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annotate OrthancStone/Sources/Toolbox/DicomInstanceParameters.h @ 2171:8e3c403cc643

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Improved support of the (0028,9132) tag for Philips multiframe images
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 22 Oct 2024 15:40:40 +0200
parents fe5406abd43f
children 2410a171ebfb
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #pragma once
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25
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26 #include "../Scene2D/LookupTableTextureSceneLayer.h"
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27 #include "../StoneEnumerations.h"
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28 #include "../Toolbox/CoordinateSystem3D.h"
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29 #include "Windowing.h"
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30
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31 #include <IDynamicObject.h>
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32 #include <DicomFormat/DicomImageInformation.h>
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33
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34 namespace OrthancStone
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35 {
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36 class DicomInstanceParameters :
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37 public Orthanc::IDynamicObject /* to be used as a payload to SlicesSorter */
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38 {
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39 // This class supersedes the deprecated "DicomFrameConverter"
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40
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41 private:
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42 struct Data // Plain old struct to ease the copy constructor
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43 {
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44 std::string orthancInstanceId_;
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45 std::string studyInstanceUid_;
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46 std::string seriesInstanceUid_;
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47 std::string sopInstanceUid_;
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48 SopClassUid sopClassUid_;
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49 unsigned int numberOfFrames_;
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50 unsigned int width_;
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51 unsigned int height_;
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52 bool hasSliceThickness_;
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53 double sliceThickness_;
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54 double pixelSpacingX_;
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55 double pixelSpacingY_;
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56 CoordinateSystem3D geometry_;
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57 Vector frameOffsets_;
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58 bool hasRescale_;
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59 double rescaleIntercept_;
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60 double rescaleSlope_;
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61 std::vector<Windowing> windowingPresets_;
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62 bool hasIndexInSeries_;
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63 unsigned int indexInSeries_;
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64 std::string doseUnits_;
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65 double doseGridScaling_;
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66 std::string frameOfReferenceUid_;
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67 bool hasPixelSpacing_;
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68 bool hasNumberOfFrames_;
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69 int32_t instanceNumber_;
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70 std::vector<Windowing> perFrameWindowing_;
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71
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72 explicit Data(const Orthanc::DicomMap& dicom);
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73 };
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74
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75
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76 Data data_;
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77 std::unique_ptr<Orthanc::DicomMap> tags_;
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78 std::unique_ptr<Orthanc::DicomImageInformation> imageInformation_; // Lazy evaluation
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79
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80 public:
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81 explicit DicomInstanceParameters(const DicomInstanceParameters& other) :
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82 data_(other.data_),
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83 tags_(other.tags_->Clone())
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84 {
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85 }
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86
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87 explicit DicomInstanceParameters(const Orthanc::DicomMap& dicom) :
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88 data_(dicom),
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89 tags_(dicom.Clone())
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90 {
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91 }
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92
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93 DicomInstanceParameters* Clone() const
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94 {
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95 return new DicomInstanceParameters(*this);
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96 }
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97
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98 void SetOrthancInstanceIdentifier(const std::string& id)
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99 {
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100 data_.orthancInstanceId_ = id;
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101 }
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102
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103 const std::string& GetOrthancInstanceIdentifier() const
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104 {
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105 return data_.orthancInstanceId_;
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106 }
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107
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108 const Orthanc::DicomMap& GetTags() const
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109 {
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110 return *tags_;
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111 }
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112
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113 const std::string& GetStudyInstanceUid() const
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114 {
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115 return data_.studyInstanceUid_;
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116 }
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117
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118 const std::string& GetSeriesInstanceUid() const
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119 {
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120 return data_.seriesInstanceUid_;
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121 }
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122
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123 const std::string& GetSopInstanceUid() const
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124 {
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125 return data_.sopInstanceUid_;
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126 }
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127
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128 SopClassUid GetSopClassUid() const
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129 {
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130 return data_.sopClassUid_;
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131 }
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132
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133 unsigned int GetNumberOfFrames() const
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134 {
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135 return data_.numberOfFrames_;
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136 }
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137
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138 unsigned int GetWidth() const
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139 {
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140 return data_.width_;
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141 }
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142
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143 unsigned int GetHeight() const
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144 {
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145 return data_.height_;
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146 }
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147
