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annotate Applications/CMakeLists.txt @ 205:a8f25caebc07

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fix
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 04 Aug 2020 13:29:52 +0200
parents 9d3ffcc402a9
children 541a4aa63278
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1 cmake_minimum_required(VERSION 2.8)
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2 project(OrthancWSIApplications)
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3
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4 include(${CMAKE_SOURCE_DIR}/../Resources/CMake/Version.cmake)
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7 #####################################################################
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8 ## Parameters of the build
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9 #####################################################################
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10
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11 # Generic parameters
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12 SET(STATIC_BUILD OFF CACHE BOOL "Static build of the third-party libraries (necessary for Windows)")
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13 SET(ALLOW_DOWNLOADS OFF CACHE BOOL "Allow CMake to download packages")
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14 SET(ENABLE_PROFILING OFF CACHE BOOL "Whether to enable the generation of profiling information with gprof")
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15
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16 # Advanced parameters to fine-tune linking against system libraries
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17 SET(USE_SYSTEM_LIBTIFF ON CACHE BOOL "Use the system version of libtiff")
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18 SET(USE_SYSTEM_OPENJPEG ON CACHE BOOL "Use the system version of OpenJpeg")
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22 #####################################################################
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23 ## Configure mandatory third-party components
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24 #####################################################################
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25
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26 SET(ORTHANC_WSI_DIR ${CMAKE_CURRENT_LIST_DIR}/..)
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27 SET(USE_OPENJPEG_JP2 ON)
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29 include_directories(${ORTHANC_FRAMEWORK_ROOT})
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31 if (ORTHANC_FRAMEWORK_SOURCE STREQUAL "system")
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32 set(ENABLE_DCMTK ON)
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33 set(ORTHANC_BOOST_COMPONENTS program_options)
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34 include(${CMAKE_SOURCE_DIR}/../Resources/Orthanc/CMake/DownloadOrthancFramework.cmake)
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35 link_libraries(${ORTHANC_FRAMEWORK_LIBRARIES})
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36
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37 else()
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38 include(${CMAKE_SOURCE_DIR}/../Resources/Orthanc/CMake/DownloadOrthancFramework.cmake)
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39
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40 UNSET(STANDALONE_BUILD CACHE)
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41 SET(STANDALONE_BUILD ON) # Embed DCMTK's dictionaries for static builds
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43 include(${ORTHANC_FRAMEWORK_ROOT}/../Resources/CMake/OrthancFrameworkParameters.cmake)
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45 SET(ENABLE_CRYPTO_OPTIONS ON)
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46 SET(ENABLE_DCMTK ON)
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47 SET(ENABLE_DCMTK_JPEG OFF) # Disable DCMTK's support for JPEG, that clashes with libtiff
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48 SET(ENABLE_DCMTK_JPEG_LOSSLESS OFF) # Disable DCMTK's support for JPEG-LS
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49 SET(ENABLE_DCMTK_NETWORKING OFF) # Disable DCMTK's support for DICOM networking
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50 SET(ENABLE_JPEG ON)
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51 SET(ENABLE_LOCALE ON) # Enable support for locales (notably in Boost)
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52 SET(ENABLE_OPENSSL_ENGINES ON)
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53 SET(ENABLE_PNG ON)
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54 SET(ENABLE_SSL ON)
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55 SET(ENABLE_WEB_CLIENT ON)
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56 SET(ENABLE_ZLIB ON)
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58 include(${ORTHANC_FRAMEWORK_ROOT}/../Resources/CMake/VisualStudioPrecompiledHeaders.cmake)
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59 include(${ORTHANC_FRAMEWORK_ROOT}/../Resources/CMake/OrthancFrameworkConfiguration.cmake)
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60
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61 include(${ORTHANC_WSI_DIR}/Resources/CMake/BoostExtendedConfiguration.cmake)
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62 endif()
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65 # Include components specific to WSI
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66 include(${ORTHANC_WSI_DIR}/Resources/CMake/OpenJpegConfiguration.cmake)
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67 include(${ORTHANC_WSI_DIR}/Resources/CMake/LibTiffConfiguration.cmake)
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71 #####################################################################
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72 ## Create the list of the source files that depend upon the
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73 ## precompiled headers
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74 #####################################################################
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75
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76 set(ORTHANC_WSI_SOURCES
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77 ${ORTHANC_WSI_DIR}/Framework/Algorithms/PyramidReader.cpp
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78 ${ORTHANC_WSI_DIR}/Framework/Algorithms/ReconstructPyramidCommand.cpp
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79 ${ORTHANC_WSI_DIR}/Framework/Algorithms/TranscodeTileCommand.cpp
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80 ${ORTHANC_WSI_DIR}/Framework/DicomToolbox.cpp
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81 ${ORTHANC_WSI_DIR}/Framework/DicomizerParameters.cpp
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82 ${ORTHANC_WSI_DIR}/Framework/Enumerations.cpp
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83 ${ORTHANC_WSI_DIR}/Framework/ImageToolbox.cpp
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84 ${ORTHANC_WSI_DIR}/Framework/ImagedVolumeParameters.cpp
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85 ${ORTHANC_WSI_DIR}/Framework/Inputs/DecodedTiledPyramid.cpp
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86 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramid.cpp
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87 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidInstance.cpp
