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annotate Applications/Samples/SingleVolumeApplication.h @ 1322:0da659f8579c broker

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Object reference 1st commit + indent change
author Benjamin Golinvaux <bgo@osimis.io>
date Mon, 23 Mar 2020 13:52:27 +0100
parents 8a0a62189f46
children
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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21
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22 #pragma once
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23
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24 #include "SampleApplicationBase.h"
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25 #include "../../Framework/dev.h"
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26 #include "../../Framework/Layers/LineMeasureTracker.h"
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27 #include "../../Framework/Layers/CircleMeasureTracker.h"
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29 #include <Core/Toolbox.h>
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30 #include <Core/Logging.h>
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32 #include <Plugins/Samples/Common/OrthancHttpConnection.h> // TODO REMOVE
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33 #include "../../Framework/Layers/DicomStructureSetSlicer.h" // TODO REMOVE
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34 #include "../../Framework/Toolbox/MessagingToolbox.h" // TODO REMOVE
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36 namespace OrthancStone
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37 {
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38 namespace Samples
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39 {
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40 class SingleVolumeApplication : public SampleApplicationBase
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41 {
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42 private:
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43 class Interactor : public VolumeImageInteractor
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44 {
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45 private:
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46 SliceViewerWidget& widget_;
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47 size_t layer_;
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48
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49 protected:
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50 virtual void NotifySliceContentChange(const ISlicedVolume& volume,
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51 const size_t& sliceIndex,
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52 const Slice& slice)
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53 {
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54 const OrthancVolumeImage& image = dynamic_cast<const OrthancVolumeImage&>(volume);
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56 RenderStyle s = widget_.GetLayerStyle(layer_);
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58 if (image.FitWindowingToRange(s, slice.GetConverter()))
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59 {
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60 //printf("Windowing: %f => %f\n", s.customWindowCenter_, s.customWindowWidth_);
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61 widget_.SetLayerStyle(layer_, s);
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62 }
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63 }
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64
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65 virtual void MouseOver(CairoContext& context,
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66 WorldSceneWidget& widget,
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67 const ViewportGeometry& view,
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68 double x,
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69 double y,
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70 IStatusBar* statusBar)
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71 {
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72 const SliceViewerWidget& w = dynamic_cast<const SliceViewerWidget&>(widget);
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73 Vector p = w.GetSlice().MapSliceToWorldCoordinates(x, y);
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74 printf("%f %f %f\n", p[0], p[1], p[2]);
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75 }
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77 public:
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78 Interactor(OrthancVolumeImage& volume,
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79 SliceViewerWidget& widget,
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80 VolumeProjection projection,
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81 size_t layer) :
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82 VolumeImageInteractor(volume, widget, projection),
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83 widget_(widget),
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84 layer_(layer)
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85 {
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86 }
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87 };
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90 public:
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91 virtual void DeclareStartupOptions(boost::program_options::options_description& options)
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92 {
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93 boost::program_options::options_description generic("Sample options");
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94 generic.add_options()
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95 ("series", boost::program_options::value<std::string>(),
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96 "Orthanc ID of the series")
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97 ("instance", boost::program_options::value<std::string>(),
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98 "Orthanc ID of a multi-frame instance that describes a 3D volume")
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99 ("threads", boost::program_options::value<unsigned int>()->default_value(3),
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100 "Number of download threads")
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101 ("projection", boost::program_options::value<std::string>()->default_value("axial"),
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102 "Projection of interest (can be axial, sagittal or coronal)")
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103 ("reverse", boost::program_options::value<bool>()->default_value(false),
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104 "Reverse the normal direction of the volume")
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105 ;
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106
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107 options.add(generic);
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108 }
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109
