Mercurial > hg > orthanc-stone

annotate OrthancStone/Sources/Loaders/DicomStructureSetLoader.cpp @ 1870:3889ae96d2e9

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added copyright UCLouvain
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 11 Jan 2022 11:04:09 +0100
parents a03260db8835
children 7053b8a0aaec
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2021 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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24 #include "DicomStructureSetLoader.h"
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25
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26 #include "../Scene2D/PolylineSceneLayer.h"
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27 #include "../StoneException.h"
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28 #include "../Toolbox/GeometryToolbox.h"
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30 #include <Toolbox.h>
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31
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32 #if STONE_TIME_BLOCKING_OPS
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33 # include <boost/date_time/posix_time/posix_time.hpp>
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34 #endif
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35
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36 #include <algorithm>
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37
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38 namespace OrthancStone
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39 {
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40
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41 #if 0
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42 void DumpDicomMap(std::ostream& o, const Orthanc::DicomMap& dicomMap)
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43 {
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44 using namespace std;
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45 //ios_base::fmtflags state = o.flags();
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46 //o.flags(ios::right | ios::hex);
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47 //o << "(" << setfill('0') << setw(4) << tag.GetGroup()
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48 // << "," << setw(4) << tag.GetElement() << ")";
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49 //o.flags(state);
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50 Json::Value val;
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51 dicomMap.Serialize(val);
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52 o << val;
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53 //return o;
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54 }
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55 #endif
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56
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57 // implementation of IInstanceLookupHandler that uses Orthanc REST API calls to retrive the
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58 // geometry of referenced instances
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59 class DicomStructureSetLoader::RestInstanceLookupHandler : public DicomStructureSetLoader::IInstanceLookupHandler,
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60 public LoaderStateMachine
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61 {
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62 public:
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63 static boost::shared_ptr<RestInstanceLookupHandler > Create(DicomStructureSetLoader& loader)
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64 {
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65 boost::shared_ptr<RestInstanceLookupHandler> obj(new RestInstanceLookupHandler(loader));
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66 obj->LoaderStateMachine::PostConstructor();
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67 return obj;
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68 }
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69
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70 protected:
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71 explicit RestInstanceLookupHandler(DicomStructureSetLoader& loader) :
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72 LoaderStateMachine(loader.loadersContext_),
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73 loader_(loader)
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74 {
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75 }
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76
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77 virtual void RetrieveReferencedSlices(const std::set<std::string>& nonEmptyInstances) ORTHANC_OVERRIDE;
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78
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79 private:
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80 // these subclasses hold the loading state
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81 class AddReferencedInstance; // 2nd state
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82 class LookupInstance; // 1st state
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83
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84 DicomStructureSetLoader& loader_;
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85 };
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86
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87 class DicomStructureSetLoader::RestInstanceLookupHandler::AddReferencedInstance : public LoaderStateMachine::State
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88 {
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89 private:
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90 std::string instanceId_;
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91
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92 public:
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93 AddReferencedInstance(DicomStructureSetLoader& that,
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94 const std::string& instanceId) :
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95 State(that),
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96 instanceId_(instanceId)
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97 {
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98 }
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99
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100 virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message) ORTHANC_OVERRIDE
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101 {
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102 Json::Value tags;
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103 message.ParseJsonBody(tags);
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104
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105 Orthanc::DicomMap dicom;
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106 dicom.FromDicomAsJson(tags);
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107
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108 DicomStructureSetLoader& loader = GetLoader<DicomStructureSetLoader>();
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109
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110 loader.AddReferencedSlice(dicom);
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111 }
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112 };
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113
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114
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115 // State that converts a "SOP Instance UID" to an Orthanc identifier
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116 class DicomStructureSetLoader::RestInstanceLookupHandler::LookupInstance : public LoaderStateMachine::State
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117 {
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118 private:
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119 std::string sopInstanceUid_;
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120
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121 public:
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122 LookupInstance(DicomStructureSetLoader& that,
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123 const std::string& sopInstanceUid) :
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124 State(that),
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125 sopInstanceUid_(sopInstanceUid)
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126 {
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127 }
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128
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129 virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message) ORTHANC_OVERRIDE
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130 {
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131 DicomStructureSetLoader& loader = GetLoader<DicomStructureSetLoader>();
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132
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133 Json::Value lookup;
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134 message.ParseJsonBody(lookup);
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135
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136 if (lookup.type() != Json::arrayValue ||
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137 lookup.size() != 1 ||
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138 !lookup[0].isMember("Type") ||
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139 !lookup[0].isMember("Path") ||
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140 lookup[0]["Type"].type() != Json::stringValue ||
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141 lookup[0]["ID"].type() != Json::stringValue ||
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142 lookup[0]["Type"].asString() != "Instance")
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143 {
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144 std::stringstream msg;
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145 msg << "Unknown resource! message.GetAnswer() = " << message.GetAnswer() << " message.GetAnswerHeaders() = ";
