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annotate Applications/CMakeLists.txt @ 240:24e5f64263a0

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improved CMakeLists.txt
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 23 Jun 2021 09:12:29 +0200
parents bab966288abe
children 49f647ed1b4c
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 cmake_minimum_required(VERSION 2.8)
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2 project(OrthancWSIApplications)
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3
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4 include(${CMAKE_SOURCE_DIR}/../Resources/CMake/Version.cmake)
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7 #####################################################################
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8 ## Parameters of the build
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9 #####################################################################
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10
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11 # Generic parameters
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12 SET(STATIC_BUILD OFF CACHE BOOL "Static build of the third-party libraries (necessary for Windows)")
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13 SET(ALLOW_DOWNLOADS OFF CACHE BOOL "Allow CMake to download packages")
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14 SET(ENABLE_PROFILING OFF CACHE BOOL "Whether to enable the generation of profiling information with gprof")
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15
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16 # Advanced parameters to fine-tune linking against system libraries
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17 SET(USE_SYSTEM_LIBTIFF ON CACHE BOOL "Use the system version of libtiff")
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18 SET(USE_SYSTEM_OPENJPEG ON CACHE BOOL "Use the system version of OpenJpeg")
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19
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22 #####################################################################
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23 ## Configure mandatory third-party components
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24 #####################################################################
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25
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26 SET(ORTHANC_WSI_DIR ${CMAKE_CURRENT_LIST_DIR}/..)
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27 SET(USE_OPENJPEG_JP2 ON)
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28
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29 include(${CMAKE_SOURCE_DIR}/../Resources/Orthanc/CMake/DownloadOrthancFramework.cmake)
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30
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31 if (ORTHANC_FRAMEWORK_SOURCE STREQUAL "system")
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32 if (ORTHANC_FRAMEWORK_USE_SHARED)
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33 include(FindBoost)
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34 find_package(Boost COMPONENTS filesystem program_options regex system thread)
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35
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36 if (NOT Boost_FOUND)
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37 message(FATAL_ERROR "Unable to locate Boost on this system")
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38 endif()
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39
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40 include(FindDCMTK)
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41 link_libraries(${Boost_LIBRARIES} ${DCMTK_LIBRARIES} jsoncpp)
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42 endif()
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43
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44 link_libraries(${ORTHANC_FRAMEWORK_LIBRARIES})
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45
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46 else()
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47 include_directories(${ORTHANC_FRAMEWORK_ROOT})
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49 UNSET(STANDALONE_BUILD CACHE)
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50 SET(STANDALONE_BUILD ON) # Embed DCMTK's dictionaries for static builds
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52 include(${ORTHANC_FRAMEWORK_ROOT}/../Resources/CMake/OrthancFrameworkParameters.cmake)
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54 SET(ENABLE_CRYPTO_OPTIONS ON)
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55 SET(ENABLE_DCMTK ON)
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56 SET(ENABLE_DCMTK_JPEG OFF) # Disable DCMTK's support for JPEG, that clashes with libtiff
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57 SET(ENABLE_DCMTK_JPEG_LOSSLESS OFF) # Disable DCMTK's support for JPEG-LS
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58 SET(ENABLE_DCMTK_NETWORKING OFF) # Disable DCMTK's support for DICOM networking
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59 SET(ENABLE_JPEG ON)
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60 SET(ENABLE_LOCALE ON) # Enable support for locales (notably in Boost)
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61 SET(ENABLE_OPENSSL_ENGINES ON)
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62 SET(ENABLE_PNG ON)
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63 SET(ENABLE_SSL ON)
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64 SET(ENABLE_WEB_CLIENT ON)
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65 SET(ENABLE_ZLIB ON)
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67 include(${ORTHANC_FRAMEWORK_ROOT}/../Resources/CMake/VisualStudioPrecompiledHeaders.cmake)
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68 include(${ORTHANC_FRAMEWORK_ROOT}/../Resources/CMake/OrthancFrameworkConfiguration.cmake)
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69
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70 include(${ORTHANC_WSI_DIR}/Resources/CMake/BoostExtendedConfiguration.cmake)
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71 endif()
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74 # Include components specific to WSI
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75 include(${ORTHANC_WSI_DIR}/Resources/CMake/OpenJpegConfiguration.cmake)
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76 include(${ORTHANC_WSI_DIR}/Resources/CMake/LibTiffConfiguration.cmake)
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80 #####################################################################
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81 ## Create the list of the source files that depend upon the
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82 ## precompiled headers
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83 #####################################################################
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84
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85 set(ORTHANC_WSI_SOURCES
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86 ${ORTHANC_WSI_DIR}/Framework/Algorithms/PyramidReader.cpp
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87 ${ORTHANC_WSI_DIR}/Framework/Algorithms/ReconstructPyramidCommand.cpp
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88 ${ORTHANC_WSI_DIR}/Framework/Algorithms/TranscodeTileCommand.cpp
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89 ${ORTHANC_WSI_DIR}/Framework/DicomToolbox.cpp
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90 ${ORTHANC_WSI_DIR}/Framework/DicomizerParameters.cpp
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91 ${ORTHANC_WSI_DIR}/Framework/Enumerations.cpp