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110 virtual void Initialize(IStatusBar& statusBar,
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111 const boost::program_options::variables_map& parameters)
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112 {
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113 using namespace OrthancStone;
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114
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115 if (parameters.count("series") > 1 ||
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116 parameters.count("instance") > 1)
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117 {
117
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118 LOG(ERROR) << "Only one series or instance is allowed";
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119 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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120 }
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121
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122 if (parameters.count("series") == 1 &&
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123 parameters.count("instance") == 1)
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124 {
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125 LOG(ERROR) << "Cannot specify both a series and an instance";
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126 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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127 }
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128
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129 std::string series;
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130 if (parameters.count("series") == 1)
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131 {
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132 series = parameters["series"].as<std::string>();
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133 }
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134
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135 std::string instance;
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136 if (parameters.count("instance") == 1)
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137 {
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138 instance = parameters["instance"].as<std::string>();
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139 }
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140
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141 if (series.empty() &&
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142 instance.empty())
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143 {
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144 LOG(ERROR) << "The series ID or instance ID is missing";
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145 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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146 }
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147
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148 //unsigned int threads = parameters["threads"].as<unsigned int>();
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149 //bool reverse = parameters["reverse"].as<bool>();
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150
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151 std::string tmp = parameters["projection"].as<std::string>();
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152 Orthanc::Toolbox::ToLowerCase(tmp);
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153
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154 VolumeProjection projection;
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155 if (tmp == "axial")
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156 {
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157 projection = VolumeProjection_Axial;
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158 }
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159 else if (tmp == "sagittal")
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160 {
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161 projection = VolumeProjection_Sagittal;
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162 }
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163 else if (tmp == "coronal")
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164 {
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165 projection = VolumeProjection_Coronal;
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166 }
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167 else
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168 {
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169 LOG(ERROR) << "Unknown projection: " << tmp;
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170 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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171 }
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172
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173 std::unique_ptr<SliceViewerWidget> widget(new SliceViewerWidget);
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174
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175 #if 1
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176 std::unique_ptr<OrthancVolumeImage> volume(new OrthancVolumeImage(context.GetWebService(), true));
117
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177 if (series.empty())
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178 {
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179 volume->ScheduleLoadInstance(instance);
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180 }
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181 else
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182 {
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183 volume->ScheduleLoadSeries(series);
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184 }
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185
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186 widget->AddLayer(new VolumeImageMPRSlicer(*volume));
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187
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188 context_->AddInteractor(new Interactor(*volume, *widget, projection, 0));
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189 context_->AddSlicedVolume(volume.release());
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190
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191 if (1)
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192 {
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193 RenderStyle s;
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194 //s.drawGrid_ = true;
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195 s.alpha_ = 1;
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196 s.windowing_ = ImageWindowing_Bone;
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197 widget->SetLayerStyle(0, s);
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198 }
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199 else
119
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200 {
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201 RenderStyle s;
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202 s.alpha_ = 1;
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203 s.applyLut_ = true;
