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annotate UnitTestsSources/UnitTestsMain.cpp @ 89:f244018a4e4b wasm

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BUGGY- trying to remove IVolumeSlicesObserver
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 26 May 2017 18:27:59 +0200
parents 90bf4116a23c
children 5945e81734a3
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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7207a407bcd8 shared copyright with osimis
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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28956ed68280 agpl license
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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22 #include "gtest/gtest.h"
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23
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24 #include "../Platforms/Generic/OracleWebService.h"
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25 #include "../Framework/Toolbox/OrthancSlicesLoader.h"
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26 #include "../Resources/Orthanc/Core/HttpClient.h"
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27 #include "../Resources/Orthanc/Core/Logging.h"
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28 #include "../Resources/Orthanc/Core/MultiThreading/SharedMessageQueue.h"
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29 #include "../Resources/Orthanc/Core/OrthancException.h"
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30
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31 #include "../Framework/Volumes/ImageBuffer3D.h"
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32 #include "../Framework/Volumes/SlicedVolumeBase.h"
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33 #include "../Framework/Toolbox/DownloadStack.h"
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34 #include "../Resources/Orthanc/Core/Images/ImageProcessing.h"
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35
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36 #include <boost/lexical_cast.hpp>
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37 #include <boost/date_time/posix_time/posix_time.hpp>
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38 #include <boost/thread/thread.hpp>
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39
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40 namespace OrthancStone
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41 {
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42 class Tata : public OrthancSlicesLoader::ICallback
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43 {
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44 public:
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45 virtual void NotifyGeometryReady(const OrthancSlicesLoader& loader)
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46 {
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47 printf(">> %d\n", (int) loader.GetSliceCount());
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49 for (size_t i = 0; i < loader.GetSliceCount(); i++)
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50 {
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51 const_cast<OrthancSlicesLoader&>(loader).ScheduleLoadSliceImage(i);
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52 }
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53 }
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54
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55 virtual void NotifyGeometryError(const OrthancSlicesLoader& loader)
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56 {
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57 printf("Error\n");
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58 }
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60 virtual void NotifySliceImageReady(const OrthancSlicesLoader& loader,
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61 unsigned int sliceIndex,
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62 const Slice& slice,
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63 Orthanc::ImageAccessor* image)
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64 {
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65 std::auto_ptr<Orthanc::ImageAccessor> tmp(image);
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66 printf("Slice OK %dx%d\n", tmp->GetWidth(), tmp->GetHeight());
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67 }
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69 virtual void NotifySliceImageError(const OrthancSlicesLoader& loader,
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70 unsigned int sliceIndex,
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71 const Slice& slice)
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72 {
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73 printf("ERROR 2\n");
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74 }
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75 };
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77
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78 class OrthancVolumeImageLoader :
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79 public SlicedVolumeBase,
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80 private OrthancSlicesLoader::ICallback
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81 {
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82 private:
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83 OrthancSlicesLoader loader_;
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84 std::auto_ptr<ImageBuffer3D> image_;
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85 std::auto_ptr<DownloadStack> downloadStack_;
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86
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87
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88 void ScheduleSliceDownload()
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89 {
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90 assert(downloadStack_.get() != NULL);
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91
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92 unsigned int slice;
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93 if (downloadStack_->Pop(slice))
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94 {
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95 loader_.ScheduleLoadSliceImage(slice);
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96 }
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97 }
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98
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99
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100 static bool IsCompatible(const Slice& a,
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101 const Slice& b)
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102 {
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103 if (!GeometryToolbox::IsParallel(a.GetGeometry().GetNormal(),
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104 b.GetGeometry().GetNormal()))
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105 {
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106 LOG(ERROR) << "Some slice in the volume image is not parallel to the others";
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107 return false;
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108 }
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109
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110 if (a.GetConverter().GetExpectedPixelFormat() != b.GetConverter().GetExpectedPixelFormat())
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111 {
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112 LOG(ERROR) << "The pixel format changes across the slices of the volume image";
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113 return false;
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114 }
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115
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116 if (a.GetWidth() != b.GetWidth() ||
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117 a.GetHeight() != b.GetHeight())
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118 {
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119 LOG(ERROR) << "The width/height of the slices change across the volume image";
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120 return false;
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121 }
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122
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123 if (!GeometryToolbox::IsNear(a.GetPixelSpacingX(), b.GetPixelSpacingX()) ||