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148 bool HasSliceThickness() const
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149 {
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150 return data_.hasSliceThickness_;
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151 }
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152
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153 double GetSliceThickness() const;
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154
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155 double GetPixelSpacingX() const
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156 {
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157 return data_.pixelSpacingX_;
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158 }
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159
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160 double GetPixelSpacingY() const
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161 {
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162 return data_.pixelSpacingY_;
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163 }
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164
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165 const CoordinateSystem3D& GetGeometry() const
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166 {
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167 return data_.geometry_;
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168 }
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169
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170 // WARNING - Calling this method can throw exception
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171 const Orthanc::DicomImageInformation& GetImageInformation() const;
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172
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173 CoordinateSystem3D GetFrameGeometry(unsigned int frame) const;
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174
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175 bool IsPlaneWithinSlice(unsigned int frame,
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176 const CoordinateSystem3D& plane) const;
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177
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178 bool IsColor() const;
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179
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180 bool HasRescale() const
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181 {
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182 return data_.hasRescale_;
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183 }
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184
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185 double GetRescaleIntercept() const;
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186
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187 double GetRescaleSlope() const;
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188
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189 Windowing GetFallbackWindowing() const;
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190
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191 size_t GetWindowingPresetsCount() const;
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192
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193 Windowing GetWindowingPreset(size_t i) const;
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194
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195 Windowing GetWindowingPresetsUnion() const;
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196
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197 Orthanc::PixelFormat GetExpectedPixelFormat() const;
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198
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199 Orthanc::ImageAccessor* ConvertToFloat(const Orthanc::ImageAccessor& pixelData) const;
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200
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201 TextureBaseSceneLayer* CreateTexture(const Orthanc::ImageAccessor& pixelData) const;
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202
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203 LookupTableTextureSceneLayer* CreateLookupTableTexture(const Orthanc::ImageAccessor& pixelData) const;
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204
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205 // NB: According to the DICOM standard, the top-left pixel has
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206 // (originX, originY) equals to (1,1):
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207 // https://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.9.2.html
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208 LookupTableTextureSceneLayer* CreateOverlayTexture(int originX,
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209 int originY,
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210 const Orthanc::ImageAccessor& overlay) const;
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211
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212 bool HasIndexInSeries() const
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213 {
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214 return data_.hasIndexInSeries_;
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215 }
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216
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217 unsigned int GetIndexInSeries() const;
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218
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219 const std::string& GetDoseUnits() const
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220 {
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221 return data_.doseUnits_;
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222 }
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223
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224 void SetDoseGridScaling(double value)
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225 {
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226 data_.doseGridScaling_ = value;
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227 }
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228
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229 double GetDoseGridScaling() const
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230 {
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231 return data_.doseGridScaling_;
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232 }
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233
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234 void ApplyRescaleAndDoseScaling(Orthanc::ImageAccessor& image,
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235 bool useDouble) const;
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236
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237 double ApplyRescale(double value) const;
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238
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239 // Required for RT-DOSE
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240 bool ComputeFrameOffsetsSpacing(double& target) const;
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241
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242 const std::string& GetFrameOfReferenceUid() const
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243 {
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244 return data_.frameOfReferenceUid_;
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245 }
1821
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246
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247 bool HasPixelSpacing() const
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248 {
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249 return data_.hasPixelSpacing_;
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250 }
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251
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252 void SetPixelSpacing(double pixelSpacingX,
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253 double pixelSpacingY);
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254
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255 void EnrichUsingDicomWeb(const Json::Value& dicomweb);
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256
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257 bool HasNumberOfFrames() const
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258 {
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259 return data_.hasNumberOfFrames_;
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260 }
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261
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262 int32_t GetInstanceNumber() const
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263 {
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264 return data_.instanceNumber_;
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265 }
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266
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267 CoordinateSystem3D GetMultiFrameGeometry() const;
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268
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269 bool IsReversedFrameOffsets() const;
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270
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271 bool LookupPerFrameWindowing(Windowing& windowing,
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272 unsigned int frame) const;
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273 };
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274 }