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annotate UnitTestsSources/UnitTestsMain.cpp @ 87:4a541cd4fa83 wasm

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OrthancVolumeImageLoader
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 26 May 2017 15:31:58 +0200
parents cee8f308a4bc
children 90bf4116a23c
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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7207a407bcd8 shared copyright with osimis
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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28956ed68280 agpl license
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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22 #include "gtest/gtest.h"
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23
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24 #include "../Platforms/Generic/OracleWebService.h"
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25 #include "../Framework/Toolbox/OrthancSlicesLoader.h"
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26 #include "../Resources/Orthanc/Core/HttpClient.h"
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27 #include "../Resources/Orthanc/Core/Logging.h"
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28 #include "../Resources/Orthanc/Core/MultiThreading/SharedMessageQueue.h"
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29 #include "../Resources/Orthanc/Core/OrthancException.h"
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31 #include "../Framework/Toolbox/IVolumeSlicesObserver.h"
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32 #include "../Framework/Volumes/ImageBuffer3D.h"
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33 #include "../Framework/Toolbox/DownloadStack.h"
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34 #include "../Resources/Orthanc/Core/Images/ImageProcessing.h"
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35
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36 #include <boost/lexical_cast.hpp>
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37 #include <boost/date_time/posix_time/posix_time.hpp>
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38 #include <boost/thread/thread.hpp>
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39
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40 namespace OrthancStone
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41 {
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42 class Tata : public OrthancSlicesLoader::ICallback
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43 {
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44 public:
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45 virtual void NotifyGeometryReady(const OrthancSlicesLoader& loader)
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46 {
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47 printf(">> %d\n", (int) loader.GetSliceCount());
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49 for (size_t i = 0; i < loader.GetSliceCount(); i++)
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50 {
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51 const_cast<OrthancSlicesLoader&>(loader).ScheduleLoadSliceImage(i);
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52 }
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53 }
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54
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55 virtual void NotifyGeometryError(const OrthancSlicesLoader& loader)
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56 {
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57 printf("Error\n");
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58 }
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60 virtual void NotifySliceImageReady(const OrthancSlicesLoader& loader,
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61 unsigned int sliceIndex,
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62 const Slice& slice,
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63 Orthanc::ImageAccessor* image)
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64 {
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65 std::auto_ptr<Orthanc::ImageAccessor> tmp(image);
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66 printf("Slice OK %dx%d\n", tmp->GetWidth(), tmp->GetHeight());
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67 }
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69 virtual void NotifySliceImageError(const OrthancSlicesLoader& loader,
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70 unsigned int sliceIndex,
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71 const Slice& slice)
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72 {
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73 printf("ERROR 2\n");
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74 }
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75 };
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78 class OrthancVolumeImageLoader : private OrthancSlicesLoader::ICallback
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79 {
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80 private:
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81 OrthancSlicesLoader loader_;
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82 IVolumeSlicesObserver* observer_;
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83 std::auto_ptr<ImageBuffer3D> image_;
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84 std::auto_ptr<DownloadStack> downloadStack_;
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85
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86
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87 void ScheduleSliceDownload()
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88 {
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89 assert(downloadStack_.get() != NULL);
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90
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91 unsigned int slice;
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92 if (downloadStack_->Pop(slice))
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93 {
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94 loader_.ScheduleLoadSliceImage(slice);
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95 }
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96 }
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97
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98
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99 static bool IsCompatible(const Slice& a,
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100 const Slice& b)
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101 {
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102 if (!GeometryToolbox::IsParallel(a.GetGeometry().GetNormal(),
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103 b.GetGeometry().GetNormal()))
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104 {
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105 LOG(ERROR) << "Some slice in the volume image is not parallel to the others";
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106 return false;
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107 }
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108
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109 if (a.GetConverter().GetExpectedPixelFormat() != b.GetConverter().GetExpectedPixelFormat())
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110 {
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111 LOG(ERROR) << "The pixel format changes across the slices of the volume image";
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112 return false;
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113 }
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114
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115 if (a.GetWidth() != b.GetWidth() ||
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116 a.GetHeight() != b.GetHeight())
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117 {
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118 LOG(ERROR) << "The width/height of the slices change across the volume image";
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119 return false;
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120 }
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121
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122 if (!GeometryToolbox::IsNear(a.GetPixelSpacingX(), b.GetPixelSpacingX()) ||