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124 !GeometryToolbox::IsNear(a.GetPixelSpacingY(), b.GetPixelSpacingY()))
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125 {
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126 LOG(ERROR) << "The pixel spacing of the slices change across the volume image";
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127 return false;
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128 }
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129
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130 return true;
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131 }
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132
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133
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134 static double GetDistance(const Slice& a,
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135 const Slice& b)
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136 {
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137 return fabs(a.GetGeometry().ProjectAlongNormal(a.GetGeometry().GetOrigin()) -
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138 a.GetGeometry().ProjectAlongNormal(b.GetGeometry().GetOrigin()));
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139 }
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140
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141
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142 virtual void NotifyGeometryReady(const OrthancSlicesLoader& loader)
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143 {
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144 if (loader.GetSliceCount() == 0)
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145 {
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146 LOG(ERROR) << "Empty volume image";
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147 SlicedVolumeBase::NotifyGeometryError();
87
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148 return;
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149 }
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150
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151 for (size_t i = 1; i < loader.GetSliceCount(); i++)
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152 {
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153 if (!IsCompatible(loader.GetSlice(0), loader.GetSlice(i)))
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154 {
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155 SlicedVolumeBase::NotifyGeometryError();
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156 return;
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157 }
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158 }
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159
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160 double spacingZ;
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161
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162 if (loader.GetSliceCount() > 1)
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163 {
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164 spacingZ = GetDistance(loader.GetSlice(0), loader.GetSlice(1));
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165 }
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166 else
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167 {
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168 // This is a volume with one single slice: Choose a dummy
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169 // z-dimension for voxels
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170 spacingZ = 1;
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171 }
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172
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173 for (size_t i = 1; i < loader.GetSliceCount(); i++)
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174 {
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175 if (!GeometryToolbox::IsNear(spacingZ, GetDistance(loader.GetSlice(i - 1), loader.GetSlice(i))))
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176 {
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177 LOG(ERROR) << "The distance between successive slices is not constant in a volume image";
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178 SlicedVolumeBase::NotifyGeometryError();
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179 return;
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180 }
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181 }
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182
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183 unsigned int width = loader.GetSlice(0).GetWidth();
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184 unsigned int height = loader.GetSlice(0).GetHeight();
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185 Orthanc::PixelFormat format = loader.GetSlice(0).GetConverter().GetExpectedPixelFormat();
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186 LOG(INFO) << "Creating a volume image of size " << width << "x" << height
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187 << "x" << loader.GetSliceCount() << " in " << Orthanc::EnumerationToString(format);
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188
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189 image_.reset(new ImageBuffer3D(format, width, height, loader.GetSliceCount()));
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190 image_->SetAxialGeometry(loader.GetSlice(0).GetGeometry());
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191 image_->SetVoxelDimensions(loader.GetSlice(0).GetPixelSpacingX(),
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192 loader.GetSlice(0).GetPixelSpacingY(), spacingZ);
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193 image_->Clear();
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194
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195 downloadStack_.reset(new DownloadStack(loader.GetSliceCount()));
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196
88
90bf4116a23c ISlicedVolume
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197 SlicedVolumeBase::NotifyGeometryReady();
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198
87
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199 for (unsigned int i = 0; i < 4; i++) // Limit to 4 simultaneous downloads
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200 {
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201 ScheduleSliceDownload();
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202 }
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203 }
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204
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205 virtual void NotifyGeometryError(const OrthancSlicesLoader& loader)
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206 {
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207 LOG(ERROR) << "Unable to download a volume image";
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208 }
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209
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210 virtual void NotifySliceImageReady(const OrthancSlicesLoader& loader,
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211 unsigned int sliceIndex,
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212 const Slice& slice,
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213 Orthanc::ImageAccessor* image)
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214 {
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215 std::auto_ptr<Orthanc::ImageAccessor> protection(image);
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216
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217 {
88
90bf4116a23c ISlicedVolume
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diff changeset
218 ImageBuffer3D::SliceWriter writer(*image_, VolumeProjection_Axial, sliceIndex);
87
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219 Orthanc::ImageProcessing::Copy(writer.GetAccessor(), *protection);
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220 }
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221
88
90bf4116a23c ISlicedVolume
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222 SlicedVolumeBase::NotifySliceChange(sliceIndex, slice);
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223
87
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224 ScheduleSliceDownload();
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225 }
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226
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diff changeset
227 virtual void NotifySliceImageError(const OrthancSlicesLoader& loader,