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146 for (OrthancRestApiCommand::HttpHeaders::const_iterator it = message.GetAnswerHeaders().begin();
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147 it != message.GetAnswerHeaders().end(); ++it)
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148 {
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149 msg << "\nkey: \"" << it->first << "\" value: \"" << it->second << "\"\n";
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150 }
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151 const std::string msgStr = msg.str();
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152 LOG(ERROR) << msgStr;
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153 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadJson);
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154 }
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155
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156 const std::string instanceId = lookup[0]["ID"].asString();
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157
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158 {
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159 std::unique_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
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160 command->SetCallerName("DicomStructureSetLoader::RestInstanceLookupHandler::LookupInstance");
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161 command->SetHttpHeader("Accept-Encoding", "gzip");
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162 std::string uri = "/instances/" + instanceId + "/tags";
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163 command->SetUri(uri);
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164 command->AcquirePayload(new AddReferencedInstance(loader, instanceId));
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165 Schedule(command.release());
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166 }
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167 }
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168 };
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169
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170 void DicomStructureSetLoader::RestInstanceLookupHandler::RetrieveReferencedSlices(
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171 const std::set<std::string>& nonEmptyInstances)
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172 {
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173 for (std::set<std::string>::const_iterator it = nonEmptyInstances.begin();
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174 it != nonEmptyInstances.end();
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175 ++it)
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176 {
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177 std::unique_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
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178 command->SetCallerName("DicomStructureSetLoader::RestInstanceLookupHandler");
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179 command->SetUri("/tools/lookup");
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180 command->SetMethod(Orthanc::HttpMethod_Post);
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181 command->SetBody(*it);
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182 command->AcquirePayload(new LookupInstance(loader_, *it));
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183 Schedule(command.release());
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184 }
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185 }
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186
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187 class DicomStructureSetLoader::LoadStructure : public LoaderStateMachine::State
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188 {
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189 public:
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190 explicit LoadStructure(DicomStructureSetLoader& that) :
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191 State(that)
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192 {
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193 }
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194
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195 virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message) ORTHANC_OVERRIDE
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196 {
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197 #if STONE_TIME_BLOCKING_OPS
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198 boost::posix_time::ptime timerStart = boost::posix_time::microsec_clock::universal_time();
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199 #endif
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200
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201 DicomStructureSetLoader& loader = GetLoader<DicomStructureSetLoader>();
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202
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203 // Set the actual structure set content
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204 {
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205 FullOrthancDataset dicom(message.GetAnswer());
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206
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207 loader.content_.reset(new DicomStructureSet(dicom));
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208 }
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209
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210 // initialize visibility flags
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211 SetDefaultStructureVisibility();
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212
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213 // retrieve the (non-empty) referenced instances (the CT slices containing the corresponding structures)
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214 // Some (admittedly invalid) Dicom files have empty values in the
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215 // 0008,1155 tag. We try our best to cope with this.
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216 // this is why we use `nonEmptyInstances` and not `instances`
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217 std::set<std::string> instances;
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218 std::set<std::string> nonEmptyInstances;
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219
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220 // this traverses the polygon collection for all structures and retrieve the SOPInstanceUID of
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221 // the referenced instances
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222 loader.content_->GetReferencedInstances(instances);
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223
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224 for (std::set<std::string>::const_iterator
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225 it = instances.begin(); it != instances.end(); ++it)
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226 {
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227 std::string instance = Orthanc::Toolbox::StripSpaces(*it);
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228 if(instance != "")
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229 nonEmptyInstances.insert(instance);
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230 }
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231
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232 loader.RetrieveReferencedSlices(nonEmptyInstances);
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233 #if STONE_TIME_BLOCKING_OPS
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234 boost::posix_time::ptime timerEnd = boost::posix_time::microsec_clock::universal_time();
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235 boost::posix_time::time_duration duration = timerEnd - timerStart;
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236 int64_t durationMs = duration.total_milliseconds();
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237 LOG(WARNING) << "DicomStructureSetLoader::LoadStructure::Handle took " << durationMs << " ms";
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238 #endif
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239
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240 }
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241
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242 void SetDefaultStructureVisibility()
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243 {
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244 DicomStructureSetLoader& loader = GetLoader<DicomStructureSetLoader>();
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245
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246 size_t structureCount = loader.content_->GetStructuresCount();
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247
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248 loader.structureVisibility_.resize(structureCount);
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249 bool everythingVisible = false;
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250 if ((loader.initiallyVisibleStructures_.size() == 1)
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251 && (loader.initiallyVisibleStructures_[0].size() == 1)
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252 && (loader.initiallyVisibleStructures_[0][0] == '*'))
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253 {
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254 everythingVisible = true;
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255 }
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256
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257 for (size_t i = 0; i < structureCount; ++i)
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258 {
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259 // if a single "*" string is supplied, this means we want everything
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260 // to be visible...
