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annotate Applications/CMakeLists.txt @ 217:20bc074ec19a

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Viewer can display DICOM pyramids whose tile sizes vary across levels
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 12 Jan 2021 14:24:18 +0100
parents 541a4aa63278
children 443f219a68fd
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1 cmake_minimum_required(VERSION 2.8)
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2 project(OrthancWSIApplications)
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4 include(${CMAKE_SOURCE_DIR}/../Resources/CMake/Version.cmake)
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7 #####################################################################
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8 ## Parameters of the build
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9 #####################################################################
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10
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11 # Generic parameters
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12 SET(STATIC_BUILD OFF CACHE BOOL "Static build of the third-party libraries (necessary for Windows)")
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13 SET(ALLOW_DOWNLOADS OFF CACHE BOOL "Allow CMake to download packages")
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14 SET(ENABLE_PROFILING OFF CACHE BOOL "Whether to enable the generation of profiling information with gprof")
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16 # Advanced parameters to fine-tune linking against system libraries
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17 SET(USE_SYSTEM_LIBTIFF ON CACHE BOOL "Use the system version of libtiff")
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18 SET(USE_SYSTEM_OPENJPEG ON CACHE BOOL "Use the system version of OpenJpeg")
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22 #####################################################################
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23 ## Configure mandatory third-party components
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24 #####################################################################
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25
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26 SET(ORTHANC_WSI_DIR ${CMAKE_CURRENT_LIST_DIR}/..)
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27 SET(USE_OPENJPEG_JP2 ON)
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29 if (ORTHANC_FRAMEWORK_SOURCE STREQUAL "system")
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30 set(ENABLE_DCMTK ON)
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31 set(ORTHANC_BOOST_COMPONENTS program_options)
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32 include(${CMAKE_SOURCE_DIR}/../Resources/Orthanc/CMake/DownloadOrthancFramework.cmake)
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34 link_libraries(${ORTHANC_FRAMEWORK_LIBRARIES})
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35 include_directories(${ORTHANC_FRAMEWORK_ROOT})
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36
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37 else()
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38 include(${CMAKE_SOURCE_DIR}/../Resources/Orthanc/CMake/DownloadOrthancFramework.cmake)
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39 include_directories(${ORTHANC_FRAMEWORK_ROOT})
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41 UNSET(STANDALONE_BUILD CACHE)
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42 SET(STANDALONE_BUILD ON) # Embed DCMTK's dictionaries for static builds
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44 include(${ORTHANC_FRAMEWORK_ROOT}/../Resources/CMake/OrthancFrameworkParameters.cmake)
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46 SET(ENABLE_CRYPTO_OPTIONS ON)
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47 SET(ENABLE_DCMTK ON)
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48 SET(ENABLE_DCMTK_JPEG OFF) # Disable DCMTK's support for JPEG, that clashes with libtiff
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49 SET(ENABLE_DCMTK_JPEG_LOSSLESS OFF) # Disable DCMTK's support for JPEG-LS
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50 SET(ENABLE_DCMTK_NETWORKING OFF) # Disable DCMTK's support for DICOM networking
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51 SET(ENABLE_JPEG ON)
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52 SET(ENABLE_LOCALE ON) # Enable support for locales (notably in Boost)
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53 SET(ENABLE_OPENSSL_ENGINES ON)
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54 SET(ENABLE_PNG ON)
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55 SET(ENABLE_SSL ON)
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56 SET(ENABLE_WEB_CLIENT ON)
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57 SET(ENABLE_ZLIB ON)
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59 include(${ORTHANC_FRAMEWORK_ROOT}/../Resources/CMake/VisualStudioPrecompiledHeaders.cmake)
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60 include(${ORTHANC_FRAMEWORK_ROOT}/../Resources/CMake/OrthancFrameworkConfiguration.cmake)
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61
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62 include(${ORTHANC_WSI_DIR}/Resources/CMake/BoostExtendedConfiguration.cmake)
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63 endif()
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66 # Include components specific to WSI
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67 include(${ORTHANC_WSI_DIR}/Resources/CMake/OpenJpegConfiguration.cmake)
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68 include(${ORTHANC_WSI_DIR}/Resources/CMake/LibTiffConfiguration.cmake)
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72 #####################################################################
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73 ## Create the list of the source files that depend upon the
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74 ## precompiled headers
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75 #####################################################################
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76
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77 set(ORTHANC_WSI_SOURCES
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78 ${ORTHANC_WSI_DIR}/Framework/Algorithms/PyramidReader.cpp
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79 ${ORTHANC_WSI_DIR}/Framework/Algorithms/ReconstructPyramidCommand.cpp
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80 ${ORTHANC_WSI_DIR}/Framework/Algorithms/TranscodeTileCommand.cpp
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81 ${ORTHANC_WSI_DIR}/Framework/DicomToolbox.cpp
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82 ${ORTHANC_WSI_DIR}/Framework/DicomizerParameters.cpp
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83 ${ORTHANC_WSI_DIR}/Framework/Enumerations.cpp
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84 ${ORTHANC_WSI_DIR}/Framework/ImageToolbox.cpp
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85 ${ORTHANC_WSI_DIR}/Framework/ImagedVolumeParameters.cpp
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86 ${ORTHANC_WSI_DIR}/Framework/Inputs/DecodedTiledPyramid.cpp
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87 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramid.cpp
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88 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidInstance.cpp
