Mercurial > hg > orthanc-stone

annotate OrthancStone/Sources/Loaders/DicomStructureSetLoader.cpp @ 1771:f302bbddf94d

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sync, trying to fix DicomVolumeImageReslicer
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 12 May 2021 15:09:32 +0200
parents adb59bcb0fc5
children a03260db8835
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #include "DicomStructureSetLoader.h"
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24
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25 #include "../Scene2D/PolylineSceneLayer.h"
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26 #include "../StoneException.h"
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27 #include "../Toolbox/GeometryToolbox.h"
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29 #include <Toolbox.h>
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30
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31 #if STONE_TIME_BLOCKING_OPS
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32 # include <boost/date_time/posix_time/posix_time.hpp>
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33 #endif
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34
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35 #include <algorithm>
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36
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37 namespace OrthancStone
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38 {
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39
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40 #if 0
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41 void DumpDicomMap(std::ostream& o, const Orthanc::DicomMap& dicomMap)
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42 {
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43 using namespace std;
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44 //ios_base::fmtflags state = o.flags();
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45 //o.flags(ios::right | ios::hex);
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46 //o << "(" << setfill('0') << setw(4) << tag.GetGroup()
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47 // << "," << setw(4) << tag.GetElement() << ")";
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48 //o.flags(state);
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49 Json::Value val;
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50 dicomMap.Serialize(val);
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51 o << val;
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52 //return o;
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53 }
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54 #endif
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55
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56 // implementation of IInstanceLookupHandler that uses Orthanc REST API calls to retrive the
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57 // geometry of referenced instances
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58 class DicomStructureSetLoader::RestInstanceLookupHandler : public DicomStructureSetLoader::IInstanceLookupHandler,
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59 public LoaderStateMachine
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60 {
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61 public:
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62 static boost::shared_ptr<RestInstanceLookupHandler > Create(DicomStructureSetLoader& loader)
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63 {
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64 boost::shared_ptr<RestInstanceLookupHandler> obj(new RestInstanceLookupHandler(loader));
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65 obj->LoaderStateMachine::PostConstructor();
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66 return obj;
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67 }
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68
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69 protected:
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70 explicit RestInstanceLookupHandler(DicomStructureSetLoader& loader) :
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71 LoaderStateMachine(loader.loadersContext_),
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72 loader_(loader)
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73 {
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74 }
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76 virtual void RetrieveReferencedSlices(const std::set<std::string>& nonEmptyInstances) ORTHANC_OVERRIDE;
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77
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78 private:
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79 // these subclasses hold the loading state
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80 class AddReferencedInstance; // 2nd state
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81 class LookupInstance; // 1st state
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82
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83 DicomStructureSetLoader& loader_;
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84 };
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85
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86 class DicomStructureSetLoader::RestInstanceLookupHandler::AddReferencedInstance : public LoaderStateMachine::State
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87 {
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88 private:
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89 std::string instanceId_;
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90
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91 public:
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92 AddReferencedInstance(DicomStructureSetLoader& that,
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93 const std::string& instanceId) :
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94 State(that),
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95 instanceId_(instanceId)
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96 {
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97 }
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98
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99 virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message) ORTHANC_OVERRIDE
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100 {
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101 Json::Value tags;
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102 message.ParseJsonBody(tags);
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103
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104 Orthanc::DicomMap dicom;
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105 dicom.FromDicomAsJson(tags);
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106
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107 DicomStructureSetLoader& loader = GetLoader<DicomStructureSetLoader>();
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108
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109 loader.AddReferencedSlice(dicom);
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110 }
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111 };
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112
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113
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114 // State that converts a "SOP Instance UID" to an Orthanc identifier
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115 class DicomStructureSetLoader::RestInstanceLookupHandler::LookupInstance : public LoaderStateMachine::State
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116 {
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117 private:
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118 std::string sopInstanceUid_;
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119
