Mercurial > hg > orthanc-stone

annotate Applications/Samples/SingleVolumeApplication.h @ 1327:4f8db2d202c8 broker

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OrthancSeriesProgressiveLoader now has two modes that can be selected at object creation : - progressive (will first load jpeg50, then jpeg90 then PAM) - non-progressive (will directly load PAM (uncompressed)) Please note that the slice loading order remains dynamic and depending upon the slice that the client code wishes to extract from the volume.
author Benjamin Golinvaux <bgo@osimis.io>
date Wed, 25 Mar 2020 14:34:27 +0100
parents 8a0a62189f46
children
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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22 #pragma once
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23
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24 #include "SampleApplicationBase.h"
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25 #include "../../Framework/dev.h"
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26 #include "../../Framework/Layers/LineMeasureTracker.h"
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27 #include "../../Framework/Layers/CircleMeasureTracker.h"
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29 #include <Core/Toolbox.h>
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30 #include <Core/Logging.h>
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32 #include <Plugins/Samples/Common/OrthancHttpConnection.h> // TODO REMOVE
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33 #include "../../Framework/Layers/DicomStructureSetSlicer.h" // TODO REMOVE
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34 #include "../../Framework/Toolbox/MessagingToolbox.h" // TODO REMOVE
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36 namespace OrthancStone
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37 {
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38 namespace Samples
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39 {
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40 class SingleVolumeApplication : public SampleApplicationBase
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41 {
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42 private:
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43 class Interactor : public VolumeImageInteractor
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44 {
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45 private:
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46 SliceViewerWidget& widget_;
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47 size_t layer_;
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48
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49 protected:
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50 virtual void NotifySliceContentChange(const ISlicedVolume& volume,
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51 const size_t& sliceIndex,
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52 const Slice& slice)
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53 {
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54 const OrthancVolumeImage& image = dynamic_cast<const OrthancVolumeImage&>(volume);
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56 RenderStyle s = widget_.GetLayerStyle(layer_);
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58 if (image.FitWindowingToRange(s, slice.GetConverter()))
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59 {
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60 //printf("Windowing: %f => %f\n", s.customWindowCenter_, s.customWindowWidth_);
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61 widget_.SetLayerStyle(layer_, s);
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62 }
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63 }
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64
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65 virtual void MouseOver(CairoContext& context,
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66 WorldSceneWidget& widget,
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67 const ViewportGeometry& view,
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68 double x,
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69 double y,
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70 IStatusBar* statusBar)
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71 {
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72 const SliceViewerWidget& w = dynamic_cast<const SliceViewerWidget&>(widget);
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73 Vector p = w.GetSlice().MapSliceToWorldCoordinates(x, y);
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74 printf("%f %f %f\n", p[0], p[1], p[2]);
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75 }
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77 public:
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78 Interactor(OrthancVolumeImage& volume,
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79 SliceViewerWidget& widget,
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80 VolumeProjection projection,
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81 size_t layer) :
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82 VolumeImageInteractor(volume, widget, projection),
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83 widget_(widget),
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84 layer_(layer)
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85 {
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86 }
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87 };
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90 public:
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91 virtual void DeclareStartupOptions(boost::program_options::options_description& options)
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92 {
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93 boost::program_options::options_description generic("Sample options");
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94 generic.add_options()
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95 ("series", boost::program_options::value<std::string>(),
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96 "Orthanc ID of the series")
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97 ("instance", boost::program_options::value<std::string>(),
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98 "Orthanc ID of a multi-frame instance that describes a 3D volume")
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99 ("threads", boost::program_options::value<unsigned int>()->default_value(3),
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100 "Number of download threads")
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101 ("projection", boost::program_options::value<std::string>()->default_value("axial"),
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102 "Projection of interest (can be axial, sagittal or coronal)")
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103 ("reverse", boost::program_options::value<bool>()->default_value(false),
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104 "Reverse the normal direction of the volume")
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105 ;
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106
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107 options.add(generic);