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92 ${ORTHANC_WSI_DIR}/Framework/ImageToolbox.cpp
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93 ${ORTHANC_WSI_DIR}/Framework/ImagedVolumeParameters.cpp
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94 ${ORTHANC_WSI_DIR}/Framework/Inputs/DecodedTiledPyramid.cpp
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95 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramid.cpp
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96 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidInstance.cpp
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97 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidLevel.cpp
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98 ${ORTHANC_WSI_DIR}/Framework/Inputs/HierarchicalTiff.cpp
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99 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlideLibrary.cpp
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100 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlidePyramid.cpp
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101 ${ORTHANC_WSI_DIR}/Framework/Inputs/PyramidWithRawTiles.cpp
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102 ${ORTHANC_WSI_DIR}/Framework/Inputs/SingleLevelDecodedPyramid.cpp
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103 ${ORTHANC_WSI_DIR}/Framework/Inputs/TiledPyramidStatistics.cpp
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104 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Reader.cpp
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105 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Writer.cpp
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106 ${ORTHANC_WSI_DIR}/Framework/MultiThreading/BagOfTasksProcessor.cpp
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107 ${ORTHANC_WSI_DIR}/Framework/Outputs/DicomPyramidWriter.cpp
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108 ${ORTHANC_WSI_DIR}/Framework/Outputs/HierarchicalTiffWriter.cpp
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109 ${ORTHANC_WSI_DIR}/Framework/Outputs/InMemoryTiledImage.cpp
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110 ${ORTHANC_WSI_DIR}/Framework/Outputs/MultiframeDicomWriter.cpp
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111 ${ORTHANC_WSI_DIR}/Framework/Outputs/PyramidWriterBase.cpp
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112 ${ORTHANC_WSI_DIR}/Framework/Outputs/TruncatedPyramidWriter.cpp
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113 ${ORTHANC_WSI_DIR}/Framework/Targets/FolderTarget.cpp
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114 ${ORTHANC_WSI_DIR}/Framework/Targets/OrthancTarget.cpp
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115 )
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116
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117 EmbedResources(
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118 ${DCMTK_DICTIONARIES}
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119 BRIGHTFIELD_OPTICAL_PATH ${ORTHANC_WSI_DIR}/Resources/BrightfieldOpticalPath.json
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120 SAMPLE_DATASET ${ORTHANC_WSI_DIR}/Resources/SampleDataset.json
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121 SRGB_ICC_PROFILE ${ORTHANC_WSI_DIR}/Resources/sRGB.icc
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122 )
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123
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124 add_definitions(
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125 -DORTHANC_ENABLE_LOGGING_PLUGIN=0
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126 )
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127
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128
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129 #####################################################################
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130 ## Setup precompiled headers for Microsoft Visual Studio
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131 #####################################################################
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132
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133 if (MSVC)
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134 add_definitions(-DORTHANC_USE_PRECOMPILED_HEADERS=1)
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135
140
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136 set(TMP
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137 ${ORTHANC_CORE_SOURCES_INTERNAL}
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138 ${ORTHANC_DICOM_SOURCES_INTERNAL}
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139 )
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140
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141 ADD_VISUAL_STUDIO_PRECOMPILED_HEADERS(
205
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142 "PrecompiledHeaders.h" "${ORTHANC_FRAMEWORK_ROOT}/PrecompiledHeaders.cpp"
140
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143 TMP ORTHANC_CORE_PCH)
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144
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145 ADD_VISUAL_STUDIO_PRECOMPILED_HEADERS(
118
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146 "PrecompiledHeadersWSI.h" "${ORTHANC_WSI_DIR}/Framework/PrecompiledHeadersWSI.cpp"
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147 ORTHANC_WSI_SOURCES ORTHANC_WSI_PCH)
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148
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149 source_group(ThirdParty\\OrthancCore FILES ${ORTHANC_CORE_SOURCES})
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150 endif()
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151
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152
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153 #####################################################################
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154 ## Create the static library containing the framework
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155 #####################################################################
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156
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157 add_library(OrthancWSIFramework STATIC
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158 ${ORTHANC_WSI_PCH}
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159 ${ORTHANC_WSI_SOURCES}
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160
118
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161 ${ORTHANC_CORE_PCH}
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162 ${ORTHANC_CORE_SOURCES_INTERNAL}
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163 ${ORTHANC_CORE_SOURCES_DEPENDENCIES}
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164 ${ORTHANC_DICOM_SOURCES_INTERNAL}
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165 ${ORTHANC_DICOM_SOURCES_DEPENDENCIES}
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166 ${AUTOGENERATED_SOURCES}
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167 ${BOOST_EXTENDED_SOURCES}
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168
196
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169 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/DicomDatasetReader.cpp
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170 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/FullOrthancDataset.cpp
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171 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/IOrthancConnection.cpp
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172 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/OrthancHttpConnection.cpp
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173
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174 # Mandatory components
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175 ${LIBTIFF_SOURCES}
