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annotate Applications/Samples/SingleVolumeApplication.h @ 126:c9e88e7935a4 wasm

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rt-struct projection
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 08 Nov 2017 17:27:38 +0100
parents ed0003f6102c
children c993693e9e63
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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7207a407bcd8 shared copyright with osimis
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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21
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22 #pragma once
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23
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24 #include "SampleApplicationBase.h"
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25 #include "../../Framework/dev.h"
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26 #include "../../Framework/Layers/ILayerSource.h"
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27 #include "../../Framework/Layers/LineMeasureTracker.h"
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28 #include "../../Framework/Layers/CircleMeasureTracker.h"
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30 #include <Core/Toolbox.h>
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31 #include <Core/Logging.h>
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33 #include <Plugins/Samples/Common/OrthancHttpConnection.h> // TODO REMOVE
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34 #include "../../Framework/Layers/DicomStructureSetRendererFactory.h" // TODO REMOVE
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35 #include "../../Framework/Toolbox/MessagingToolbox.h" // TODO REMOVE
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36
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37 namespace OrthancStone
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38 {
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39 namespace Samples
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40 {
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41 class SingleVolumeApplication : public SampleApplicationBase
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42 {
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43 private:
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44 class Interactor : public VolumeImageInteractor
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45 {
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46 private:
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47 LayerWidget& widget_;
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48 size_t layer_;
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49
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50 protected:
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51 virtual void NotifySliceChange(const ISlicedVolume& volume,
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52 const size_t& sliceIndex,
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53 const Slice& slice)
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54 {
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55 const OrthancVolumeImage& image = dynamic_cast<const OrthancVolumeImage&>(volume);
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56
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57 RenderStyle s = widget_.GetLayerStyle(layer_);
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58
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59 if (image.FitWindowingToRange(s, slice.GetConverter()))
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60 {
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61 //printf("Windowing: %f => %f\n", s.customWindowCenter_, s.customWindowWidth_);
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62 widget_.SetLayerStyle(layer_, s);
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63 }
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64 }
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65
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66 virtual void MouseOver(CairoContext& context,
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67 WorldSceneWidget& widget,
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68 const ViewportGeometry& view,
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69 double x,
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70 double y,
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71 IStatusBar* statusBar)
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72 {
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73 const LayerWidget& w = dynamic_cast<const LayerWidget&>(widget);
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74 Vector p = w.GetSlice().MapSliceToWorldCoordinates(x, y);
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75 printf("%f %f %f\n", p[0], p[1], p[2]);
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76 }
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77
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78 public:
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79 Interactor(OrthancVolumeImage& volume,
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80 LayerWidget& widget,
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81 VolumeProjection projection,
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82 size_t layer) :
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83 VolumeImageInteractor(volume, widget, projection),
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84 widget_(widget),
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85 layer_(layer)
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86 {
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87 }
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88 };
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89
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91 public:
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92 virtual void DeclareCommandLineOptions(boost::program_options::options_description& options)
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93 {
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94 boost::program_options::options_description generic("Sample options");
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95 generic.add_options()
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96 ("series", boost::program_options::value<std::string>(),
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97 "Orthanc ID of the series")
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98 ("instance", boost::program_options::value<std::string>(),
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99 "Orthanc ID of a multi-frame instance that describes a 3D volume")
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100 ("threads", boost::program_options::value<unsigned int>()->default_value(3),
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101 "Number of download threads")
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102 ("projection", boost::program_options::value<std::string>()->default_value("axial"),
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103 "Projection of interest (can be axial, sagittal or coronal)")
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104 ("reverse", boost::program_options::value<bool>()->default_value(false),
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105 "Reverse the normal direction of the volume")
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106 ;
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107
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108 options.add(generic);
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109 }
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110
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111 virtual void Initialize(BasicApplicationContext& context,
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112 IStatusBar& statusBar,
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113 const boost::program_options::variables_map& parameters)
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114 {
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115 using namespace OrthancStone;
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116
117
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117 if (parameters.count("series") > 1 ||
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118 parameters.count("instance") > 1)
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119 {
117
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120 LOG(ERROR) << "Only one series or instance is allowed";
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121 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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122 }
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123
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124 if (parameters.count("series") == 1 &&
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125 parameters.count("instance") == 1)
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126 {
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127 LOG(ERROR) << "Cannot specify both a series and an instance";
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128 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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129 }
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130
117
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131 std::string series;
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132 if (parameters.count("series") == 1)
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133 {
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134 series = parameters["series"].as<std::string>();
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135 }
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136
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137 std::string instance;
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138 if (parameters.count("instance") == 1)
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139 {
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140 instance = parameters["instance"].as<std::string>();
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141 }
