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annotate Applications/Samples/SingleVolumeApplication.h @ 119:ba83e38cf3ff wasm

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rendering of rt-dose
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 02 Oct 2017 22:01:41 +0200
parents 42c05a3baee3
children 063f7f3d9f14
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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7207a407bcd8 shared copyright with osimis
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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21
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22 #pragma once
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23
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24 #include "SampleApplicationBase.h"
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25 #include "../../Framework/dev.h"
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26 #include "../../Framework/Layers/ILayerSource.h"
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27 #include "../../Framework/Layers/LineMeasureTracker.h"
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28 #include "../../Framework/Layers/CircleMeasureTracker.h"
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30 #include <Core/Toolbox.h>
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31 #include <Core/Logging.h>
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33 namespace OrthancStone
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34 {
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35 namespace Samples
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36 {
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37 class SingleVolumeApplication : public SampleApplicationBase
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38 {
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39 private:
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40 class Interactor : public VolumeImageInteractor
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41 {
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42 private:
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43 LayerWidget& widget_;
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44 size_t layer_;
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45
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46 protected:
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47 virtual void NotifySliceChange(const ISlicedVolume& volume,
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48 const size_t& sliceIndex,
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49 const Slice& slice)
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50 {
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51 const OrthancVolumeImage& image = dynamic_cast<const OrthancVolumeImage&>(volume);
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52
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53 RenderStyle s = widget_.GetLayerStyle(layer_);
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54
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55 if (image.FitWindowingToRange(s, slice.GetConverter()))
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56 {
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57 //printf("ICI: %f => %f\n", s.customWindowCenter_, s.customWindowWidth_);
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58 widget_.SetLayerStyle(layer_, s);
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59 }
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60 }
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61
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62 public:
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63 Interactor(OrthancVolumeImage& volume,
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64 LayerWidget& widget,
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65 VolumeProjection projection,
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66 size_t layer) :
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67 VolumeImageInteractor(volume, widget, projection),
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68 widget_(widget),
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69 layer_(layer)
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70 {
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71 printf("OOO\n");
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72 }
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73 };
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74
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75 public:
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76 virtual void DeclareCommandLineOptions(boost::program_options::options_description& options)
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77 {
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78 boost::program_options::options_description generic("Sample options");
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79 generic.add_options()
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80 ("series", boost::program_options::value<std::string>(),
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81 "Orthanc ID of the series")
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82 ("instance", boost::program_options::value<std::string>(),
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83 "Orthanc ID of a multi-frame instance that describes a 3D volume")
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84 ("threads", boost::program_options::value<unsigned int>()->default_value(3),
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85 "Number of download threads")
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86 ("projection", boost::program_options::value<std::string>()->default_value("axial"),
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87 "Projection of interest (can be axial, sagittal or coronal)")
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88 ("reverse", boost::program_options::value<bool>()->default_value(false),
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89 "Reverse the normal direction of the volume")
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90 ;
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91
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92 options.add(generic);
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93 }
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94
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95 virtual void Initialize(BasicApplicationContext& context,
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96 IStatusBar& statusBar,
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97 const boost::program_options::variables_map& parameters)
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98 {
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99 using namespace OrthancStone;
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100
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101 if (parameters.count("series") > 1 ||
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102 parameters.count("instance") > 1)
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103 {
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104 LOG(ERROR) << "Only one series or instance is allowed";
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105 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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106 }
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107
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108 if (parameters.count("series") == 1 &&
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109 parameters.count("instance") == 1)
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110 {
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111 LOG(ERROR) << "Cannot specify both a series and an instance";
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112 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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113 }
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114
117
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115 std::string series;
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116 if (parameters.count("series") == 1)
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117 {
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118 series = parameters["series"].as<std::string>();
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119 }
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120
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121 std::string instance;
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122 if (parameters.count("instance") == 1)
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123 {
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124 instance = parameters["instance"].as<std::string>();
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125 }
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126
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127 if (series.empty() &&