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89 ${ORTHANC_WSI_DIR}/Framework/Inputs/DicomPyramidLevel.cpp
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90 ${ORTHANC_WSI_DIR}/Framework/Inputs/HierarchicalTiff.cpp
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91 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlideLibrary.cpp
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92 ${ORTHANC_WSI_DIR}/Framework/Inputs/OpenSlidePyramid.cpp
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93 ${ORTHANC_WSI_DIR}/Framework/Inputs/PyramidWithRawTiles.cpp
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94 ${ORTHANC_WSI_DIR}/Framework/Inputs/SingleLevelDecodedPyramid.cpp
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95 ${ORTHANC_WSI_DIR}/Framework/Inputs/TiledPyramidStatistics.cpp
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96 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Reader.cpp
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97 ${ORTHANC_WSI_DIR}/Framework/Jpeg2000Writer.cpp
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98 ${ORTHANC_WSI_DIR}/Framework/MultiThreading/BagOfTasksProcessor.cpp
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99 ${ORTHANC_WSI_DIR}/Framework/Outputs/DicomPyramidWriter.cpp
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100 ${ORTHANC_WSI_DIR}/Framework/Outputs/HierarchicalTiffWriter.cpp
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101 ${ORTHANC_WSI_DIR}/Framework/Outputs/InMemoryTiledImage.cpp
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102 ${ORTHANC_WSI_DIR}/Framework/Outputs/MultiframeDicomWriter.cpp
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103 ${ORTHANC_WSI_DIR}/Framework/Outputs/PyramidWriterBase.cpp
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104 ${ORTHANC_WSI_DIR}/Framework/Outputs/TruncatedPyramidWriter.cpp
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105 ${ORTHANC_WSI_DIR}/Framework/Targets/FolderTarget.cpp
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106 ${ORTHANC_WSI_DIR}/Framework/Targets/OrthancTarget.cpp
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107 )
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108
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109 EmbedResources(
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110 ${DCMTK_DICTIONARIES}
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111 BRIGHTFIELD_OPTICAL_PATH ${ORTHANC_WSI_DIR}/Resources/BrightfieldOpticalPath.json
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112 SAMPLE_DATASET ${ORTHANC_WSI_DIR}/Resources/SampleDataset.json
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113 SRGB_ICC_PROFILE ${ORTHANC_WSI_DIR}/Resources/sRGB.icc
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114 )
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115
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116 add_definitions(
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117 -DORTHANC_ENABLE_LOGGING_PLUGIN=0
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118 )
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119
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120
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121 #####################################################################
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122 ## Setup precompiled headers for Microsoft Visual Studio
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123 #####################################################################
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124
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125 if (MSVC)
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126 add_definitions(-DORTHANC_USE_PRECOMPILED_HEADERS=1)
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127
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128 set(TMP
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129 ${ORTHANC_CORE_SOURCES_INTERNAL}
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130 ${ORTHANC_DICOM_SOURCES_INTERNAL}
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131 )
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132
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133 ADD_VISUAL_STUDIO_PRECOMPILED_HEADERS(
205
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134 "PrecompiledHeaders.h" "${ORTHANC_FRAMEWORK_ROOT}/PrecompiledHeaders.cpp"
140
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135 TMP ORTHANC_CORE_PCH)
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136
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137 ADD_VISUAL_STUDIO_PRECOMPILED_HEADERS(
118
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138 "PrecompiledHeadersWSI.h" "${ORTHANC_WSI_DIR}/Framework/PrecompiledHeadersWSI.cpp"
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139 ORTHANC_WSI_SOURCES ORTHANC_WSI_PCH)
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140
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141 source_group(ThirdParty\\OrthancCore FILES ${ORTHANC_CORE_SOURCES})
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142 endif()
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143
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144
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145 #####################################################################
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146 ## Create the static library containing the framework
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147 #####################################################################
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148
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149 add_library(OrthancWSIFramework STATIC
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150 ${ORTHANC_WSI_PCH}
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151 ${ORTHANC_WSI_SOURCES}
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152
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153 ${ORTHANC_CORE_PCH}
140
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154 ${ORTHANC_CORE_SOURCES_INTERNAL}
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155 ${ORTHANC_CORE_SOURCES_DEPENDENCIES}
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156 ${ORTHANC_DICOM_SOURCES_INTERNAL}
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157 ${ORTHANC_DICOM_SOURCES_DEPENDENCIES}
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158 ${AUTOGENERATED_SOURCES}
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159 ${BOOST_EXTENDED_SOURCES}
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160
196
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161 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/DicomDatasetReader.cpp
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162 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/DicomPath.cpp
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163 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/FullOrthancDataset.cpp
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164 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/IOrthancConnection.cpp
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165 ${ORTHANC_WSI_DIR}/Resources/Orthanc/Stone/OrthancHttpConnection.cpp
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166
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167 # Mandatory components
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168 ${LIBTIFF_SOURCES}
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169 ${OPENJPEG_SOURCES}
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170 )
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171
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172