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120 public:
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121 LookupInstance(DicomStructureSetLoader& that,
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122 const std::string& sopInstanceUid) :
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123 State(that),
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124 sopInstanceUid_(sopInstanceUid)
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125 {
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126 }
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127
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128 virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message) ORTHANC_OVERRIDE
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129 {
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130 DicomStructureSetLoader& loader = GetLoader<DicomStructureSetLoader>();
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131
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132 Json::Value lookup;
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133 message.ParseJsonBody(lookup);
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134
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135 if (lookup.type() != Json::arrayValue ||
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136 lookup.size() != 1 ||
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137 !lookup[0].isMember("Type") ||
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138 !lookup[0].isMember("Path") ||
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139 lookup[0]["Type"].type() != Json::stringValue ||
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140 lookup[0]["ID"].type() != Json::stringValue ||
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141 lookup[0]["Type"].asString() != "Instance")
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142 {
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143 std::stringstream msg;
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144 msg << "Unknown resource! message.GetAnswer() = " << message.GetAnswer() << " message.GetAnswerHeaders() = ";
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145 for (OrthancRestApiCommand::HttpHeaders::const_iterator it = message.GetAnswerHeaders().begin();
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146 it != message.GetAnswerHeaders().end(); ++it)
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147 {
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148 msg << "\nkey: \"" << it->first << "\" value: \"" << it->second << "\"\n";
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149 }
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150 const std::string msgStr = msg.str();
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151 LOG(ERROR) << msgStr;
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152 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadJson);
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153 }
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154
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155 const std::string instanceId = lookup[0]["ID"].asString();
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156
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157 {
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158 std::unique_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
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159 command->SetHttpHeader("Accept-Encoding", "gzip");
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160 std::string uri = "/instances/" + instanceId + "/tags";
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161 command->SetUri(uri);
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162 command->AcquirePayload(new AddReferencedInstance(loader, instanceId));
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163 Schedule(command.release());
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164 }
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165 }
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166 };
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167
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168 void DicomStructureSetLoader::RestInstanceLookupHandler::RetrieveReferencedSlices(
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169 const std::set<std::string>& nonEmptyInstances)
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170 {
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171 for (std::set<std::string>::const_iterator it = nonEmptyInstances.begin();
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172 it != nonEmptyInstances.end();
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173 ++it)
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174 {
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175 std::unique_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
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176 command->SetUri("/tools/lookup");
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177 command->SetMethod(Orthanc::HttpMethod_Post);
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178 command->SetBody(*it);
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179 command->AcquirePayload(new LookupInstance(loader_, *it));
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180 Schedule(command.release());
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181 }
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182 }
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183
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184 class DicomStructureSetLoader::LoadStructure : public LoaderStateMachine::State
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185 {
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186 public:
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187 explicit LoadStructure(DicomStructureSetLoader& that) :
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188 State(that)
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189 {
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190 }
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191
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192 virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message) ORTHANC_OVERRIDE
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193 {
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194 #if STONE_TIME_BLOCKING_OPS
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195 boost::posix_time::ptime timerStart = boost::posix_time::microsec_clock::universal_time();
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196 #endif
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197
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198 DicomStructureSetLoader& loader = GetLoader<DicomStructureSetLoader>();
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199
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200 // Set the actual structure set content
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201 {
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202 FullOrthancDataset dicom(message.GetAnswer());
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203
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204 loader.content_.reset(new DicomStructureSet(dicom));
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205 }
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206
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207 // initialize visibility flags
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208 SetDefaultStructureVisibility();
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209
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210 // retrieve the (non-empty) referenced instances (the CT slices containing the corresponding structures)
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211 // Some (admittedly invalid) Dicom files have empty values in the
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212 // 0008,1155 tag. We try our best to cope with this.
