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annotate Applications/Samples/SingleVolumeApplication.h @ 120:063f7f3d9f14 wasm

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fix 3d locations of the doses
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 04 Oct 2017 15:51:34 +0200
parents ba83e38cf3ff
children e66b2c757790
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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7207a407bcd8 shared copyright with osimis
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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20
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21
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22 #pragma once
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23
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24 #include "SampleApplicationBase.h"
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25 #include "../../Framework/dev.h"
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26 #include "../../Framework/Layers/ILayerSource.h"
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27 #include "../../Framework/Layers/LineMeasureTracker.h"
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28 #include "../../Framework/Layers/CircleMeasureTracker.h"
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30 #include <Core/Toolbox.h>
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31 #include <Core/Logging.h>
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33 namespace OrthancStone
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34 {
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35 namespace Samples
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36 {
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37 class SingleVolumeApplication : public SampleApplicationBase
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38 {
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39 private:
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40 class Interactor : public VolumeImageInteractor
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41 {
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42 private:
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43 LayerWidget& widget_;
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44 size_t layer_;
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45
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46 protected:
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47 virtual void NotifySliceChange(const ISlicedVolume& volume,
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48 const size_t& sliceIndex,
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49 const Slice& slice)
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50 {
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51 const OrthancVolumeImage& image = dynamic_cast<const OrthancVolumeImage&>(volume);
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52
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53 RenderStyle s = widget_.GetLayerStyle(layer_);
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54
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55 if (image.FitWindowingToRange(s, slice.GetConverter()))
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56 {
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57 //printf("Windowing: %f => %f\n", s.customWindowCenter_, s.customWindowWidth_);
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58 widget_.SetLayerStyle(layer_, s);
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59 }
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60 }
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61
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62 virtual void MouseOver(CairoContext& context,
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63 WorldSceneWidget& widget,
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64 const ViewportGeometry& view,
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65 double x,
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66 double y,
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67 IStatusBar* statusBar)
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68 {
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69 const LayerWidget& w = dynamic_cast<const LayerWidget&>(widget);
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70 Vector p = w.GetSlice().MapSliceToWorldCoordinates(x, y);
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71 printf("%f %f %f\n", p[0], p[1], p[2]);
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72 }
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73
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74 public:
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75 Interactor(OrthancVolumeImage& volume,
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76 LayerWidget& widget,
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77 VolumeProjection projection,
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78 size_t layer) :
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79 VolumeImageInteractor(volume, widget, projection),
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80 widget_(widget),
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81 layer_(layer)
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82 {
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83 printf("OOO\n");
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84 }
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85 };
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86
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87 public:
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88 virtual void DeclareCommandLineOptions(boost::program_options::options_description& options)
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89 {
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90 boost::program_options::options_description generic("Sample options");
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91 generic.add_options()
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92 ("series", boost::program_options::value<std::string>(),
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93 "Orthanc ID of the series")
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94 ("instance", boost::program_options::value<std::string>(),
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95 "Orthanc ID of a multi-frame instance that describes a 3D volume")
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96 ("threads", boost::program_options::value<unsigned int>()->default_value(3),
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97 "Number of download threads")
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98 ("projection", boost::program_options::value<std::string>()->default_value("axial"),
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99 "Projection of interest (can be axial, sagittal or coronal)")
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100 ("reverse", boost::program_options::value<bool>()->default_value(false),
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101 "Reverse the normal direction of the volume")
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102 ;
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103
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104 options.add(generic);
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105 }
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106
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107 virtual void Initialize(BasicApplicationContext& context,
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108 IStatusBar& statusBar,
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109 const boost::program_options::variables_map& parameters)
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110 {
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111 using namespace OrthancStone;
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112
117
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113 if (parameters.count("series") > 1 ||
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114 parameters.count("instance") > 1)
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115 {
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116 LOG(ERROR) << "Only one series or instance is allowed";
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117 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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118 }
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119
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120 if (parameters.count("series") == 1 &&
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121 parameters.count("instance") == 1)
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122 {
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123 LOG(ERROR) << "Cannot specify both a series and an instance";
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124 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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125 }
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126
117
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127 std::string series;
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128 if (parameters.count("series") == 1)
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129 {
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130 series = parameters["series"].as<std::string>();
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131 }
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132
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133 std::string instance;
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134 if (parameters.count("instance") == 1)
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135 {
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136 instance = parameters["instance"].as<std::string>();