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173 #####################################################################
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174 ## Build the WSI DICOM-izer
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175 #####################################################################
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176
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177 # Create the Windows resources, if need be
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178 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows")
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179 execute_process(
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180 COMMAND
205
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181 ${PYTHON_EXECUTABLE} ${ORTHANC_FRAMEWORK_ROOT}/../Resources/WindowsResources.py
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182 ${ORTHANC_WSI_VERSION} OrthancWSIDicomizer OrthancWSIDicomizer.exe "Companion tool to Orthanc for whole-slide imaging"
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183 ERROR_VARIABLE Failure
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184 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc
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185 )
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186
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187 if (Failure)
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188 message(FATAL_ERROR "Error while computing the version information: ${Failure}")
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189 endif()
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190
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191 set(DICOMIZER_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomizer.rc)
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192 endif()
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193
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194
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195 add_executable(OrthancWSIDicomizer
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196 Dicomizer.cpp
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197 ApplicationToolbox.cpp
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198 ${DICOMIZER_RESOURCES}
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199 )
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200
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201 target_link_libraries(OrthancWSIDicomizer OrthancWSIFramework ${DCMTK_LIBRARIES})
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202
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203 install(
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204 TARGETS OrthancWSIDicomizer
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205 RUNTIME DESTINATION bin
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206 )
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207
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208
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209 #####################################################################
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210 ## Build the DICOM-to-TIFF conversion tool
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211 #####################################################################
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212
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213 # Create the Windows resources, if need be
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214 if (${CMAKE_SYSTEM_NAME} STREQUAL "Windows")
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215 execute_process(
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216 COMMAND
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217 ${PYTHON_EXECUTABLE} ${ORTHANC_FRAMEWORK_ROOT}/../Resources/WindowsResources.py
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218 ${ORTHANC_WSI_VERSION} OrthancWSIDicomToTiff OrthancWSIDicomToTiff.exe "Companion tool to Orthanc for whole-slide imaging"
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219 ERROR_VARIABLE Failure
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220 OUTPUT_FILE ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc
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221 )
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222
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223 if (Failure)
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224 message(FATAL_ERROR "Error while computing the version information: ${Failure}")
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225 endif()
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226
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227 set(DICOM_TO_TIFF_RESOURCES ${AUTOGENERATED_DIR}/OrthancWSIDicomToTiff.rc)
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228 endif()
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229
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230
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231 add_executable(OrthancWSIDicomToTiff
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232 DicomToTiff.cpp
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233 ApplicationToolbox.cpp
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234 ${DICOM_TO_TIFF_RESOURCES}
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235 )
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236
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237 target_link_libraries(OrthancWSIDicomToTiff OrthancWSIFramework ${DCMTK_LIBRARIES})
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238
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239 install(
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240 TARGETS OrthancWSIDicomToTiff
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241 RUNTIME DESTINATION bin
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242 )
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243
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244
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245 #####################################################################
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246 ## Generate the documentation if Doxygen is present
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247 #####################################################################
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248
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249 find_package(Doxygen)
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250 if (DOXYGEN_FOUND)
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251 configure_file(
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252 ${ORTHANC_WSI_DIR}/Resources/OrthancWSI.doxygen
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253 ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen
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254 @ONLY)
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255
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256 add_custom_target(doc
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257 ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/OrthancWSI.doxygen
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258 COMMENT "Generating documentation with Doxygen" VERBATIM
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259 )
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260 else()
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261 message("Doxygen not found. The documentation will not be built.")
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262 endif()