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213 // this is why we use `nonEmptyInstances` and not `instances`
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214 std::set<std::string> instances;
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215 std::set<std::string> nonEmptyInstances;
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216
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217 // this traverses the polygon collection for all structures and retrieve the SOPInstanceUID of
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218 // the referenced instances
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219 loader.content_->GetReferencedInstances(instances);
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220
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221 for (std::set<std::string>::const_iterator
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222 it = instances.begin(); it != instances.end(); ++it)
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223 {
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224 std::string instance = Orthanc::Toolbox::StripSpaces(*it);
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225 if(instance != "")
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226 nonEmptyInstances.insert(instance);
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227 }
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228
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229 loader.RetrieveReferencedSlices(nonEmptyInstances);
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230 #if STONE_TIME_BLOCKING_OPS
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231 boost::posix_time::ptime timerEnd = boost::posix_time::microsec_clock::universal_time();
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232 boost::posix_time::time_duration duration = timerEnd - timerStart;
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233 int64_t durationMs = duration.total_milliseconds();
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234 LOG(WARNING) << "DicomStructureSetLoader::LoadStructure::Handle took " << durationMs << " ms";
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235 #endif
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236
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237 }
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238
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239 void SetDefaultStructureVisibility()
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240 {
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241 DicomStructureSetLoader& loader = GetLoader<DicomStructureSetLoader>();
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242
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243 size_t structureCount = loader.content_->GetStructuresCount();
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244
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245 loader.structureVisibility_.resize(structureCount);
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246 bool everythingVisible = false;
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247 if ((loader.initiallyVisibleStructures_.size() == 1)
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248 && (loader.initiallyVisibleStructures_[0].size() == 1)
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249 && (loader.initiallyVisibleStructures_[0][0] == '*'))
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250 {
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251 everythingVisible = true;
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252 }
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253
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254 for (size_t i = 0; i < structureCount; ++i)
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255 {
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256 // if a single "*" string is supplied, this means we want everything
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257 // to be visible...
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258 if (everythingVisible)
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259 {
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260 loader.structureVisibility_.at(i) = true;
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261 }
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262 else
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263 {
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264 // otherwise, we only enable visibility for those structures whose
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265 // names are mentioned in the initiallyVisibleStructures_ array
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266 const std::string& structureName = loader.content_->GetStructureName(i);
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267
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268 std::vector<std::string>::iterator foundIt =
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269 std::find(
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270 loader.initiallyVisibleStructures_.begin(),
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271 loader.initiallyVisibleStructures_.end(),
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272 structureName);
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273 std::vector<std::string>::iterator endIt = loader.initiallyVisibleStructures_.end();
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274 if (foundIt != endIt)
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275 loader.structureVisibility_.at(i) = true;
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276 else
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277 loader.structureVisibility_.at(i) = false;
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278 }
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279 }
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280 }
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281
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282 private:
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283
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284
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285 };
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286
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287
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288 class DicomStructureSetLoader::Slice : public IExtractedSlice
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289 {
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290 private:
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291 const DicomStructureSet& content_;
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292 uint64_t revision_;
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293 bool isValid_;
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294 std::vector<bool> visibility_;
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295
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296 public:
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297 /**
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298 The visibility vector must either:
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299 - be empty
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300 or
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301 - contain the same number of items as the number of structures in the
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302 structure set.
