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annotate UnitTestsSources/UnitTestsMain.cpp @ 93:5945e81734a3 wasm

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decoding of JPEG images
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 29 May 2017 17:28:31 +0200
parents f244018a4e4b
children fcec0ab44054
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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7207a407bcd8 shared copyright with osimis
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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28956ed68280 agpl license
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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22 #include "gtest/gtest.h"
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23
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24 #include "../Platforms/Generic/OracleWebService.h"
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25 #include "../Framework/Toolbox/OrthancSlicesLoader.h"
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26 #include "../Resources/Orthanc/Core/HttpClient.h"
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27 #include "../Resources/Orthanc/Core/Logging.h"
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28 #include "../Resources/Orthanc/Core/MultiThreading/SharedMessageQueue.h"
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29 #include "../Resources/Orthanc/Core/OrthancException.h"
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31 #include "../Framework/Volumes/ImageBuffer3D.h"
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32 #include "../Framework/Volumes/SlicedVolumeBase.h"
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33 #include "../Framework/Toolbox/DownloadStack.h"
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34 #include "../Resources/Orthanc/Core/Images/ImageProcessing.h"
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35
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36 #include <boost/lexical_cast.hpp>
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37 #include <boost/date_time/posix_time/posix_time.hpp>
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38 #include <boost/thread/thread.hpp>
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39
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40 namespace OrthancStone
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41 {
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42 class Tata : public OrthancSlicesLoader::ICallback
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43 {
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44 public:
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45 virtual void NotifyGeometryReady(const OrthancSlicesLoader& loader)
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46 {
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47 printf(">> %d\n", (int) loader.GetSliceCount());
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49 for (size_t i = 0; i < loader.GetSliceCount(); i++)
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50 {
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51 const_cast<OrthancSlicesLoader&>(loader).ScheduleLoadSliceImage(i, SliceImageQuality_Full);
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52 }
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53 }
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54
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55 virtual void NotifyGeometryError(const OrthancSlicesLoader& loader)
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56 {
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57 printf("Error\n");
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58 }
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59
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60 virtual void NotifySliceImageReady(const OrthancSlicesLoader& loader,
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61 unsigned int sliceIndex,
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62 const Slice& slice,
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63 Orthanc::ImageAccessor* image,
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64 SliceImageQuality quality)
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65 {
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66 std::auto_ptr<Orthanc::ImageAccessor> tmp(image);
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67 printf("Slice OK %dx%d\n", tmp->GetWidth(), tmp->GetHeight());
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68 }
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70 virtual void NotifySliceImageError(const OrthancSlicesLoader& loader,
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71 unsigned int sliceIndex,
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72 const Slice& slice,
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73 SliceImageQuality quality)
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74 {
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75 printf("ERROR 2\n");
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76 }
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77 };
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79
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80 class OrthancVolumeImage :
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81 public SlicedVolumeBase,
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82 private OrthancSlicesLoader::ICallback
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83 {
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84 private:
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85 OrthancSlicesLoader loader_;
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86 std::auto_ptr<ImageBuffer3D> image_;
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87 std::auto_ptr<DownloadStack> downloadStack_;
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88
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89
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90 void ScheduleSliceDownload()
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91 {
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92 assert(downloadStack_.get() != NULL);
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93
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94 unsigned int slice;
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95 if (downloadStack_->Pop(slice))
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96 {
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97 loader_.ScheduleLoadSliceImage(slice, SliceImageQuality_Full);
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98 }
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99 }
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100
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101
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102 static bool IsCompatible(const Slice& a,
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103 const Slice& b)
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104 {
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105 if (!GeometryToolbox::IsParallel(a.GetGeometry().GetNormal(),
