Mercurial > hg > orthanc-stone
annotate Framework/Toolbox/DicomStructureSet.h @ 844:84cd55245e2d
Merge
author | Benjamin Golinvaux <bgo@osimis.io> |
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date | Fri, 14 Jun 2019 12:16:38 +0200 |
parents | 61ba4b504e9a |
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rev | line source |
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0 | 1 /** |
2 * Stone of Orthanc | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
439 | 5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
47 | 8 * modify it under the terms of the GNU Affero General Public License |
9 * as published by the Free Software Foundation, either version 3 of | |
10 * the License, or (at your option) any later version. | |
0 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
47 | 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
15 * Affero General Public License for more details. | |
16 * | |
17 * You should have received a copy of the GNU Affero General Public License | |
0 | 18 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
19 **/ | |
20 | |
21 | |
22 #pragma once | |
23 | |
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24 #include "CoordinateSystem3D.h" |
131 | 25 #include "Extent2D.h" |
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26 #include "../Scene2D/Color.h" |
0 | 27 |
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28 #include <Plugins/Samples/Common/FullOrthancDataset.h> |
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29 |
0 | 30 #include <list> |
31 | |
32 namespace OrthancStone | |
33 { | |
34 class DicomStructureSet : public boost::noncopyable | |
35 { | |
125 | 36 public: |
37 typedef std::pair<double, double> PolygonPoint; | |
38 | |
0 | 39 private: |
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40 struct ReferencedSlice |
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41 { |
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42 std::string seriesInstanceUid_; |
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43 CoordinateSystem3D geometry_; |
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44 double thickness_; |
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45 |
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46 ReferencedSlice() |
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47 { |
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48 } |
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49 |
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50 ReferencedSlice(const std::string& seriesInstanceUid, |
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51 const CoordinateSystem3D& geometry, |
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52 double thickness) : |
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53 seriesInstanceUid_(seriesInstanceUid), |
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54 geometry_(geometry), |
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55 thickness_(thickness) |
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56 { |
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57 } |
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58 }; |
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59 |
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60 typedef std::map<std::string, ReferencedSlice> ReferencedSlices; |
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61 |
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62 typedef std::vector<Vector> Points; |
0 | 63 |
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64 class Polygon |
0 | 65 { |
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66 private: |
131 | 67 std::string sopInstanceUid_; |
68 bool hasSlice_; | |
69 CoordinateSystem3D geometry_; | |
70 double projectionAlongNormal_; | |
71 double sliceThickness_; // In millimeters | |
72 Points points_; | |
73 Extent2D extent_; | |
0 | 74 |
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75 void CheckPoint(const Vector& v); |
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76 |
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77 public: |
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78 Polygon(const std::string& sopInstanceUid) : |
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79 sopInstanceUid_(sopInstanceUid), |
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80 hasSlice_(false) |
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81 { |
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82 } |
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83 |
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84 void Reserve(size_t n) |
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85 { |
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86 points_.reserve(n); |
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87 } |
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88 |
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89 void AddPoint(const Vector& v); |
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90 |
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91 bool UpdateReferencedSlice(const ReferencedSlices& slices); |
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92 |
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93 bool IsOnSlice(const CoordinateSystem3D& geometry) const; |
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94 |
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95 const std::string& GetSopInstanceUid() const |
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96 { |
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97 return sopInstanceUid_; |
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98 } |
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99 |
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100 const Points& GetPoints() const |
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101 { |
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102 return points_; |
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103 } |
126
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104 |
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105 double GetSliceThickness() const |
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106 { |
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107 return sliceThickness_; |
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108 } |
131 | 109 |
110 bool Project(double& x1, | |
111 double& y1, | |
112 double& x2, | |
113 double& y2, | |
114 const CoordinateSystem3D& slice) const; | |
0 | 115 }; |
116 | |
117 typedef std::list<Polygon> Polygons; | |
118 | |
119 struct Structure | |
120 { | |
121 std::string name_; | |
122 std::string interpretation_; | |
123 Polygons polygons_; | |
124 uint8_t red_; | |
125 uint8_t green_; | |
126 uint8_t blue_; | |
127 }; | |
128 | |
129 typedef std::vector<Structure> Structures; | |
130 | |
122
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131 Structures structures_; |
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132 ReferencedSlices referencedSlices_; |
0 | 133 |
134 const Structure& GetStructure(size_t index) const; | |
135 | |
125 | 136 Structure& GetStructure(size_t index); |
137 | |
138 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons, | |
794 | 139 const Structure& structure, |
140 const CoordinateSystem3D& slice) const; | |
0 | 141 |
142 public: | |
122
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143 DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance); |
0 | 144 |
794 | 145 size_t GetStructuresCount() const |
0 | 146 { |
147 return structures_.size(); | |
148 } | |
149 | |
150 Vector GetStructureCenter(size_t index) const; | |
151 | |
152 const std::string& GetStructureName(size_t index) const; | |
153 | |
154 const std::string& GetStructureInterpretation(size_t index) const; | |
155 | |
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156 Color GetStructureColor(size_t index) const; |
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157 |
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158 // TODO - remove |
0 | 159 void GetStructureColor(uint8_t& red, |
160 uint8_t& green, | |
161 uint8_t& blue, | |
162 size_t index) const; | |
163 | |
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164 void GetReferencedInstances(std::set<std::string>& instances); |
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165 |
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166 void AddReferencedSlice(const std::string& sopInstanceUid, |
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167 const std::string& seriesInstanceUid, |
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168 const CoordinateSystem3D& geometry, |
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169 double thickness); |
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170 |
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171 void AddReferencedSlice(const Orthanc::DicomMap& dataset); |
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172 |
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173 void CheckReferencedSlices(); |
0 | 174 |
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175 Vector GetNormal() const; |
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176 |
125 | 177 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons, |
178 size_t index, | |
794 | 179 const CoordinateSystem3D& slice) const |
0 | 180 { |
125 | 181 return ProjectStructure(polygons, GetStructure(index), slice); |
0 | 182 } |
183 }; | |
184 } |