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303 In the first case (empty vector), all the structures are displayed.
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304 In the second case, the visibility of each structure is defined by the
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305 content of the vector at the corresponding index.
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306 */
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307 Slice(const DicomStructureSet& content,
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308 uint64_t revision,
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309 const CoordinateSystem3D& cuttingPlane,
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310 const std::vector<bool>& visibility) :
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311 content_(content),
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312 revision_(revision),
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313 visibility_(visibility)
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314 {
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315 ORTHANC_ASSERT((visibility_.size() == content_.GetStructuresCount())
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316 || (visibility_.size() == 0u));
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317
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318 bool opposite;
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319
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320 const Vector normal = content.GetNormal();
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321 isValid_ = (
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322 GeometryToolbox::IsParallelOrOpposite(opposite, normal, cuttingPlane.GetNormal()) ||
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323 GeometryToolbox::IsParallelOrOpposite(opposite, normal, cuttingPlane.GetAxisX()) ||
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324 GeometryToolbox::IsParallelOrOpposite(opposite, normal, cuttingPlane.GetAxisY()));
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325 }
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326
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327 virtual bool IsValid() ORTHANC_OVERRIDE
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328 {
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329 return isValid_;
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330 }
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331
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332 virtual uint64_t GetRevision() ORTHANC_OVERRIDE
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333 {
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334 return revision_;
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335 }
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336
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337 virtual ISceneLayer* CreateSceneLayer(
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338 const ILayerStyleConfigurator* configurator,
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339 const CoordinateSystem3D& cuttingPlane) ORTHANC_OVERRIDE
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340 {
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341 assert(isValid_);
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342
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343 std::unique_ptr<PolylineSceneLayer> layer(new PolylineSceneLayer);
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344 layer->SetThickness(2);
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345
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346 #if 0
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347 // For testing - This displays a cross at the origin of the 3D
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348 // cutting plane in the 2D viewport
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349 {
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350 PolylineSceneLayer::Chain chain;
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351 chain.push_back(ScenePoint2D(-100, 0));
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352 chain.push_back(ScenePoint2D(100, 0));
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353 layer->AddChain(chain, false, Color(255, 0, 0));
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354 }
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355
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356 {
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357 PolylineSceneLayer::Chain chain;
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358 chain.push_back(ScenePoint2D(0, -100));
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359 chain.push_back(ScenePoint2D(0, 100));
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360 layer->AddChain(chain, false, Color(255, 0, 0));
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361 }
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362 #endif
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363
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364 for (size_t i = 0; i < content_.GetStructuresCount(); i++)
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365 {
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366 if ((visibility_.size() == 0) || visibility_.at(i))
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367 {
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368 const Color& color = content_.GetStructureColor(i);
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369
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370 #if USE_BOOST_UNION_FOR_POLYGONS == 1
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371 std::vector< std::vector<Point2D> > polygons;
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372
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373 if (content_.ProjectStructure(polygons, i, cuttingPlane))
815
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 {
1019
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parents: 1006
diff changeset
375 for (size_t j = 0; j < polygons.size(); j++)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 {
1019
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
377 PolylineSceneLayer::Chain chain;
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
378 chain.resize(polygons[j].size());
1764
adb59bcb0fc5 fix use of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
379
1019
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parents: 1006
diff changeset
380 for (size_t k = 0; k < polygons[j].size(); k++)
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
381 {
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
382 chain[k] = ScenePoint2D(polygons[j][k].x, polygons[j][k].y);
1764
adb59bcb0fc5 fix use of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
383 }
adb59bcb0fc5 fix use of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
384
1019
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
385 layer->AddChain(chain, true /* closed */, color);
1764
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
386 }
adb59bcb0fc5 fix use of USE_BOOST_UNION_FOR_POLYGONS
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
387 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
388 #else
1640
52b8b96cb55f cleaning namespaces
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
389 std::vector< std::pair<Point2D, Point2D> > segments;
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
390
1019
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
391 if (content_.ProjectStructure(segments, i, cuttingPlane))
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