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106 b.GetGeometry().GetNormal()))
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107 {
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108 LOG(ERROR) << "Some slice in the volume image is not parallel to the others";
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109 return false;
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110 }
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111
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112 if (a.GetConverter().GetExpectedPixelFormat() != b.GetConverter().GetExpectedPixelFormat())
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113 {
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114 LOG(ERROR) << "The pixel format changes across the slices of the volume image";
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115 return false;
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116 }
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117
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118 if (a.GetWidth() != b.GetWidth() ||
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119 a.GetHeight() != b.GetHeight())
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120 {
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121 LOG(ERROR) << "The width/height of the slices change across the volume image";
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122 return false;
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123 }
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124
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125 if (!GeometryToolbox::IsNear(a.GetPixelSpacingX(), b.GetPixelSpacingX()) ||
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126 !GeometryToolbox::IsNear(a.GetPixelSpacingY(), b.GetPixelSpacingY()))
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127 {
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128 LOG(ERROR) << "The pixel spacing of the slices change across the volume image";
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129 return false;
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130 }
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131
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132 return true;
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133 }
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134
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135
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136 static double GetDistance(const Slice& a,
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137 const Slice& b)
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138 {
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139 return fabs(a.GetGeometry().ProjectAlongNormal(a.GetGeometry().GetOrigin()) -
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140 a.GetGeometry().ProjectAlongNormal(b.GetGeometry().GetOrigin()));
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141 }
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diff changeset
142
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diff changeset
143
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diff changeset
144 virtual void NotifyGeometryReady(const OrthancSlicesLoader& loader)
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145 {
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146 if (loader.GetSliceCount() == 0)
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diff changeset
147 {
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148 LOG(ERROR) << "Empty volume image";
88
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149 SlicedVolumeBase::NotifyGeometryError();
87
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diff changeset
150 return;
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diff changeset
151 }
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diff changeset
152
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diff changeset
153 for (size_t i = 1; i < loader.GetSliceCount(); i++)
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154 {
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diff changeset
155 if (!IsCompatible(loader.GetSlice(0), loader.GetSlice(i)))
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156 {
88
90bf4116a23c ISlicedVolume
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diff changeset
157 SlicedVolumeBase::NotifyGeometryError();
87
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158 return;
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159 }
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160 }
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161
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162 double spacingZ;
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163
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164 if (loader.GetSliceCount() > 1)
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165 {
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166 spacingZ = GetDistance(loader.GetSlice(0), loader.GetSlice(1));
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167 }
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168 else
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169 {
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170 // This is a volume with one single slice: Choose a dummy
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171 // z-dimension for voxels
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172 spacingZ = 1;
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173 }
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174
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175 for (size_t i = 1; i < loader.GetSliceCount(); i++)
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176 {
93
5945e81734a3 decoding of JPEG images
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177 printf("%d %s %f\n", i, loader.GetSlice(i).GetOrthancInstanceId().c_str(),
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178 GetDistance(loader.GetSlice(i - 1), loader.GetSlice(i)));
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diff changeset
179
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180 if (!GeometryToolbox::IsNear(spacingZ, GetDistance(loader.GetSlice(i - 1), loader.GetSlice(i)),
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diff changeset
181 0.001 /* this is expressed in mm */))
87
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
182 {
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183 LOG(ERROR) << "The distance between successive slices is not constant in a volume image";
88
90bf4116a23c ISlicedVolume
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diff changeset
184 SlicedVolumeBase::NotifyGeometryError();
87
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diff changeset
185 return;
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186 }
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187 }
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188
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diff changeset
189 unsigned int width = loader.GetSlice(0).GetWidth();
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190 unsigned int height = loader.GetSlice(0).GetHeight();
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diff changeset