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108 }
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109
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110 virtual void Initialize(IStatusBar& statusBar,
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111 const boost::program_options::variables_map& parameters)
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112 {
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113 using namespace OrthancStone;
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114
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115 if (parameters.count("series") > 1 ||
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116 parameters.count("instance") > 1)
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117 {
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118 LOG(ERROR) << "Only one series or instance is allowed";
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119 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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120 }
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121
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122 if (parameters.count("series") == 1 &&
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123 parameters.count("instance") == 1)
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124 {
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125 LOG(ERROR) << "Cannot specify both a series and an instance";
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126 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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127 }
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128
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129 std::string series;
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130 if (parameters.count("series") == 1)
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131 {
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132 series = parameters["series"].as<std::string>();
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133 }
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134
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135 std::string instance;
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136 if (parameters.count("instance") == 1)
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137 {
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138 instance = parameters["instance"].as<std::string>();
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139 }
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140
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141 if (series.empty() &&
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142 instance.empty())
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143 {
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144 LOG(ERROR) << "The series ID or instance ID is missing";
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145 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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146 }
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147
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148 //unsigned int threads = parameters["threads"].as<unsigned int>();
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149 //bool reverse = parameters["reverse"].as<bool>();
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150
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151 std::string tmp = parameters["projection"].as<std::string>();
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152 Orthanc::Toolbox::ToLowerCase(tmp);
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153
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154 VolumeProjection projection;
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155 if (tmp == "axial")
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156 {
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157 projection = VolumeProjection_Axial;
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158 }
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159 else if (tmp == "sagittal")
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160 {
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161 projection = VolumeProjection_Sagittal;
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162 }
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163 else if (tmp == "coronal")
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164 {
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165 projection = VolumeProjection_Coronal;
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166 }
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167 else
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168 {
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169 LOG(ERROR) << "Unknown projection: " << tmp;
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170 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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171 }
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172
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173 std::unique_ptr<SliceViewerWidget> widget(new SliceViewerWidget);
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174
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175 #if 1
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176 std::unique_ptr<OrthancVolumeImage> volume(new OrthancVolumeImage(context.GetWebService(), true));
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177 if (series.empty())
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178 {
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179 volume->ScheduleLoadInstance(instance);
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180 }
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181 else
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182 {
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183 volume->ScheduleLoadSeries(series);
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184 }
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185
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186 widget->AddLayer(new VolumeImageMPRSlicer(*volume));
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187
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188 context_->AddInteractor(new Interactor(*volume, *widget, projection, 0));
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189 context_->AddSlicedVolume(volume.release());
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190
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191 if (1)
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192 {
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193 RenderStyle s;
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194 //s.drawGrid_ = true;
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195 s.alpha_ = 1;
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196 s.windowing_ = ImageWindowing_Bone;
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197 widget->SetLayerStyle(0, s);
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198 }
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199 else
119
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200 {
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201 RenderStyle s;
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202 s.alpha_ = 1;