392 {
1019
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parents: 1006
diff changeset
393 for (size_t j = 0; j < segments.size(); j++)
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
394 {
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parents: 1598
diff changeset
395 PolylineSceneLayer::Chain chain;
1019
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parents: 1006
diff changeset
396 chain.resize(2);
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
397
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parents: 1598
diff changeset
398 chain[0] = ScenePoint2D(segments[j].first.x, segments[j].first.y);
52b8b96cb55f cleaning namespaces
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
399 chain[1] = ScenePoint2D(segments[j].second.x, segments[j].second.y);
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
400
1019
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Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
401 layer->AddChain(chain, false /* NOT closed */, color);
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
402 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
403 }
1019
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
404 #endif
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
405 }
815
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408 return layer.release();
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410 };
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412
1310
9bea7e15b519 - first pass at changes to cope with the refactoring of the loading system
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
413 DicomStructureSetLoader::DicomStructureSetLoader(
1640
52b8b96cb55f cleaning namespaces
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parents: 1598
diff changeset
414 ILoadersContext& loadersContext)
1310
9bea7e15b519 - first pass at changes to cope with the refactoring of the loading system
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
415 : LoaderStateMachine(loadersContext)
9bea7e15b519 - first pass at changes to cope with the refactoring of the loading system
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
416 , loadersContext_(loadersContext)
9bea7e15b519 - first pass at changes to cope with the refactoring of the loading system
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
417 , revision_(0)
9bea7e15b519 - first pass at changes to cope with the refactoring of the loading system
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
418 , countProcessedInstances_(0)
9bea7e15b519 - first pass at changes to cope with the refactoring of the loading system
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
419 , countReferencedInstances_(0)
9bea7e15b519 - first pass at changes to cope with the refactoring of the loading system
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
420 , structuresReady_(false)
815
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421 {
1416
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
422 // the default handler to retrieve slice geometry is RestInstanceLookupHandler
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
423 instanceLookupHandler_ = RestInstanceLookupHandler::Create(*this);
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425
1640
52b8b96cb55f cleaning namespaces
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
426 boost::shared_ptr<DicomStructureSetLoader> DicomStructureSetLoader::Create(ILoadersContext& loadersContext)
1314
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
427 {
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
428 boost::shared_ptr<DicomStructureSetLoader> obj(
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
429 new DicomStructureSetLoader(
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
430 loadersContext));
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
431 obj->LoaderStateMachine::PostConstructor();
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
432 return obj;
1416
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
433 }
1314
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
434
1416
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
435 void DicomStructureSetLoader::AddReferencedSlice(const Orthanc::DicomMap& dicom)
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
436 {
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
437 content_->AddReferencedSlice(dicom);
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
438 countProcessedInstances_ ++;
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
439 assert(countProcessedInstances_ <= countReferencedInstances_);
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
440
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
441 revision_++;
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
442 SetStructuresUpdated();
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
443
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
444 if (countProcessedInstances_ == countReferencedInstances_)
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
445 {
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
446 // All the referenced instances have been loaded, finalize the RT-STRUCT
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
447 content_->CheckReferencedSlices();
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
448 revision_++;
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
449 SetStructuresReady();
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
450 }
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
451 }
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
452
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
453 void DicomStructureSetLoader::RetrieveReferencedSlices(const std::set<std::string>& nonEmptyInstances)
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
454 {
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
455 // we set the number of referenced instances. This allows to know, in the method above, when we're done
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
456 countReferencedInstances_ = static_cast<unsigned int>(nonEmptyInstances.size());
d959bc8f6c1b Instance lookup is now performed in a separate class through an interface. Another implementation can be injected (SetInstanceLookupHandler)
Benjamin Golinvaux <bgo@osimis.io>
parents: 1385
diff changeset
457 instanceLookupHandler_->RetrieveReferencedSlices(nonEmptyInstances);
1314
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
458 }
9b126de2cde2 Since the observer system now uses shared_ptr and many registrations are
Benjamin Golinvaux <bgo@osimis.io>
parents: 1310
diff changeset
459
1019
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
460 void DicomStructureSetLoader::SetStructureDisplayState(size_t structureIndex, bool display)
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
461 {
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
462 structureVisibility_.at(structureIndex) = display;
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
463 revision_++;
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
464 }
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
465
935
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 842
diff changeset
466 DicomStructureSetLoader::~DicomStructureSetLoader()
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 842
diff changeset
467 {
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 842
diff changeset
468 LOG(TRACE) << "DicomStructureSetLoader::~DicomStructureSetLoader()";
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 842
diff changeset
469 }
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 842