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128 instance.empty())
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129 {
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130 LOG(ERROR) << "The series ID or instance ID is missing";
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131 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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132 }
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133
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134 unsigned int threads = parameters["threads"].as<unsigned int>();
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135 bool reverse = parameters["reverse"].as<bool>();
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136
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137 std::string tmp = parameters["projection"].as<std::string>();
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138 Orthanc::Toolbox::ToLowerCase(tmp);
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139
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140 VolumeProjection projection;
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141 if (tmp == "axial")
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142 {
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143 projection = VolumeProjection_Axial;
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144 }
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145 else if (tmp == "sagittal")
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146 {
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147 projection = VolumeProjection_Sagittal;
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148 }
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149 else if (tmp == "coronal")
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150 {
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151 projection = VolumeProjection_Coronal;
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152 }
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153 else
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154 {
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155 LOG(ERROR) << "Unknown projection: " << tmp;
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156 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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157 }
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158
102
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159 std::auto_ptr<LayerWidget> widget(new LayerWidget);
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160
119
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161 #if 0
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162 std::auto_ptr<OrthancVolumeImage> volume(new OrthancVolumeImage(context.GetWebService(), true));
117
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163 if (series.empty())
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164 {
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165 volume->ScheduleLoadInstance(instance);
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166 }
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167 else
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168 {
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169 volume->ScheduleLoadSeries(series);
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170 }
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171
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172 widget->AddLayer(new VolumeImageSource(*volume));
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173
119
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174 context.AddInteractor(new Interactor(*volume, *widget, projection, 0));
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175 context.AddVolume(volume.release());
119
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176
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177 {
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178 RenderStyle s;
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179 s.alpha_ = 1;
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180 s.applyLut_ = true;
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181 s.lut_ = Orthanc::EmbeddedResources::COLORMAP_JET;
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182 s.interpolation_ = ImageInterpolation_Linear;
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183 widget->SetLayerStyle(0, s);
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184 }
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185 #else
119
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186 std::auto_ptr<OrthancVolumeImage> ct(new OrthancVolumeImage(context.GetWebService(), false));
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187 //ct->ScheduleLoadSeries("dd069910-4f090474-7d2bba07-e5c10783-f9e4fb1d");
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188 //ct->ScheduleLoadSeries("3025d8df-a82f3b00-83942fa3-ee6a6be3-a8bf32e8");
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189 ct->ScheduleLoadSeries("a04ecf01-79b2fc33-58239f7e-ad9db983-28e81afa");
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190
119
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191 std::auto_ptr<OrthancVolumeImage> pet(new OrthancVolumeImage(context.GetWebService(), true));
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192 //pet->ScheduleLoadSeries("aabad2e7-80702b5d-e599d26c-4f13398e-38d58a9e");
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193 //pet->ScheduleLoadInstance("830a69ff-8e4b5ee3-b7f966c8-bccc20fb-d322dceb");
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194 //pet->ScheduleLoadInstance("337876a1-a68a9718-f15abccd-38faafa1-b99b496a");
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195 pet->ScheduleLoadInstance("830a69ff-8e4b5ee3-b7f966c8-bccc20fb-d322dceb");
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196
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197 widget->AddLayer(new VolumeImageSource(*ct));
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198 widget->AddLayer(new VolumeImageSource(*pet));
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199
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200 context.AddInteractor(new Interactor(*pet, *widget, projection, 1));
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201 context.AddVolume(ct.release());
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202 context.AddVolume(pet.release());
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203
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204 {
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205 RenderStyle s;
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206 //s.drawGrid_ = true;
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207 s.alpha_ = 1;
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208 s.windowing_ = ImageWindowing_Bone;
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209 widget->SetLayerStyle(0, s);
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210 }
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211
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212 {
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213 RenderStyle s;
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214 //s.drawGrid_ = true;
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215 s.SetColor(255, 0, 0); // Draw missing PET layer in red
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216 s.alpha_ = 0.5;
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217 s.applyLut_ = true;
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218 s.lut_ = Orthanc::EmbeddedResources::COLORMAP_JET;
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219 s.interpolation_ = ImageInterpolation_Linear;
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220 widget->SetLayerStyle(1, s);
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221 }
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222 #endif
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223
0
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224
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225 statusBar.SetMessage("Use the keys \"b\", \"l\" and \"d\" to change Hounsfield windowing");
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226 statusBar.SetMessage("Use the keys \"t\" to track the (X,Y,Z) mouse coordinates");
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227 statusBar.SetMessage("Use the keys \"m\" to measure distances");
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228 statusBar.SetMessage("Use the keys \"c\" to draw circles");
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229
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230 widget->SetTransmitMouseOver(true);
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231 context.SetCentralWidget(widget.release());
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232 }
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233 };
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234 }
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235 }