191 Orthanc::PixelFormat format = loader.GetSlice(0).GetConverter().GetExpectedPixelFormat();
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diff changeset
192 LOG(INFO) << "Creating a volume image of size " << width << "x" << height
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diff changeset
193 << "x" << loader.GetSliceCount() << " in " << Orthanc::EnumerationToString(format);
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diff changeset
194
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195 image_.reset(new ImageBuffer3D(format, width, height, loader.GetSliceCount()));
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diff changeset
196 image_->SetAxialGeometry(loader.GetSlice(0).GetGeometry());
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diff changeset
197 image_->SetVoxelDimensions(loader.GetSlice(0).GetPixelSpacingX(),
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diff changeset
198 loader.GetSlice(0).GetPixelSpacingY(), spacingZ);
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199 image_->Clear();
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200
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diff changeset
201 downloadStack_.reset(new DownloadStack(loader.GetSliceCount()));
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diff changeset
202
88
90bf4116a23c ISlicedVolume
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diff changeset
203 SlicedVolumeBase::NotifyGeometryReady();
90bf4116a23c ISlicedVolume
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diff changeset
204
87
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
205 for (unsigned int i = 0; i < 4; i++) // Limit to 4 simultaneous downloads
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
206 {
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207 ScheduleSliceDownload();
4a541cd4fa83 OrthancVolumeImageLoader
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208 }
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diff changeset
209 }
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diff changeset
210
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diff changeset
211 virtual void NotifyGeometryError(const OrthancSlicesLoader& loader)
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
212 {
4a541cd4fa83 OrthancVolumeImageLoader
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213 LOG(ERROR) << "Unable to download a volume image";
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
214 }
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diff changeset
215
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diff changeset
216 virtual void NotifySliceImageReady(const OrthancSlicesLoader& loader,
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diff changeset
217 unsigned int sliceIndex,
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
218 const Slice& slice,
93
5945e81734a3 decoding of JPEG images
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diff changeset
219 Orthanc::ImageAccessor* image,
5945e81734a3 decoding of JPEG images
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diff changeset
220 SliceImageQuality quality)
87
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
221 {
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
222 std::auto_ptr<Orthanc::ImageAccessor> protection(image);
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
223
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
224 {
88
90bf4116a23c ISlicedVolume
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parents: 87
diff changeset
225 ImageBuffer3D::SliceWriter writer(*image_, VolumeProjection_Axial, sliceIndex);
87
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
226 Orthanc::ImageProcessing::Copy(writer.GetAccessor(), *protection);
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
227 }
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
228
88
90bf4116a23c ISlicedVolume
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diff changeset
229 SlicedVolumeBase::NotifySliceChange(sliceIndex, slice);
90bf4116a23c ISlicedVolume
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parents: 87
diff changeset
230
87
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
231 ScheduleSliceDownload();
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
232 }
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
233
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
234 virtual void NotifySliceImageError(const OrthancSlicesLoader& loader,
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
235 unsigned int sliceIndex,
93
5945e81734a3 decoding of JPEG images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
236 const Slice& slice,
5945e81734a3 decoding of JPEG images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
237 SliceImageQuality quality)
87
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
238 {
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
239 LOG(ERROR) << "Cannot download slice " << sliceIndex << " in a volume image";
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
240 ScheduleSliceDownload();
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
241 }
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
242
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
243 public:
93
5945e81734a3 decoding of JPEG images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
244 OrthancVolumeImage(IWebService& orthanc) :
89
f244018a4e4b BUGGY- trying to remove IVolumeSlicesObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 88
diff changeset
245 loader_(*this, orthanc)
87
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
246 {
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
247 }
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
248
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
249 void ScheduleLoadSeries(const std::string& seriesId)
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
250 {
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
251 loader_.ScheduleLoadSeries(seriesId);
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
252 }
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
253
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
254 void ScheduleLoadInstance(const std::string& instanceId,
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
255 unsigned int frame)
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
256 {
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
257 loader_.ScheduleLoadInstance(instanceId, frame);
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
258 }
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
259
88
90bf4116a23c ISlicedVolume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
260 virtual size_t GetSliceCount() const
90bf4116a23c ISlicedVolume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
261 {
90bf4116a23c ISlicedVolume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
262 return loader_.GetSliceCount();
90bf4116a23c ISlicedVolume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
263 }
90bf4116a23c ISlicedVolume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
264
90bf4116a23c ISlicedVolume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
265 virtual const Slice& GetSlice(size_t index) const