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176 ${OPENJPEG_SOURCES}
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177 )
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178
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179
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180 #####################################################################
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181 ## Build the WSI DICOM-izer
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182 #####################################################################
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183
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184 # Create the Windows resources, if need be
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185 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows")
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186 execute_process(
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187 COMMAND
205
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188 ${PYTHON_EXECUTABLE} ${ORTHANC_FRAMEWORK_ROOT}/../Resources/WindowsResources.py
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189 ${ORTHANC_WSI_VERSION} OrthancWSIDicomizer OrthancWSIDicomizer.exe "Companion tool to Orthanc for whole-slide imaging"
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190 ERROR_VARIABLE Failure
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191 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc
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192 )
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193
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194 if (Failure)
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195 message(FATAL_ERROR "Error while computing the version information: ${Failure}")
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196 endif()
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197
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198 set(DICOMIZER_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc)
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199 endif()
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200
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201
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202 add_executable(OrthancWSIDicomizer
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203 Dicomizer.cpp
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204 ApplicationToolbox.cpp
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205 ${DICOMIZER_RESOURCES}
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206 )
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207
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208 target_link_libraries(OrthancWSIDicomizer OrthancWSIFramework ${DCMTK_LIBRARIES})
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209
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210 install(
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211 TARGETS OrthancWSIDicomizer
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212 RUNTIME DESTINATION bin
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213 )
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214
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215
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216 #####################################################################
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217 ## Build the DICOM-to-TIFF conversion tool
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218 #####################################################################
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219
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220 # Create the Windows resources, if need be
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221 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows")
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222 execute_process(
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223 COMMAND
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224 ${PYTHON_EXECUTABLE} ${ORTHANC_FRAMEWORK_ROOT}/../Resources/WindowsResources.py
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225 ${ORTHANC_WSI_VERSION} OrthancWSIDicomToTiff OrthancWSIDicomToTiff.exe "Companion tool to Orthanc for whole-slide imaging"
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226 ERROR_VARIABLE Failure
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227 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc
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228 )
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229
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230 if (Failure)
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231 message(FATAL_ERROR "Error while computing the version information: ${Failure}")
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232 endif()
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233
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234 set(DICOM_TO_TIFF_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc)
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235 endif()
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236
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237
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238 add_executable(OrthancWSIDicomToTiff
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239 DicomToTiff.cpp
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240 ApplicationToolbox.cpp
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241 ${DICOM_TO_TIFF_RESOURCES}
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242 )
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243
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244 target_link_libraries(OrthancWSIDicomToTiff OrthancWSIFramework ${DCMTK_LIBRARIES})
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245
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246 install(
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247 TARGETS OrthancWSIDicomToTiff
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248 RUNTIME DESTINATION bin
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249 )
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250
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251
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252 #####################################################################
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253 ## Generate the documentation if Doxygen is present
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254 #####################################################################
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255
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256 find_package(Doxygen)
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257 if (DOXYGEN_FOUND)
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258 configure_file(
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259 ${ORTHANC_WSI_DIR}/Resources/OrthancWSI.doxygen
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260 ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen
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261 @ONLY)
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262
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263 add_custom_target(doc
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264 ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen
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265 COMMENT "Generating documentation with Doxygen" VERBATIM
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266 )
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267 else()
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268 message("Doxygen not found. The documentation will not be built.")
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269 endif()