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204 s.lut_ = Orthanc::EmbeddedResources::COLORMAP_JET;
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205 s.interpolation_ = ImageInterpolation_Bilinear;
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206 widget->SetLayerStyle(0, s);
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207 }
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208 #else
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209 std::unique_ptr<OrthancVolumeImage> ct(new OrthancVolumeImage(context_->GetWebService(), false));
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210 //ct->ScheduleLoadSeries("15a6f44a-ac7b88fe-19c462d9-dddd918e-b01550d8"); // 0178023P
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211 //ct->ScheduleLoadSeries("dd069910-4f090474-7d2bba07-e5c10783-f9e4fb1d");
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212 //ct->ScheduleLoadSeries("a04ecf01-79b2fc33-58239f7e-ad9db983-28e81afa"); // IBA
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213 //ct->ScheduleLoadSeries("03677739-1d8bca40-db1daf59-d74ff548-7f6fc9c0"); // 0522c0001 TCIA
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214 ct->ScheduleLoadSeries("295e8a13-dfed1320-ba6aebb2-9a13e20f-1b3eb953"); // Captain
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215
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216 std::unique_ptr<OrthancVolumeImage> pet(new OrthancVolumeImage(context_->GetWebService(), true));
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217 //pet->ScheduleLoadSeries("48d2997f-8e25cd81-dd715b64-bd79cdcc-e8fcee53"); // 0178023P
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218 //pet->ScheduleLoadSeries("aabad2e7-80702b5d-e599d26c-4f13398e-38d58a9e");
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219 //pet->ScheduleLoadInstance("830a69ff-8e4b5ee3-b7f966c8-bccc20fb-d322dceb"); // IBA 1
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220 //pet->ScheduleLoadInstance("337876a1-a68a9718-f15abccd-38faafa1-b99b496a"); // IBA 2
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221 //pet->ScheduleLoadInstance("830a69ff-8e4b5ee3-b7f966c8-bccc20fb-d322dceb"); // IBA 3
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222 //pet->ScheduleLoadInstance("269f26f4-0c83eeeb-2e67abbd-5467a40f-f1bec90c"); // 0522c0001 TCIA
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223 pet->ScheduleLoadInstance("f080888c-0ab7528a-f7d9c28c-84980eb1-ff3b0ae6"); // Captain 1
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224 //pet->ScheduleLoadInstance("4f78055b-6499a2c5-1e089290-394acc05-3ec781c1"); // Captain 2
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225
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226 std::unique_ptr<StructureSetLoader> rtStruct(new StructureSetLoader(context_->GetWebService()));
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227 //rtStruct->ScheduleLoadInstance("c2ebc17b-6b3548db-5e5da170-b8ecab71-ea03add3"); // 0178023P
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228 //rtStruct->ScheduleLoadInstance("54460695-ba3885ee-ddf61ac0-f028e31d-a6e474d9"); // IBA
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229 //rtStruct->ScheduleLoadInstance("17cd032b-ad92a438-ca05f06a-f9e96668-7e3e9e20"); // 0522c0001 TCIA
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230 rtStruct->ScheduleLoadInstance("96c889ab-29fe5c54-dda6e66c-3949e4da-58f90d75"); // Captain
123
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231
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232 widget->AddLayer(new VolumeImageMPRSlicer(*ct));
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233 widget->AddLayer(new VolumeImageMPRSlicer(*pet));
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234 widget->AddLayer(new DicomStructureSetSlicer(*rtStruct));
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235
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236 context_->AddInteractor(new Interactor(*pet, *widget, projection, 1));
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237 //context_->AddInteractor(new VolumeImageInteractor(*ct, *widget, projection));
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238
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239 context_->AddSlicedVolume(ct.release());
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240 context_->AddSlicedVolume(pet.release());
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241 context_->AddVolumeLoader(rtStruct.release());
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242
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243 {
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244 RenderStyle s;
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245 //s.drawGrid_ = true;
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246 s.alpha_ = 1;
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247 s.windowing_ = ImageWindowing_Bone;
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248 widget->SetLayerStyle(0, s);
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249 }
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250
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251 {
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252 RenderStyle s;
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253 //s.drawGrid_ = true;
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254 s.SetColor(255, 0, 0); // Draw missing PET layer in red
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255 s.alpha_ = 0.5;
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256 s.applyLut_ = true;
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257 s.lut_ = Orthanc::EmbeddedResources::COLORMAP_JET;
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258 s.interpolation_ = ImageInterpolation_Bilinear;
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259 s.windowing_ = ImageWindowing_Custom;
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260 s.customWindowCenter_ = 0;
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261 s.customWindowWidth_ = 128;
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262 widget->SetLayerStyle(1, s);
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263 }
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264 #endif
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265
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266
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267 statusBar.SetMessage("Use the keys \"b\", \"l\" and \"d\" to change Hounsfield windowing");
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268 statusBar.SetMessage("Use the keys \"t\" to track the (X,Y,Z) mouse coordinates");
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269 statusBar.SetMessage("Use the keys \"m\" to measure distances");
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270 statusBar.SetMessage("Use the keys \"c\" to draw circles");
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271
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272 widget->SetTransmitMouseOver(true);
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273 context_->SetCentralWidget(widget.release());
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274 }
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275 };
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 }