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137 }
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138
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139 if (series.empty() &&
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140 instance.empty())
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141 {
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142 LOG(ERROR) << "The series ID or instance ID is missing";
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143 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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144 }
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145
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146 unsigned int threads = parameters["threads"].as<unsigned int>();
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147 bool reverse = parameters["reverse"].as<bool>();
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148
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149 std::string tmp = parameters["projection"].as<std::string>();
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150 Orthanc::Toolbox::ToLowerCase(tmp);
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151
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152 VolumeProjection projection;
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153 if (tmp == "axial")
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154 {
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155 projection = VolumeProjection_Axial;
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156 }
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157 else if (tmp == "sagittal")
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158 {
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159 projection = VolumeProjection_Sagittal;
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160 }
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161 else if (tmp == "coronal")
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162 {
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163 projection = VolumeProjection_Coronal;
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164 }
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165 else
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166 {
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167 LOG(ERROR) << "Unknown projection: " << tmp;
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168 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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169 }
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170
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171 std::auto_ptr<LayerWidget> widget(new LayerWidget);
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172
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173 #if 0
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174 std::auto_ptr<OrthancVolumeImage> volume(new OrthancVolumeImage(context.GetWebService(), true));
117
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175 if (series.empty())
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176 {
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177 volume->ScheduleLoadInstance(instance);
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178 }
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179 else
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180 {
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181 volume->ScheduleLoadSeries(series);
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182 }
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183
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184 widget->AddLayer(new VolumeImageSource(*volume));
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185
119
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186 context.AddInteractor(new Interactor(*volume, *widget, projection, 0));
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187 context.AddVolume(volume.release());
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188
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189 {
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190 RenderStyle s;
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191 s.alpha_ = 1;
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192 s.applyLut_ = true;
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193 s.lut_ = Orthanc::EmbeddedResources::COLORMAP_JET;
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194 s.interpolation_ = ImageInterpolation_Linear;
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195 widget->SetLayerStyle(0, s);
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196 }
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197 #else
119
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198 std::auto_ptr<OrthancVolumeImage> ct(new OrthancVolumeImage(context.GetWebService(), false));
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199 //ct->ScheduleLoadSeries("dd069910-4f090474-7d2bba07-e5c10783-f9e4fb1d");
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200 ct->ScheduleLoadSeries("a04ecf01-79b2fc33-58239f7e-ad9db983-28e81afa"); // IBA
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201 //ct->ScheduleLoadSeries("03677739-1d8bca40-db1daf59-d74ff548-7f6fc9c0"); // 0522c0001 TCIA
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202
119
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203 std::auto_ptr<OrthancVolumeImage> pet(new OrthancVolumeImage(context.GetWebService(), true));
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204 //pet->ScheduleLoadSeries("aabad2e7-80702b5d-e599d26c-4f13398e-38d58a9e");
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205 pet->ScheduleLoadInstance("830a69ff-8e4b5ee3-b7f966c8-bccc20fb-d322dceb"); // IBA 1
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206 //pet->ScheduleLoadInstance("337876a1-a68a9718-f15abccd-38faafa1-b99b496a"); // IBA 2
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207 //pet->ScheduleLoadInstance("830a69ff-8e4b5ee3-b7f966c8-bccc20fb-d322dceb"); // IBA 3
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208 //pet->ScheduleLoadInstance("269f26f4-0c83eeeb-2e67abbd-5467a40f-f1bec90c"); // 0522c0001 TCIA
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209
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210 widget->AddLayer(new VolumeImageSource(*ct));
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211 widget->AddLayer(new VolumeImageSource(*pet));
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212
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213 //context.AddInteractor(new Interactor(*pet, *widget, projection, 1));
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214 context.AddInteractor(new VolumeImageInteractor(*ct, *widget, projection));
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215 context.AddVolume(ct.release());
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216 context.AddVolume(pet.release());
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217
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218 {
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219 RenderStyle s;
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220 //s.drawGrid_ = true;
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221 s.alpha_ = 1;
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222 s.windowing_ = ImageWindowing_Bone;
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223 widget->SetLayerStyle(0, s);
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224 }
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225
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226 {
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227 RenderStyle s;
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228 //s.drawGrid_ = true;
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229 s.SetColor(255, 0, 0); // Draw missing PET layer in red
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230 s.alpha_ = 0.5;
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231 s.applyLut_ = true;
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232 s.lut_ = Orthanc::EmbeddedResources::COLORMAP_JET;
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233 s.interpolation_ = ImageInterpolation_Linear;
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234 s.windowing_ = ImageWindowing_Custom;
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235 s.customWindowCenter_ = 0;
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236 s.customWindowWidth_ = 128;
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237 widget->SetLayerStyle(1, s);
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238 }
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239 #endif
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240
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241
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242 statusBar.SetMessage("Use the keys \"b\", \"l\" and \"d\" to change Hounsfield windowing");
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243 statusBar.SetMessage("Use the keys \"t\" to track the (X,Y,Z) mouse coordinates");
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244 statusBar.SetMessage("Use the keys \"m\" to measure distances");
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245 statusBar.SetMessage("Use the keys \"c\" to draw circles");
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246
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247 widget->SetTransmitMouseOver(true);
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248 context.SetCentralWidget(widget.release());
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249 }
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250 };
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251 }
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252 }