90bf4116a23c ISlicedVolume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
266 {
90bf4116a23c ISlicedVolume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
267 return loader_.GetSlice(index);
90bf4116a23c ISlicedVolume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
268 }
93
5945e81734a3 decoding of JPEG images
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parents: 89
diff changeset
269
5945e81734a3 decoding of JPEG images
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parents: 89
diff changeset
270 ImageBuffer3D& GetImage()
5945e81734a3 decoding of JPEG images
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diff changeset
271 {
5945e81734a3 decoding of JPEG images
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parents: 89
diff changeset
272 if (image_.get() == NULL)
5945e81734a3 decoding of JPEG images
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diff changeset
273 {
5945e81734a3 decoding of JPEG images
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parents: 89
diff changeset
274 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
5945e81734a3 decoding of JPEG images
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diff changeset
275 }
5945e81734a3 decoding of JPEG images
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parents: 89
diff changeset
276 else
5945e81734a3 decoding of JPEG images
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parents: 89
diff changeset
277 {
5945e81734a3 decoding of JPEG images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
278 return *image_;
5945e81734a3 decoding of JPEG images
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diff changeset
279 }
5945e81734a3 decoding of JPEG images
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parents: 89
diff changeset
280 }
87
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
281 };
65
885932a893de OrthancFrameLayerSource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
282 }
885932a893de OrthancFrameLayerSource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
283
885932a893de OrthancFrameLayerSource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
284
87
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285 TEST(Toto, DISABLED_Tutu)
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286 {
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287 OrthancStone::Oracle oracle(4);
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288 oracle.Start();
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289
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290 Orthanc::WebServiceParameters web;
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291 //OrthancStone::OrthancAsynchronousWebService orthanc(web, 4);
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292 OrthancStone::OracleWebService orthanc(oracle, web);
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293 //orthanc.Start();
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294
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295 OrthancStone::Tata tata;
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296 OrthancStone::OrthancSlicesLoader loader(tata, orthanc);
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297 loader.ScheduleLoadSeries("c1c4cb95-05e3bd11-8da9f5bb-87278f71-0b2b43f5");
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298 //loader.ScheduleLoadSeries("67f1b334-02c16752-45026e40-a5b60b6b-030ecab5");
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299
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300 //loader.ScheduleLoadInstance("19816330-cb02e1cf-df3a8fe8-bf510623-ccefe9f5", 0);
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301
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302 /*printf(">> %d\n", loader.GetSliceCount());
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303 loader.ScheduleLoadSliceImage(31);*/
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304
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305 boost::this_thread::sleep(boost::posix_time::milliseconds(1000));
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306
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307 //orthanc.Stop();
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308 oracle.Stop();
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309 }
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310
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311
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312 TEST(Toto, Tata)
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313 {
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314 OrthancStone::Oracle oracle(4);
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315 oracle.Start();
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316
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317 Orthanc::WebServiceParameters web;
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318 OrthancStone::OracleWebService orthanc(oracle, web);
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319 OrthancStone::OrthancVolumeImage volume(orthanc);
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320
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321 //volume.ScheduleLoadInstance("19816330-cb02e1cf-df3a8fe8-bf510623-ccefe9f5", 0);
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322 //volume.ScheduleLoadSeries("318603c5-03e8cffc-a82b6ee1-3ccd3c1e-18d7e3bb"); // COMUNIX PET
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323 //volume.ScheduleLoadSeries("7124dba7-09803f33-98b73826-33f14632-ea842d29"); // COMUNIX CT
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324 //volume.ScheduleLoadSeries("5990e39c-51e5f201-fe87a54c-31a55943-e59ef80e"); // Delphine sagital
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325 volume.ScheduleLoadSeries("6f1b492a-e181e200-44e51840-ef8db55e-af529ab6"); // Delphine ax 2.5
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326
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327 boost::this_thread::sleep(boost::posix_time::milliseconds(1000));
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328
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329 oracle.Stop();
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330 }
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331
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332
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333 int main(int argc, char **argv)
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334 {
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335 Orthanc::Logging::Initialize();
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336 Orthanc::Logging::EnableInfoLevel(true);
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337
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338 ::testing::InitGoogleTest(&argc, argv);
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339 int result = RUN_ALL_TESTS();
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340
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341 Orthanc::Logging::Finalize();
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342
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343 return result;
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344 }