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261 if (everythingVisible)
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262 {
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263 loader.structureVisibility_.at(i) = true;
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264 }
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265 else
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266 {
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267 // otherwise, we only enable visibility for those structures whose
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268 // names are mentioned in the initiallyVisibleStructures_ array
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269 const std::string& structureName = loader.content_->GetStructureName(i);
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270
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271 std::vector<std::string>::iterator foundIt =
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272 std::find(
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273 loader.initiallyVisibleStructures_.begin(),
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274 loader.initiallyVisibleStructures_.end(),
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275 structureName);
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276 std::vector<std::string>::iterator endIt = loader.initiallyVisibleStructures_.end();
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277 if (foundIt != endIt)
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278 loader.structureVisibility_.at(i) = true;
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279 else
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280 loader.structureVisibility_.at(i) = false;
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281 }
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282 }
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283 }
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284
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285 private:
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286
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287
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288 };
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289
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290
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291 class DicomStructureSetLoader::Slice : public IExtractedSlice
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292 {
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293 private:
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294 const DicomStructureSet& content_;
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295 uint64_t revision_;
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296 bool isValid_;
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297 std::vector<bool> visibility_;
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298
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299 public:
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300 /**
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301 The visibility vector must either:
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302 - be empty
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303 or
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304 - contain the same number of items as the number of structures in the
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305 structure set.
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306 In the first case (empty vector), all the structures are displayed.
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307 In the second case, the visibility of each structure is defined by the
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308 content of the vector at the corresponding index.
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309 */
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310 Slice(const DicomStructureSet& content,
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311 uint64_t revision,
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312 const CoordinateSystem3D& cuttingPlane,
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313 const std::vector<bool>& visibility) :
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314 content_(content),
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315 revision_(revision),
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316 visibility_(visibility)
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317 {
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318 ORTHANC_ASSERT((visibility_.size() == content_.GetStructuresCount())
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319 || (visibility_.size() == 0u));
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320
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321 bool opposite;
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322
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323 const Vector normal = content.GetNormal();
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324 isValid_ = (
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325 GeometryToolbox::IsParallelOrOpposite(opposite, normal, cuttingPlane.GetNormal()) ||
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326 GeometryToolbox::IsParallelOrOpposite(opposite, normal, cuttingPlane.GetAxisX()) ||
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327 GeometryToolbox::IsParallelOrOpposite(opposite, normal, cuttingPlane.GetAxisY()));
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328 }
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329
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330 virtual bool IsValid() ORTHANC_OVERRIDE
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331 {
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332 return isValid_;
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333 }
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334
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335 virtual uint64_t GetRevision() ORTHANC_OVERRIDE
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336 {
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337 return revision_;
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338 }
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339
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340 virtual ISceneLayer* CreateSceneLayer(
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341 const ILayerStyleConfigurator* configurator,
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342 const CoordinateSystem3D& cuttingPlane) ORTHANC_OVERRIDE
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343 {
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344 assert(isValid_);
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345
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346 std::unique_ptr<PolylineSceneLayer> layer(new PolylineSceneLayer);
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347 layer->SetThickness(2);
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348
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349 #if 0
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350 // For testing - This displays a cross at the origin of the 3D
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351 // cutting plane in the 2D viewport
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352 {
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353 PolylineSceneLayer::Chain chain;
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354 chain.push_back(ScenePoint2D(-100, 0));
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355 chain.push_back(ScenePoint2D(100, 0));
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356 layer->AddChain(chain, false, Color(255, 0, 0));
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357 }
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358
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359 {
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360 PolylineSceneLayer::Chain chain;
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361 chain.push_back(ScenePoint2D(0, -100));