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142
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143 if (series.empty() &&
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144 instance.empty())
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145 {
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146 LOG(ERROR) << "The series ID or instance ID is missing";
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147 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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148 }
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149
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150 unsigned int threads = parameters["threads"].as<unsigned int>();
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151 bool reverse = parameters["reverse"].as<bool>();
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152
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153 std::string tmp = parameters["projection"].as<std::string>();
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154 Orthanc::Toolbox::ToLowerCase(tmp);
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155
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156 VolumeProjection projection;
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157 if (tmp == "axial")
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158 {
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159 projection = VolumeProjection_Axial;
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160 }
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161 else if (tmp == "sagittal")
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162 {
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163 projection = VolumeProjection_Sagittal;
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164 }
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165 else if (tmp == "coronal")
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166 {
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167 projection = VolumeProjection_Coronal;
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168 }
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169 else
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170 {
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171 LOG(ERROR) << "Unknown projection: " << tmp;
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172 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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173 }
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174
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175 std::auto_ptr<LayerWidget> widget(new LayerWidget);
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176
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177 #if 0
119
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178 std::auto_ptr<OrthancVolumeImage> volume(new OrthancVolumeImage(context.GetWebService(), true));
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179 if (series.empty())
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180 {
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181 volume->ScheduleLoadInstance(instance);
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182 }
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183 else
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184 {
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185 volume->ScheduleLoadSeries(series);
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186 }
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187
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188 widget->AddLayer(new VolumeImageSource(*volume));
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189
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190 context.AddInteractor(new Interactor(*volume, *widget, projection, 0));
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191 context.AddVolume(volume.release());
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192
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193 {
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194 RenderStyle s;
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195 s.alpha_ = 1;
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196 s.applyLut_ = true;
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197 s.lut_ = Orthanc::EmbeddedResources::COLORMAP_JET;
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198 s.interpolation_ = ImageInterpolation_Linear;
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199 widget->SetLayerStyle(0, s);
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200 }
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201 #else
119
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202 std::auto_ptr<OrthancVolumeImage> ct(new OrthancVolumeImage(context.GetWebService(), false));
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203 //ct->ScheduleLoadSeries("dd069910-4f090474-7d2bba07-e5c10783-f9e4fb1d");
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204 ct->ScheduleLoadSeries("a04ecf01-79b2fc33-58239f7e-ad9db983-28e81afa"); // IBA
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205 //ct->ScheduleLoadSeries("03677739-1d8bca40-db1daf59-d74ff548-7f6fc9c0"); // 0522c0001 TCIA
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206
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207 std::auto_ptr<OrthancVolumeImage> pet(new OrthancVolumeImage(context.GetWebService(), true));
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208 //pet->ScheduleLoadSeries("aabad2e7-80702b5d-e599d26c-4f13398e-38d58a9e");
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209 pet->ScheduleLoadInstance("830a69ff-8e4b5ee3-b7f966c8-bccc20fb-d322dceb"); // IBA 1
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210 //pet->ScheduleLoadInstance("337876a1-a68a9718-f15abccd-38faafa1-b99b496a"); // IBA 2
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211 //pet->ScheduleLoadInstance("830a69ff-8e4b5ee3-b7f966c8-bccc20fb-d322dceb"); // IBA 3
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212 //pet->ScheduleLoadInstance("269f26f4-0c83eeeb-2e67abbd-5467a40f-f1bec90c"); // 0522c0001 TCIA
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213
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214 const std::string s = "54460695-ba3885ee-ddf61ac0-f028e31d-a6e474d9"; // IBA
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215 //const std::string s = "17cd032b-ad92a438-ca05f06a-f9e96668-7e3e9e20"; // 0522c0001 TCIA
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216
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217 widget->AddLayer(new VolumeImageSource(*ct));
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218 widget->AddLayer(new VolumeImageSource(*pet));
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219 widget->AddLayer(new DicomStructureSetRendererFactory(context.GetWebService(), s));
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220
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221 context.AddInteractor(new Interactor(*pet, *widget, projection, 1));
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222 //context.AddInteractor(new VolumeImageInteractor(*ct, *widget, projection));
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223
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224 context.AddVolume(ct.release());
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225 context.AddVolume(pet.release());
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226
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227 {
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228 RenderStyle s;
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229 //s.drawGrid_ = true;
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230 s.alpha_ = 1;
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231 s.windowing_ = ImageWindowing_Bone;
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232 widget->SetLayerStyle(0, s);
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233 }
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234
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235 {
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236 RenderStyle s;
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237 //s.drawGrid_ = true;
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238 s.SetColor(255, 0, 0); // Draw missing PET layer in red
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239 s.alpha_ = 0.5;
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240 s.applyLut_ = true;
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241 s.lut_ = Orthanc::EmbeddedResources::COLORMAP_JET;
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242 s.interpolation_ = ImageInterpolation_Linear;
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243 s.windowing_ = ImageWindowing_Custom;
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244 s.customWindowCenter_ = 0;
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245 s.customWindowWidth_ = 128;
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246 widget->SetLayerStyle(1, s);
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247 }
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248 #endif
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249
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250
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251 statusBar.SetMessage("Use the keys \"b\", \"l\" and \"d\" to change Hounsfield windowing");
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252 statusBar.SetMessage("Use the keys \"t\" to track the (X,Y,Z) mouse coordinates");
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253 statusBar.SetMessage("Use the keys \"m\" to measure distances");
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254 statusBar.SetMessage("Use the keys \"c\" to draw circles");
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255
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256 widget->SetTransmitMouseOver(true);
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257 context.SetCentralWidget(widget.release());
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258 }
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259 };
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260 }
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261 }