diff changeset
470
1019
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
471 void DicomStructureSetLoader::LoadInstance(
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
472 const std::string& instanceId,
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
473 const std::vector<std::string>& initiallyVisibleStructures)
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475 Start();
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 instanceId_ = instanceId;
1019
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
478 initiallyVisibleStructures_ = initiallyVisibleStructures;
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
479
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 {
1640
52b8b96cb55f cleaning namespaces
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
481 std::unique_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482 command->SetHttpHeader("Accept-Encoding", "gzip");
964
91f827272c1f Added cache-control headers for POST requests + #ifdef'd tracing logs + trace on context restored
Benjamin Golinvaux <bgo@osimis.io>
parents: 954
diff changeset
483
91f827272c1f Added cache-control headers for POST requests + #ifdef'd tracing logs + trace on context restored
Benjamin Golinvaux <bgo@osimis.io>
parents: 954
diff changeset
484 std::string uri = "/instances/" + instanceId + "/tags?ignore-length=3006-0050";
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 977
diff changeset
485
964
91f827272c1f Added cache-control headers for POST requests + #ifdef'd tracing logs + trace on context restored
Benjamin Golinvaux <bgo@osimis.io>
parents: 954
diff changeset
486 command->SetUri(uri);
1128
8e3763d1736a removing CustomOracleCommand
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1059
diff changeset
487 command->AcquirePayload(new LoadStructure(*this));
815
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488 Schedule(command.release());
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491
1385
ffe9beb7c5d3 Added LoadInstanceFullVisibility for default-visible RTSTRUCT
Benjamin Golinvaux <bgo@osimis.io>
parents: 1381
diff changeset
492 void DicomStructureSetLoader::LoadInstanceFullVisibility(const std::string& instanceId)
ffe9beb7c5d3 Added LoadInstanceFullVisibility for default-visible RTSTRUCT
Benjamin Golinvaux <bgo@osimis.io>
parents: 1381
diff changeset
493 {
ffe9beb7c5d3 Added LoadInstanceFullVisibility for default-visible RTSTRUCT
Benjamin Golinvaux <bgo@osimis.io>
parents: 1381
diff changeset
494 std::vector<std::string> initiallyVisibleStructures;
ffe9beb7c5d3 Added LoadInstanceFullVisibility for default-visible RTSTRUCT
Benjamin Golinvaux <bgo@osimis.io>
parents: 1381
diff changeset
495 initiallyVisibleStructures.push_back("*"); // wildcard to make all structure sets visible
ffe9beb7c5d3 Added LoadInstanceFullVisibility for default-visible RTSTRUCT
Benjamin Golinvaux <bgo@osimis.io>
parents: 1381
diff changeset
496 LoadInstance(instanceId, initiallyVisibleStructures);
ffe9beb7c5d3 Added LoadInstanceFullVisibility for default-visible RTSTRUCT
Benjamin Golinvaux <bgo@osimis.io>
parents: 1381
diff changeset
497 }
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498
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499 IVolumeSlicer::IExtractedSlice* DicomStructureSetLoader::ExtractSlice(const CoordinateSystem3D& cuttingPlane)
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500 {
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501 if (content_.get() == NULL)
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502 {
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503 // Geometry is not available yet
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504 return new IVolumeSlicer::InvalidSlice;
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505 }
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506 else
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507 {
1019
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508 return new Slice(*content_, revision_, cuttingPlane, structureVisibility_);
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509 }
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510 }
937
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511
1342
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512 void DicomStructureSetLoader::SetStructuresUpdated()
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513 {
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514 BroadcastMessage(DicomStructureSetLoader::StructuresUpdated(*this));
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515 }
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516
937
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517 void DicomStructureSetLoader::SetStructuresReady()
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518 {
86ac61a040c9 Added getters and notifications to allow clients of the loaders (DicomStructureSetLoader, OrthancSeriesVolumeProgressiveLoader and OrthancMultiframeVolumeLoader) to know when the loading is finished + added ability for SDL event loop to execute a callback repeatedly (used to check the view loading state)
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519 ORTHANC_ASSERT(!structuresReady_);
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520 structuresReady_ = true;
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521 BroadcastMessage(DicomStructureSetLoader::StructuresReady(*this));
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522 }
86ac61a040c9 Added getters and notifications to allow clients of the loaders (DicomStructureSetLoader, OrthancSeriesVolumeProgressiveLoader and OrthancMultiframeVolumeLoader) to know when the loading is finished + added ability for SDL event loop to execute a callback repeatedly (used to check the view loading state)
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parents: 935
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523
86ac61a040c9 Added getters and notifications to allow clients of the loaders (DicomStructureSetLoader, OrthancSeriesVolumeProgressiveLoader and OrthancMultiframeVolumeLoader) to know when the loading is finished + added ability for SDL event loop to execute a callback repeatedly (used to check the view loading state)
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524 bool DicomStructureSetLoader::AreStructuresReady() const
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525 {
86ac61a040c9 Added getters and notifications to allow clients of the loaders (DicomStructureSetLoader, OrthancSeriesVolumeProgressiveLoader and OrthancMultiframeVolumeLoader) to know when the loading is finished + added ability for SDL event loop to execute a callback repeatedly (used to check the view loading state)
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526 return structuresReady_;
86ac61a040c9 Added getters and notifications to allow clients of the loaders (DicomStructureSetLoader, OrthancSeriesVolumeProgressiveLoader and OrthancMultiframeVolumeLoader) to know when the loading is finished + added ability for SDL event loop to execute a callback repeatedly (used to check the view loading state)
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527 }
86ac61a040c9 Added getters and notifications to allow clients of the loaders (DicomStructureSetLoader, OrthancSeriesVolumeProgressiveLoader and OrthancMultiframeVolumeLoader) to know when the loading is finished + added ability for SDL event loop to execute a callback repeatedly (used to check the view loading state)
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528
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529 }