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228 unsigned int sliceIndex,
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229 const Slice& slice)
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230 {
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231 LOG(ERROR) << "Cannot download slice " << sliceIndex << " in a volume image";
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232 ScheduleSliceDownload();
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233 }
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234
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235 public:
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236 OrthancVolumeImageLoader(IWebService& orthanc) :
89
f244018a4e4b BUGGY- trying to remove IVolumeSlicesObserver
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diff changeset
237 loader_(*this, orthanc)
87
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238 {
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239 }
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240
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diff changeset
241 void ScheduleLoadSeries(const std::string& seriesId)
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242 {
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243 loader_.ScheduleLoadSeries(seriesId);
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244 }
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245
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246 void ScheduleLoadInstance(const std::string& instanceId,
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diff changeset
247 unsigned int frame)
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248 {
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249 loader_.ScheduleLoadInstance(instanceId, frame);
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250 }
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251
88
90bf4116a23c ISlicedVolume
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252 virtual size_t GetSliceCount() const
90bf4116a23c ISlicedVolume
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253 {
90bf4116a23c ISlicedVolume
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254 return loader_.GetSliceCount();
90bf4116a23c ISlicedVolume
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diff changeset
255 }
90bf4116a23c ISlicedVolume
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diff changeset
256
90bf4116a23c ISlicedVolume
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diff changeset
257 virtual const Slice& GetSlice(size_t index) const
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258 {
90bf4116a23c ISlicedVolume
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259 return loader_.GetSlice(index);
90bf4116a23c ISlicedVolume
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260 }
87
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
261 };
65
885932a893de OrthancFrameLayerSource
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diff changeset
262 }
885932a893de OrthancFrameLayerSource
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diff changeset
263
885932a893de OrthancFrameLayerSource
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diff changeset
264
87
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
265 TEST(Toto, DISABLED_Tutu)
65
885932a893de OrthancFrameLayerSource
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diff changeset
266 {
80
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diff changeset
267 OrthancStone::Oracle oracle(4);
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diff changeset
268 oracle.Start();
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269
65
885932a893de OrthancFrameLayerSource
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diff changeset
270 Orthanc::WebServiceParameters web;
80
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diff changeset
271 //OrthancStone::OrthancAsynchronousWebService orthanc(web, 4);
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272 OrthancStone::OracleWebService orthanc(oracle, web);
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273 //orthanc.Start();
65
885932a893de OrthancFrameLayerSource
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274
885932a893de OrthancFrameLayerSource
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diff changeset
275 OrthancStone::Tata tata;
72
c1cc3bdba18c cleaning up OrthancSlicesLoader
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diff changeset
276 OrthancStone::OrthancSlicesLoader loader(tata, orthanc);
80
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diff changeset
277 loader.ScheduleLoadSeries("c1c4cb95-05e3bd11-8da9f5bb-87278f71-0b2b43f5");
77
f5f54ed8d307 refactoring
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diff changeset
278 //loader.ScheduleLoadSeries("67f1b334-02c16752-45026e40-a5b60b6b-030ecab5");
71
30c768873d47 OrthancSliceLoader::ScheduleLoadInstance
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diff changeset
279
80
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diff changeset
280 //loader.ScheduleLoadInstance("19816330-cb02e1cf-df3a8fe8-bf510623-ccefe9f5", 0);
68
1526d38ef6da SliceSorter
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diff changeset
281
70
f73aed014bde OrthancAsynchronousWebService
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diff changeset
282 /*printf(">> %d\n", loader.GetSliceCount());
f73aed014bde OrthancAsynchronousWebService
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diff changeset
283 loader.ScheduleLoadSliceImage(31);*/
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284
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285 boost::this_thread::sleep(boost::posix_time::milliseconds(1000));
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286
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287 //orthanc.Stop();
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288 oracle.Stop();
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289 }
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290
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291
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292 TEST(Toto, Tata)
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293 {
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294 OrthancStone::Oracle oracle(4);
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295 oracle.Start();
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296
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297 Orthanc::WebServiceParameters web;
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298 OrthancStone::OracleWebService orthanc(oracle, web);
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299 OrthancStone::OrthancVolumeImageLoader volume(orthanc);
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300
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301 volume.ScheduleLoadInstance("19816330-cb02e1cf-df3a8fe8-bf510623-ccefe9f5", 0);
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302 //volume.ScheduleLoadSeries("318603c5-03e8cffc-a82b6ee1-3ccd3c1e-18d7e3bb"); // COMUNIX PET
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303 //volume.ScheduleLoadSeries("5990e39c-51e5f201-fe87a54c-31a55943-e59ef80e"); // Delphine sagital
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304
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305 boost::this_thread::sleep(boost::posix_time::milliseconds(1000));
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306
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307 oracle.Stop();
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308 }
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309
20
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310
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311 int main(int argc, char **argv)
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312 {
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313 Orthanc::Logging::Initialize();
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314 Orthanc::Logging::EnableInfoLevel(true);
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315
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316 ::testing::InitGoogleTest(&argc, argv);
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317 int result = RUN_ALL_TESTS();
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318
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319 Orthanc::Logging::Finalize();
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320
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321 return result;
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322 }