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88 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidLevel.cpp
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89 ${ORTHANC_WSI_DIR}/Framework/Inputs/HierarchicalTiff.cpp
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90 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlideLibrary.cpp
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91 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlidePyramid.cpp
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92 ${ORTHANC_WSI_DIR}/Framework/Inputs/PyramidWithRawTiles.cpp
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93 ${ORTHANC_WSI_DIR}/Framework/Inputs/SingleLevelDecodedPyramid.cpp
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94 ${ORTHANC_WSI_DIR}/Framework/Inputs/TiledPyramidStatistics.cpp
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95 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Reader.cpp
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96 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Writer.cpp
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97 ${ORTHANC_WSI_DIR}/Framework/MultiThreading/BagOfTasksProcessor.cpp
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98 ${ORTHANC_WSI_DIR}/Framework/Outputs/DicomPyramidWriter.cpp
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99 ${ORTHANC_WSI_DIR}/Framework/Outputs/HierarchicalTiffWriter.cpp
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100 ${ORTHANC_WSI_DIR}/Framework/Outputs/InMemoryTiledImage.cpp
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101 ${ORTHANC_WSI_DIR}/Framework/Outputs/MultiframeDicomWriter.cpp
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102 ${ORTHANC_WSI_DIR}/Framework/Outputs/PyramidWriterBase.cpp
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103 ${ORTHANC_WSI_DIR}/Framework/Outputs/TruncatedPyramidWriter.cpp
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104 ${ORTHANC_WSI_DIR}/Framework/Targets/FolderTarget.cpp
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105 ${ORTHANC_WSI_DIR}/Framework/Targets/OrthancTarget.cpp
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106 )
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107
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108 EmbedResources(
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109 ${DCMTK_DICTIONARIES}
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110 BRIGHTFIELD_OPTICAL_PATH ${ORTHANC_WSI_DIR}/Resources/BrightfieldOpticalPath.json
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111 SAMPLE_DATASET ${ORTHANC_WSI_DIR}/Resources/SampleDataset.json
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112 SRGB_ICC_PROFILE ${ORTHANC_WSI_DIR}/Resources/sRGB.icc
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113 )
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114
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115 add_definitions(
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116 -DORTHANC_ENABLE_LOGGING_PLUGIN=0
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117 )
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118
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119
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120 #####################################################################
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121 ## Setup precompiled headers for Microsoft Visual Studio
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122 #####################################################################
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123
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124 if (MSVC)
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125 add_definitions(-DORTHANC_USE_PRECOMPILED_HEADERS=1)
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126
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127 set(TMP
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128 ${ORTHANC_CORE_SOURCES_INTERNAL}
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129 ${ORTHANC_DICOM_SOURCES_INTERNAL}
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130 )
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131
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132 ADD_VISUAL_STUDIO_PRECOMPILED_HEADERS(
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133 "PrecompiledHeaders.h" "${ORTHANC_FRAMEWORK_ROOT}/PrecompiledHeaders.cpp"
140
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134 TMP ORTHANC_CORE_PCH)
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135
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136 ADD_VISUAL_STUDIO_PRECOMPILED_HEADERS(
118
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137 "PrecompiledHeadersWSI.h" "${ORTHANC_WSI_DIR}/Framework/PrecompiledHeadersWSI.cpp"
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138 ORTHANC_WSI_SOURCES ORTHANC_WSI_PCH)
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139
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140 source_group(ThirdParty\\OrthancCore FILES ${ORTHANC_CORE_SOURCES})
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141 endif()
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142
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143
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144 #####################################################################
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145 ## Create the static library containing the framework
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146 #####################################################################
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147
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148 add_library(OrthancWSIFramework STATIC
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149 ${ORTHANC_WSI_PCH}
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150 ${ORTHANC_WSI_SOURCES}
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151
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152 ${ORTHANC_CORE_PCH}
140
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153 ${ORTHANC_CORE_SOURCES_INTERNAL}
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154 ${ORTHANC_CORE_SOURCES_DEPENDENCIES}
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155 ${ORTHANC_DICOM_SOURCES_INTERNAL}
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156 ${ORTHANC_DICOM_SOURCES_DEPENDENCIES}
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157 ${AUTOGENERATED_SOURCES}
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158 ${BOOST_EXTENDED_SOURCES}
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159
196
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160 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/DicomDatasetReader.cpp
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161 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/DicomPath.cpp
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162 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/FullOrthancDataset.cpp
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163 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/IOrthancConnection.cpp
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164 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/OrthancHttpConnection.cpp
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165
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166 # Mandatory components
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167 ${LIBTIFF_SOURCES}
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168 ${OPENJPEG_SOURCES}
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169 )
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170