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362 chain.push_back(ScenePoint2D(0, 100));
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363 layer->AddChain(chain, false, Color(255, 0, 0));
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364 }
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365 #endif
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366
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367 for (size_t i = 0; i < content_.GetStructuresCount(); i++)
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368 {
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369 if ((visibility_.size() == 0) || visibility_.at(i))
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370 {
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371 const Color& color = content_.GetStructureColor(i);
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372
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373 #if USE_BOOST_UNION_FOR_POLYGONS == 1
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diff changeset
374 std::vector< std::vector<Point2D> > polygons;
1764
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parents: 1758
diff changeset
375
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diff changeset
376 if (content_.ProjectStructure(polygons, i, cuttingPlane))
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parents:
diff changeset
377 {
1019
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diff changeset
378 for (size_t j = 0; j < polygons.size(); j++)
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parents:
diff changeset
379 {
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diff changeset
380 PolylineSceneLayer::Chain chain;
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
381 chain.resize(polygons[j].size());
1764
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
382
1019
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
383 for (size_t k = 0; k < polygons[j].size(); k++)
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
384 {
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
385 chain[k] = ScenePoint2D(polygons[j][k].x, polygons[j][k].y);
1764
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
386 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
387
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diff changeset
388 layer->AddChain(chain, true /* closed */, color);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
389 }
adb59bcb0fc5 fix use of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
390 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
391 #else
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diff changeset
392 std::vector< std::pair<Point2D, Point2D> > segments;
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
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parents: 981
diff changeset
393
1019
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diff changeset
394 if (content_.ProjectStructure(segments, i, cuttingPlane))
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
395 {
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diff changeset
396 for (size_t j = 0; j < segments.size(); j++)
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
397 {
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diff changeset
398 PolylineSceneLayer::Chain chain;
1019
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parents: 1006
diff changeset
399 chain.resize(2);
1000
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Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
400
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diff changeset
401 chain[0] = ScenePoint2D(segments[j].first.x, segments[j].first.y);
52b8b96cb55f cleaning namespaces
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
402 chain[1] = ScenePoint2D(segments[j].second.x, segments[j].second.y);
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
403
1019
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
404 layer->AddChain(chain, false /* NOT closed */, color);
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
405 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
406 }
1019
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
407 #endif
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
408 }
815
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411 return layer.release();
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 };
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415
1310
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
416 DicomStructureSetLoader::DicomStructureSetLoader(
1640
52b8b96cb55f cleaning namespaces
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parents: 1598
diff changeset
417 ILoadersContext& loadersContext)
1310
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
418 : LoaderStateMachine(loadersContext)
9bea7e15b519 - first pass at changes to cope with the refactoring of the loading system
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parents: 1300
diff changeset
419 , loadersContext_(loadersContext)
9bea7e15b519 - first pass at changes to cope with the refactoring of the loading system
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
420 , revision_(0)
9bea7e15b519 - first pass at changes to cope with the refactoring of the loading system
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
421 , countProcessedInstances_(0)
9bea7e15b519 - first pass at changes to cope with the refactoring of the loading system
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
422 , countReferencedInstances_(0)
9bea7e15b519 - first pass at changes to cope with the refactoring of the loading system
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
423 , structuresReady_(false)
815
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424 {
1416
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
425 // the default handler to retrieve slice geometry is RestInstanceLookupHandler
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
426 instanceLookupHandler_ = RestInstanceLookupHandler::Create(*this);
815
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parents:
diff changeset
427 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428
1640
52b8b96cb55f cleaning namespaces
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
429 boost::shared_ptr<DicomStructureSetLoader> DicomStructureSetLoader::Create(ILoadersContext& loadersContext)
1314
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
430 {
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
431 boost::shared_ptr<DicomStructureSetLoader> obj(
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
432 new DicomStructureSetLoader(
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
433 loadersContext));
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
434 obj->LoaderStateMachine::PostConstructor();
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
435 return obj;
1416
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
436 }
1314
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
437
1416
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
438 void DicomStructureSetLoader::AddReferencedSlice(const Orthanc::DicomMap& dicom)
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
439 {
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
440 content_->AddReferencedSlice(dicom);
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
441 countProcessedInstances_ ++;
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
442 assert(countProcessedInstances_ <= countReferencedInstances_);
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
443
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
444 revision_++;
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
445 SetStructuresUpdated();
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
446
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
447 if (countProcessedInstances_ == countReferencedInstances_)
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
448 {
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
449 // All the referenced instances have been loaded, finalize the RT-STRUCT
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
450 content_->CheckReferencedSlices();