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123 !GeometryToolbox::IsNear(a.GetPixelSpacingY(), b.GetPixelSpacingY()))
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124 {
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125 LOG(ERROR) << "The pixel spacing of the slices change across the volume image";
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126 return false;
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127 }
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128
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129 return true;
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130 }
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131
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132
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133 static double GetDistance(const Slice& a,
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134 const Slice& b)
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135 {
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136 return fabs(a.GetGeometry().ProjectAlongNormal(a.GetGeometry().GetOrigin()) -
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137 a.GetGeometry().ProjectAlongNormal(b.GetGeometry().GetOrigin()));
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138 }
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139
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140
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141 virtual void NotifyGeometryReady(const OrthancSlicesLoader& loader)
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142 {
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143 if (loader.GetSliceCount() == 0)
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144 {
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145 LOG(ERROR) << "Empty volume image";
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146 return;
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147 }
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148
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149 for (size_t i = 1; i < loader.GetSliceCount(); i++)
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150 {
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151 if (!IsCompatible(loader.GetSlice(0), loader.GetSlice(i)))
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152 {
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153 return;
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154 }
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155 }
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156
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157 double spacingZ;
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158
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159 if (loader.GetSliceCount() > 1)
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160 {
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161 spacingZ = GetDistance(loader.GetSlice(0), loader.GetSlice(1));
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162 }
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163 else
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164 {
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165 // This is a volume with one single slice: Choose a dummy
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166 // z-dimension for voxels
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167 spacingZ = 1;
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168 }
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169
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170 for (size_t i = 1; i < loader.GetSliceCount(); i++)
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171 {
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172 if (!GeometryToolbox::IsNear(spacingZ, GetDistance(loader.GetSlice(i - 1), loader.GetSlice(i))))
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173 {
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174 LOG(ERROR) << "The distance between successive slices is not constant in a volume image";
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175 return;
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176 }
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177 }
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178
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179 unsigned int width = loader.GetSlice(0).GetWidth();
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180 unsigned int height = loader.GetSlice(0).GetHeight();
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181 Orthanc::PixelFormat format = loader.GetSlice(0).GetConverter().GetExpectedPixelFormat();
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182 LOG(INFO) << "Creating a volume image of size " << width << "x" << height
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183 << "x" << loader.GetSliceCount() << " in " << Orthanc::EnumerationToString(format);
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184
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185 image_.reset(new ImageBuffer3D(format, width, height, loader.GetSliceCount()));
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186 image_->SetAxialGeometry(loader.GetSlice(0).GetGeometry());
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187 image_->SetVoxelDimensions(loader.GetSlice(0).GetPixelSpacingX(),
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188 loader.GetSlice(0).GetPixelSpacingY(), spacingZ);
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189 image_->Clear();
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190
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191 downloadStack_.reset(new DownloadStack(loader.GetSliceCount()));
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192
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193 for (unsigned int i = 0; i < 4; i++) // Limit to 4 simultaneous downloads
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194 {
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195 ScheduleSliceDownload();
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196 }
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197 }
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198
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199 virtual void NotifyGeometryError(const OrthancSlicesLoader& loader)
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200 {
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201 LOG(ERROR) << "Unable to download a volume image";
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202 }
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203
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204 virtual void NotifySliceImageReady(const OrthancSlicesLoader& loader,
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205 unsigned int sliceIndex,
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206 const Slice& slice,
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207 Orthanc::ImageAccessor* image)
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208 {
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209 std::auto_ptr<Orthanc::ImageAccessor> protection(image);
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210
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211 {
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212 ImageBuffer3D::SliceWriter writer(*image_, VolumeProjection_Axial, 0);
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213 Orthanc::ImageProcessing::Copy(writer.GetAccessor(), *protection);
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214 }
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215
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216 ScheduleSliceDownload();
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217 }
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diff changeset
218
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219 virtual void NotifySliceImageError(const OrthancSlicesLoader& loader,
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220 unsigned int sliceIndex,
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221 const Slice& slice)
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222 {
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223 LOG(ERROR) << "Cannot download slice " << sliceIndex << " in a volume image";
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224 ScheduleSliceDownload();
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diff changeset
225 }
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diff changeset
226
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227 public:
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228 OrthancVolumeImageLoader(IWebService& orthanc) :
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229 loader_(*this, orthanc),
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diff changeset
230 observer_(NULL)
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
231 {
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
232 }
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diff changeset
233
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diff changeset
234 void ScheduleLoadSeries(const std::string& seriesId)
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
235 {
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
236 loader_.ScheduleLoadSeries(seriesId);
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
237 }
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diff changeset
238
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diff changeset
239 void ScheduleLoadInstance(const std::string& instanceId,
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diff changeset
240 unsigned int frame)
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diff changeset
241 {
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parents: 82
diff changeset
242 loader_.ScheduleLoadInstance(instanceId, frame);
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
243 }
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diff changeset
244
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
245 void SetObserver(IVolumeSlicesObserver& observer)
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diff changeset
246 {
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
247 if (observer_ == NULL)
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
248 {
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
249 observer_ = &observer;
4a541cd4fa83 OrthancVolumeImageLoader
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250 }
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
251 else
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parents: 82
diff changeset
252 {
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
253 // Cannot add more than one observer
4a541cd4fa83 OrthancVolumeImageLoader
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diff changeset
254 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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255 }
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
256 }
4a541cd4fa83 OrthancVolumeImageLoader
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parents: 82
diff changeset
257
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
258 };
65
885932a893de OrthancFrameLayerSource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
259 }
885932a893de OrthancFrameLayerSource
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parents: 47
diff changeset
260
885932a893de OrthancFrameLayerSource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
261
87
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 82
diff changeset
262 TEST(Toto, DISABLED_Tutu)
65
885932a893de OrthancFrameLayerSource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
263 {
80
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 77
diff changeset
264 OrthancStone::Oracle oracle(4);
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
265 oracle.Start();
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 77
diff changeset
266
65
885932a893de OrthancFrameLayerSource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
267 Orthanc::WebServiceParameters web;
80
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
268 //OrthancStone::OrthancAsynchronousWebService orthanc(web, 4);
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diff changeset
269 OrthancStone::OracleWebService orthanc(oracle, web);
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
270 //orthanc.Start();
65
885932a893de OrthancFrameLayerSource
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diff changeset
271
885932a893de OrthancFrameLayerSource
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parents: 47
diff changeset
272 OrthancStone::Tata tata;
72
c1cc3bdba18c cleaning up OrthancSlicesLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 71
diff changeset
273 OrthancStone::OrthancSlicesLoader loader(tata, orthanc);
80
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 77
diff changeset
274 loader.ScheduleLoadSeries("c1c4cb95-05e3bd11-8da9f5bb-87278f71-0b2b43f5");
77
f5f54ed8d307 refactoring
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parents: 73
diff changeset
275 //loader.ScheduleLoadSeries("67f1b334-02c16752-45026e40-a5b60b6b-030ecab5");
71
30c768873d47 OrthancSliceLoader::ScheduleLoadInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
276
80
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 77
diff changeset
277 //loader.ScheduleLoadInstance("19816330-cb02e1cf-df3a8fe8-bf510623-ccefe9f5", 0);
68
1526d38ef6da SliceSorter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
278
70
f73aed014bde OrthancAsynchronousWebService
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parents: 69
diff changeset
279 /*printf(">> %d\n", loader.GetSliceCount());
f73aed014bde OrthancAsynchronousWebService
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parents: 69
diff changeset
280 loader.ScheduleLoadSliceImage(31);*/
f73aed014bde OrthancAsynchronousWebService
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diff changeset
281
f73aed014bde OrthancAsynchronousWebService
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diff changeset
282 boost::this_thread::sleep(boost::posix_time::milliseconds(1000));
f73aed014bde OrthancAsynchronousWebService
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parents: 69
diff changeset
283
80
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
284 //orthanc.Stop();
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285 oracle.Stop();
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286 }
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287
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288
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289 TEST(Toto, Tata)
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290 {
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291 OrthancStone::Oracle oracle(4);
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292 oracle.Start();
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293
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294 Orthanc::WebServiceParameters web;
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295 OrthancStone::OracleWebService orthanc(oracle, web);
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296 OrthancStone::OrthancVolumeImageLoader volume(orthanc);
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297
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298 volume.ScheduleLoadInstance("19816330-cb02e1cf-df3a8fe8-bf510623-ccefe9f5", 0);
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299 //volume.ScheduleLoadSeries("318603c5-03e8cffc-a82b6ee1-3ccd3c1e-18d7e3bb"); // COMUNIX PET
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300 //volume.ScheduleLoadSeries("5990e39c-51e5f201-fe87a54c-31a55943-e59ef80e"); // Delphine sagital
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301
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302 boost::this_thread::sleep(boost::posix_time::milliseconds(1000));
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303
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304 oracle.Stop();
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305 }
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306
20
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307
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308 int main(int argc, char **argv)
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309 {
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310 Orthanc::Logging::Initialize();
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311 Orthanc::Logging::EnableInfoLevel(true);
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312
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313 ::testing::InitGoogleTest(&argc, argv);
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314 int result = RUN_ALL_TESTS();
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315
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316 Orthanc::Logging::Finalize();
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317
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318 return result;
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319 }