | |
| 269 | |
| 4554 | 270 void GetChildrenPublicId(std::list<std::string>& target, |
| 271 int64_t id) | |
| 272 { | |
| 273 db_.GetChildrenPublicId(target, id); | |
| 274 } | |
| 275 | |
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276 unsigned int GetDatabaseVersion() |
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277 { |
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278 return db_.GetDatabaseVersion(); |
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279 } |
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280 |
| 4558 | 281 void GetExportedResources(std::list<ExportedResource>& target /*out*/, |
| 282 bool& done /*out*/, | |
| 283 int64_t since, | |
| 284 uint32_t maxResults) | |
| 285 { | |
| 286 return db_.GetExportedResources(target, done, since, maxResults); | |
| 287 } | |
| 288 | |
| 289 void GetLastChange(std::list<ServerIndexChange>& target /*out*/) | |
| 290 { | |
| 291 db_.GetLastChange(target); | |
| 292 } | |
| 293 | |
| 294 void GetLastExportedResource(std::list<ExportedResource>& target /*out*/) | |
| 295 { | |
| 296 return db_.GetLastExportedResource(target); | |
| 297 } | |
| 298 | |
| 299 int64_t GetLastChangeIndex() | |
| 300 { | |
| 301 return db_.GetLastChangeIndex(); | |
| 302 } | |
| 303 | |
| 4554 | 304 void GetMainDicomTags(DicomMap& map, |
| 305 int64_t id) | |
| 306 { | |
| 307 db_.GetMainDicomTags(map, id); | |
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308 } |
| 4558 | 309 |
| 4559 | 310 std::string GetPublicId(int64_t resourceId) |
| 311 { | |
| 312 return db_.GetPublicId(resourceId); | |
| 313 } | |
| 314 | |
| 4558 | 315 uint64_t GetResourceCount(ResourceType resourceType) |
| 316 { | |
| 317 return db_.GetResourceCount(resourceType); | |
| 318 } | |
| 319 | |
| 4559 | 320 ResourceType GetResourceType(int64_t resourceId) |
| 321 { | |
| 322 return db_.GetResourceType(resourceId); | |
| 323 } | |
| 324 | |
| 4558 | 325 uint64_t GetTotalCompressedSize() |
| 326 { | |
| 327 return db_.GetTotalCompressedSize(); | |
| 328 } | |
| 329 | |
| 330 uint64_t GetTotalUncompressedSize() | |
| 331 { | |
| 332 return db_.GetTotalUncompressedSize(); | |
| 333 } | |
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334 |
| 4559 | 335 bool IsProtectedPatient(int64_t internalId) |
| 336 { | |
| 337 return db_.IsProtectedPatient(internalId); | |
| 338 } | |
| 339 | |
| 4560 | 340 void ListAvailableAttachments(std::set<FileContentType>& target, |
| 341 int64_t id) | |
| 342 { | |
| 343 db_.ListAvailableAttachments(target, id); | |
| 344 } | |
| 345 | |
| 4554 | 346 bool LookupAttachment(FileInfo& attachment, |
| 347 int64_t id, | |
| 348 FileContentType contentType) | |
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349 { |
| 4554 | 350 return db_.LookupAttachment(attachment, id, contentType); |
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351 } |
| 4554 | 352 |
| 4562 | 353 bool LookupGlobalProperty(std::string& target, |
| 354 GlobalProperty property) | |
| 355 { | |
| 356 return db_.LookupGlobalProperty(target, property); | |
| 357 } | |
| 358 | |
| 4560 | 359 bool LookupMetadata(std::string& target, |
| 360 int64_t id, | |
| 361 MetadataType type) | |
| 362 { | |
| 363 return db_.LookupMetadata(target, id, type); | |
| 364 } | |
| 365 | |
| 366 bool LookupParent(int64_t& parentId, | |
| 367 int64_t resourceId) | |
| 368 { | |
| 369 return db_.LookupParent(parentId, resourceId); | |
| 370 } | |
| 371 | |
| 4554 | 372 bool LookupResource(int64_t& id, |
| 373 ResourceType& type, | |
| 374 const std::string& publicId) | |
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375 { |
| 4554 | 376 return db_.LookupResource(id, type, publicId); |
| 377 } | |
| 378 | |
| 379 bool LookupResourceAndParent(int64_t& id, | |
| 380 ResourceType& type, | |
| 381 std::string& parentPublicId, | |
| 382 const std::string& publicId) | |
| 383 { | |
| 384 return db_.LookupResourceAndParent(id, type, parentPublicId, publicId); | |
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385 } |
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386 }; |
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387 |
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388 |
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389 class ReadWriteTransaction : public ReadOnlyTransaction |
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390 { |
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391 public: |
| 4555 | 392 explicit ReadWriteTransaction(IDatabaseWrapper& db) : |
| 4554 | 393 ReadOnlyTransaction(db) |
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394 { |
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395 } |
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396 |
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397 void DeleteResource(int64_t id) |
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398 { |
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399 db_.DeleteResource(id); |
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400 } |
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401 |
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402 void LogExportedResource(const ExportedResource& resource) |
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403 { |
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404 db_.LogExportedResource(resource); |
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405 } |
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406 }; |
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407 |
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408 |
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409 class IReadOnlyOperations : public boost::noncopyable |
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410 { |
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411 public: |
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412 virtual ~IReadOnlyOperations() |
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413 { |
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414 } |
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415 |
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416 virtual void Apply(ReadOnlyTransaction& transaction) = 0; |
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417 }; |
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418 |
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419 |
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420 class IReadWriteOperations : public boost::noncopyable |
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421 { |
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422 public: |
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423 virtual ~IReadWriteOperations() |
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424 { |