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
451 revision_++;
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
452 SetStructuresReady();
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
453 }
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
454 }
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
455
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
456 void DicomStructureSetLoader::RetrieveReferencedSlices(const std::set<std::string>& nonEmptyInstances)
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
457 {
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
458 // we set the number of referenced instances. This allows to know, in the method above, when we're done
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
459 countReferencedInstances_ = static_cast<unsigned int>(nonEmptyInstances.size());
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
460 instanceLookupHandler_->RetrieveReferencedSlices(nonEmptyInstances);
1314
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
461 }
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
462
1019
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
463 void DicomStructureSetLoader::SetStructureDisplayState(size_t structureIndex, bool display)
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
464 {
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
465 structureVisibility_.at(structureIndex) = display;
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
466 revision_++;
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
467 }
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
468
935
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 842
diff changeset
469 DicomStructureSetLoader::~DicomStructureSetLoader()
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 842
diff changeset
470 {
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 842
diff changeset
471 LOG(TRACE) << "DicomStructureSetLoader::~DicomStructureSetLoader()";
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 842
diff changeset
472 }
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 842
diff changeset
473
1019
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
474 void DicomStructureSetLoader::LoadInstance(
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
475 const std::string& instanceId,
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
476 const std::vector<std::string>& initiallyVisibleStructures)
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478 Start();
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 instanceId_ = instanceId;
1019
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
481 initiallyVisibleStructures_ = initiallyVisibleStructures;
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
482
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 {
1640
52b8b96cb55f cleaning namespaces
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
484 std::unique_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
1831
a03260db8835 Added SetCallerName to IOracleCommand to ease debugging
Benjamin Golinvaux <bgo@osimis.io>
parents: 1771
diff changeset
485 command->SetCallerName("DicomStructureSetLoader::LoadInstance");
815
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 command->SetHttpHeader("Accept-Encoding", "gzip");
964
91f827272c1f Added cache-control headers for POST requests + #ifdef'd tracing logs + trace on context restored
Benjamin Golinvaux <bgo@osimis.io>
parents: 954
diff changeset
487
91f827272c1f Added cache-control headers for POST requests + #ifdef'd tracing logs + trace on context restored
Benjamin Golinvaux <bgo@osimis.io>
parents: 954
diff changeset
488 std::string uri = "/instances/" + instanceId + "/tags?ignore-length=3006-0050";
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 977
diff changeset
489
964
91f827272c1f Added cache-control headers for POST requests + #ifdef'd tracing logs + trace on context restored
Benjamin Golinvaux <bgo@osimis.io>
parents: 954
diff changeset
490 command->SetUri(uri);
1128
8e3763d1736a removing CustomOracleCommand
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1059
diff changeset
491 command->AcquirePayload(new LoadStructure(*this));
815
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492 Schedule(command.release());
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495
1385
ffe9beb7c5d3 Added LoadInstanceFullVisibility for default-visible RTSTRUCT
Benjamin Golinvaux <bgo@osimis.io>
parents: 1381
diff changeset
496 void DicomStructureSetLoader::LoadInstanceFullVisibility(const std::string& instanceId)
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497 {
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498 std::vector<std::string> initiallyVisibleStructures;
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499 initiallyVisibleStructures.push_back("*"); // wildcard to make all structure sets visible
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500 LoadInstance(instanceId, initiallyVisibleStructures);
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501 }
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502
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503 IVolumeSlicer::IExtractedSlice* DicomStructureSetLoader::ExtractSlice(const CoordinateSystem3D& cuttingPlane)
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504 {
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505 if (content_.get() == NULL)
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506 {
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507 // Geometry is not available yet
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508 return new IVolumeSlicer::InvalidSlice;
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509 }
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510 else
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511 {
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512 return new Slice(*content_, revision_, cuttingPlane, structureVisibility_);
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513 }
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514 }
937
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515
1342
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516 void DicomStructureSetLoader::SetStructuresUpdated()
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517 {
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518 BroadcastMessage(DicomStructureSetLoader::StructuresUpdated(*this));
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519 }
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520
937
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521 void DicomStructureSetLoader::SetStructuresReady()
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522 {
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523 ORTHANC_ASSERT(!structuresReady_);
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524 structuresReady_ = true;
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525 BroadcastMessage(DicomStructureSetLoader::StructuresReady(*this));
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526 }
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527
86ac61a040c9 Added getters and notifications to allow clients of the loaders (DicomStructureSetLoader, OrthancSeriesVolumeProgressiveLoader and OrthancMultiframeVolumeLoader) to know when the loading is finished + added ability for SDL event loop to execute a callback repeatedly (used to check the view loading state)
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528 bool DicomStructureSetLoader::AreStructuresReady() const
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529 {
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530 return structuresReady_;
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531 }
86ac61a040c9 Added getters and notifications to allow clients of the loaders (DicomStructureSetLoader, OrthancSeriesVolumeProgressiveLoader and OrthancMultiframeVolumeLoader) to know when the loading is finished + added ability for SDL event loop to execute a callback repeatedly (used to check the view loading state)
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532
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533 }