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171
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172 #####################################################################
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173 ## Build the WSI DICOM-izer
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174 #####################################################################
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175
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176 # Create the Windows resources, if need be
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177 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows")
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178 execute_process(
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179 COMMAND
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180 ${PYTHON_EXECUTABLE} ${ORTHANC_FRAMEWORK_ROOT}/../Resources/WindowsResources.py
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181 ${ORTHANC_WSI_VERSION} OrthancWSIDicomizer OrthancWSIDicomizer.exe "Companion tool to Orthanc for whole-slide imaging"
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182 ERROR_VARIABLE Failure
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183 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc
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184 )
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185
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186 if (Failure)
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187 message(FATAL_ERROR "Error while computing the version information: ${Failure}")
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188 endif()
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189
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190 set(DICOMIZER_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc)
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191 endif()
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192
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193
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194 add_executable(OrthancWSIDicomizer
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195 Dicomizer.cpp
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196 ApplicationToolbox.cpp
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197 ${DICOMIZER_RESOURCES}
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198 )
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199
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200 target_link_libraries(OrthancWSIDicomizer OrthancWSIFramework ${DCMTK_LIBRARIES})
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201
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202 install(
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203 TARGETS OrthancWSIDicomizer
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204 RUNTIME DESTINATION bin
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205 )
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206
0
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207
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208 #####################################################################
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209 ## Build the DICOM-to-TIFF conversion tool
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210 #####################################################################
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211
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212 # Create the Windows resources, if need be
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213 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows")
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214 execute_process(
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215 COMMAND
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216 ${PYTHON_EXECUTABLE} ${ORTHANC_FRAMEWORK_ROOT}/../Resources/WindowsResources.py
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217 ${ORTHANC_WSI_VERSION} OrthancWSIDicomToTiff OrthancWSIDicomToTiff.exe "Companion tool to Orthanc for whole-slide imaging"
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218 ERROR_VARIABLE Failure
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219 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc
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220 )
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221
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222 if (Failure)
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223 message(FATAL_ERROR "Error while computing the version information: ${Failure}")
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224 endif()
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225
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226 set(DICOM_TO_TIFF_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc)
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227 endif()
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228
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229
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230 add_executable(OrthancWSIDicomToTiff
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231 DicomToTiff.cpp
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232 ApplicationToolbox.cpp
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233 ${DICOM_TO_TIFF_RESOURCES}
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234 )
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235
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236 target_link_libraries(OrthancWSIDicomToTiff OrthancWSIFramework ${DCMTK_LIBRARIES})
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237
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238 install(
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239 TARGETS OrthancWSIDicomToTiff
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240 RUNTIME DESTINATION bin
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241 )
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242
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243
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244 #####################################################################
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245 ## Generate the documentation if Doxygen is present
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246 #####################################################################
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247
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248 find_package(Doxygen)
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249 if (DOXYGEN_FOUND)
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250 configure_file(
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251 ${ORTHANC_WSI_DIR}/Resources/OrthancWSI.doxygen
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252 ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen
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253 @ONLY)
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254
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255 add_custom_target(doc
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256 ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen
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257 COMMENT "Generating documentation with Doxygen" VERBATIM
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258 )
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259 else()
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260 message("Doxygen not found. The documentation will not be built.")
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261 endif()