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425 } |
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426 |
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427 virtual void Apply(ReadWriteTransaction& transaction, |
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428 Listener& listener) = 0; |
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429 }; |
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430 |
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431 private: |
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432 void ApplyInternal(IReadOnlyOperations* readOperations, |
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433 IReadWriteOperations* writeOperations); |
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434 |
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435 unsigned int maxRetries_; |
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436 |
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437 public: |
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438 void Apply(IReadOnlyOperations& operations); |
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439 |
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440 void Apply(IReadWriteOperations& operations); |
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441 |
| 4554 | 442 bool ExpandResource(Json::Value& target, |
| 443 const std::string& publicId, | |
| 444 ResourceType level); | |
| 445 | |
| 446 void GetAllMetadata(std::map<MetadataType, std::string>& target, | |
| 447 const std::string& publicId, | |
| 448 ResourceType level); | |
| 4555 | 449 |
| 450 void GetAllUuids(std::list<std::string>& target, | |
| 451 ResourceType resourceType); | |
| 452 | |
| 453 void GetAllUuids(std::list<std::string>& target, | |
| 454 ResourceType resourceType, | |
| 455 size_t since, | |
| 456 size_t limit); | |
| 457 | |
| 4558 | 458 void GetGlobalStatistics(/* out */ uint64_t& diskSize, |
| 459 /* out */ uint64_t& uncompressedSize, | |
| 460 /* out */ uint64_t& countPatients, | |
| 461 /* out */ uint64_t& countStudies, | |
| 462 /* out */ uint64_t& countSeries, | |
| 463 /* out */ uint64_t& countInstances); | |
| 464 | |
| 4555 | 465 bool LookupAttachment(FileInfo& attachment, |
| 466 const std::string& instancePublicId, | |
| 467 FileContentType contentType); | |
| 4558 | 468 |
| 469 void GetChanges(Json::Value& target, | |
| 470 int64_t since, | |
| 471 unsigned int maxResults); | |
| 472 | |
| 473 void GetLastChange(Json::Value& target); | |
| 474 | |
| 475 void GetExportedResources(Json::Value& target, | |
| 476 int64_t since, | |
| 477 unsigned int maxResults); | |
| 478 | |
| 479 void GetLastExportedResource(Json::Value& target); | |
| 480 | |
| 4559 | 481 bool IsProtectedPatient(const std::string& publicId); |
| 482 | |
| 483 void GetChildren(std::list<std::string>& result, | |
| 484 const std::string& publicId); | |
| 485 | |
| 486 void GetChildInstances(std::list<std::string>& result, | |
| 487 const std::string& publicId); | |
| 4560 | 488 |
| 489 bool LookupMetadata(std::string& target, | |
| 490 const std::string& publicId, | |
| 491 ResourceType expectedType, | |
| 492 MetadataType type); | |
| 493 | |
| 494 void ListAvailableAttachments(std::set<FileContentType>& target, | |
| 495 const std::string& publicId, | |
| 496 ResourceType expectedType); | |
| 497 | |
| 498 bool LookupParent(std::string& target, | |
| 499 const std::string& publicId); | |
| 4562 | 500 |
| 501 void GetResourceStatistics(/* out */ ResourceType& type, | |
| 502 /* out */ uint64_t& diskSize, | |
| 503 /* out */ uint64_t& uncompressedSize, | |
| 504 /* out */ unsigned int& countStudies, | |
| 505 /* out */ unsigned int& countSeries, | |
| 506 /* out */ unsigned int& countInstances, | |
| 507 /* out */ uint64_t& dicomDiskSize, | |
| 508 /* out */ uint64_t& dicomUncompressedSize, | |
| 509 const std::string& publicId); | |
| 510 | |
| 511 void LookupIdentifierExact(std::vector<std::string>& result, | |
| 512 ResourceType level, | |
| 513 const DicomTag& tag, | |
| 514 const std::string& value); | |
| 515 | |
| 516 bool LookupGlobalProperty(std::string& value, | |
| 517 GlobalProperty property); | |
| 518 | |
| 519 std::string GetGlobalProperty(GlobalProperty property, | |
| 520 const std::string& defaultValue); | |
| 521 | |
| 522 bool GetMainDicomTags(DicomMap& result, | |
| 523 const std::string& publicId, | |
| 524 ResourceType expectedType, | |
| 525 ResourceType levelOfInterest); | |
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526 |
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527 // Only applicable at the instance level |
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528 bool GetAllMainDicomTags(DicomMap& result, |
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529 const std::string& instancePublicId); |
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530 |
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531 bool LookupResourceType(ResourceType& type, |
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532 const std::string& publicId); |
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533 |
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534 unsigned int GetDatabaseVersion(); |
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535 |
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536 bool LookupParent(std::string& target, |
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537 const std::string& publicId, |
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538 ResourceType parentType); |
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539 |
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540 void ApplyLookupResources(std::vector<std::string>& resourcesId, |
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541 std::vector<std::string>* instancesId, // Can be NULL if not needed |
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542 const DatabaseLookup& lookup, |
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543 ResourceType queryLevel, |
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544 size_t limit); |
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545 |
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546 bool DeleteResource(Json::Value& target /* out */, |
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547 const std::string& uuid, |
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548 ResourceType expectedType); |
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549 |
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550 void LogExportedResource(const std::string& publicId, |
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551 const std::string& remoteModality); |
| 0 | 552 }; |
| 553 } |