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203 s.applyLut_ = true;
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204 s.lut_ = Orthanc::EmbeddedResources::COLORMAP_JET;
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205 s.interpolation_ = ImageInterpolation_Bilinear;
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206 widget->SetLayerStyle(0, s);
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207 }
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208 #else
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209 std::unique_ptr<OrthancVolumeImage> ct(new OrthancVolumeImage(context_->GetWebService(), false));
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210 //ct->ScheduleLoadSeries("15a6f44a-ac7b88fe-19c462d9-dddd918e-b01550d8"); // 0178023P
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211 //ct->ScheduleLoadSeries("dd069910-4f090474-7d2bba07-e5c10783-f9e4fb1d");
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212 //ct->ScheduleLoadSeries("a04ecf01-79b2fc33-58239f7e-ad9db983-28e81afa"); // IBA
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213 //ct->ScheduleLoadSeries("03677739-1d8bca40-db1daf59-d74ff548-7f6fc9c0"); // 0522c0001 TCIA
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214 ct->ScheduleLoadSeries("295e8a13-dfed1320-ba6aebb2-9a13e20f-1b3eb953"); // Captain
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215
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216 std::unique_ptr<OrthancVolumeImage> pet(new OrthancVolumeImage(context_->GetWebService(), true));
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217 //pet->ScheduleLoadSeries("48d2997f-8e25cd81-dd715b64-bd79cdcc-e8fcee53"); // 0178023P
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218 //pet->ScheduleLoadSeries("aabad2e7-80702b5d-e599d26c-4f13398e-38d58a9e");
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219 //pet->ScheduleLoadInstance("830a69ff-8e4b5ee3-b7f966c8-bccc20fb-d322dceb"); // IBA 1
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220 //pet->ScheduleLoadInstance("337876a1-a68a9718-f15abccd-38faafa1-b99b496a"); // IBA 2
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221 //pet->ScheduleLoadInstance("830a69ff-8e4b5ee3-b7f966c8-bccc20fb-d322dceb"); // IBA 3
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222 //pet->ScheduleLoadInstance("269f26f4-0c83eeeb-2e67abbd-5467a40f-f1bec90c"); // 0522c0001 TCIA
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223 pet->ScheduleLoadInstance("f080888c-0ab7528a-f7d9c28c-84980eb1-ff3b0ae6"); // Captain 1
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224 //pet->ScheduleLoadInstance("4f78055b-6499a2c5-1e089290-394acc05-3ec781c1"); // Captain 2
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225
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226 std::unique_ptr<StructureSetLoader> rtStruct(new StructureSetLoader(context_->GetWebService()));
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227 //rtStruct->ScheduleLoadInstance("c2ebc17b-6b3548db-5e5da170-b8ecab71-ea03add3"); // 0178023P
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228 //rtStruct->ScheduleLoadInstance("54460695-ba3885ee-ddf61ac0-f028e31d-a6e474d9"); // IBA
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229 //rtStruct->ScheduleLoadInstance("17cd032b-ad92a438-ca05f06a-f9e96668-7e3e9e20"); // 0522c0001 TCIA
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230 rtStruct->ScheduleLoadInstance("96c889ab-29fe5c54-dda6e66c-3949e4da-58f90d75"); // Captain
123
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231
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232 widget->AddLayer(new VolumeImageMPRSlicer(*ct));
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233 widget->AddLayer(new VolumeImageMPRSlicer(*pet));
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234 widget->AddLayer(new DicomStructureSetSlicer(*rtStruct));
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235
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236 context_->AddInteractor(new Interactor(*pet, *widget, projection, 1));
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237 //context_->AddInteractor(new VolumeImageInteractor(*ct, *widget, projection));
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238
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239 context_->AddSlicedVolume(ct.release());
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240 context_->AddSlicedVolume(pet.release());
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241 context_->AddVolumeLoader(rtStruct.release());
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242
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243 {
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244 RenderStyle s;
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245 //s.drawGrid_ = true;
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246 s.alpha_ = 1;
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247 s.windowing_ = ImageWindowing_Bone;
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248 widget->SetLayerStyle(0, s);
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249 }
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250
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251 {
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252 RenderStyle s;
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253 //s.drawGrid_ = true;
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254 s.SetColor(255, 0, 0); // Draw missing PET layer in red
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255 s.alpha_ = 0.5;
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256 s.applyLut_ = true;
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257 s.lut_ = Orthanc::EmbeddedResources::COLORMAP_JET;
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258 s.interpolation_ = ImageInterpolation_Bilinear;
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259 s.windowing_ = ImageWindowing_Custom;
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260 s.customWindowCenter_ = 0;
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261 s.customWindowWidth_ = 128;
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262 widget->SetLayerStyle(1, s);
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263 }
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264 #endif
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265
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266
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267 statusBar.SetMessage("Use the keys \"b\", \"l\" and \"d\" to change Hounsfield windowing");
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268 statusBar.SetMessage("Use the keys \"t\" to track the (X,Y,Z) mouse coordinates");
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269 statusBar.SetMessage("Use the keys \"m\" to measure distances");
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270 statusBar.SetMessage("Use the keys \"c\" to draw circles");
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271
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272 widget->SetTransmitMouseOver(true);
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273 context_->SetCentralWidget(widget.release());
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274 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 };
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 }