Mercurial > hg > orthanc-stl

annotate Sources/Plugin.cpp @ 40:8a1daa321afe

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 05 Apr 2024 17:50:06 +0200
parents 970994058acd
children 967f947014ac 5117515503bf
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1 /**
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2 * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
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3 * SPDX-License-Identifier: GPL-3.0-or-later
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4 */
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5
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6 /**
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7 * STL plugin for Orthanc
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8 * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
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9 *
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10 * This program is free software: you can redistribute it and/or
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11 * modify it under the terms of the GNU General Public License as
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12 * published by the Free Software Foundation, either version 3 of the
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13 * License, or (at your option) any later version.
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14 *
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15 * This program is distributed in the hope that it will be useful, but
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16 * WITHOUT ANY WARRANTY; without even the implied warranty of
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17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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18 * General Public License for more details.
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19 *
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20 * You should have received a copy of the GNU General Public License
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21 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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22 **/
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25 #include "StructureSetGeometry.h"
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26 #include "STLToolbox.h"
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27 #include "VTKToolbox.h"
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29 #include <EmbeddedResources.h>
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31 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
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33 #include <DicomParsing/FromDcmtkBridge.h>
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34 #include <Images/ImageProcessing.h>
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35 #include <Logging.h>
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36 #include <SerializationToolbox.h>
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37 #include <SystemToolbox.h>
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39 #include <vtkNew.h>
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41 #include <boost/algorithm/string.hpp>
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42 #include <boost/thread/shared_mutex.hpp>
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43
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44 #define ORTHANC_PLUGIN_NAME "stl"
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45
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46
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47 // Forward declaration
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48 void ReadStaticAsset(std::string& target,
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49 const std::string& path);
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52 /**
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53 * As the static assets are gzipped by the "EmbedStaticAssets.py"
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54 * script, we use a cache to maintain the uncompressed assets in order
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55 * to avoid multiple gzip decodings.
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56 **/
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57 class ResourcesCache : public boost::noncopyable
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58 {
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59 private:
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60 typedef std::map<std::string, std::string*> Content;
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61
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62 boost::shared_mutex mutex_;
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63 Content content_;
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64
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65 public:
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66 ~ResourcesCache()
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67 {
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68 for (Content::iterator it = content_.begin(); it != content_.end(); ++it)
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69 {
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70 assert(it->second != NULL);
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71 delete it->second;
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72 }
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73 }
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75 void Answer(OrthancPluginRestOutput* output,
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76 const std::string& path)
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77 {
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78 const std::string mime = Orthanc::EnumerationToString(Orthanc::SystemToolbox::AutodetectMimeType(path));
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79
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80 {
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81 // Check whether the cache already contains the resource
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82 boost::shared_lock<boost::shared_mutex> lock(mutex_);
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83
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84 Content::const_iterator found = content_.find(path);
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85
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86 if (found != content_.end())
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87 {
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88 assert(found->second != NULL);
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89 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, found->second->c_str(), found->second->size(), mime.c_str());
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90 return;
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91 }
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92 }
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93
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94 // This resource has not been cached yet
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95
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96 std::unique_ptr<std::string> item(new std::string);
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97 ReadStaticAsset(*item, path);
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98 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, item->c_str(), item->size(), mime.c_str());
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99
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100 {
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101 // Store the resource into the cache
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102 boost::unique_lock<boost::shared_mutex> lock(mutex_);
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103
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104 if (content_.find(path) == content_.end())
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105 {
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106 content_[path] = item.release();
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107 }
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108 }
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109 }
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110 };
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111
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112
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113 static ResourcesCache cache_;
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114 static bool hasCreateDicomStl_;
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115
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116 void ServeFile(OrthancPluginRestOutput* output,
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117 const char* url,
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118 const OrthancPluginHttpRequest* request)
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119 {
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120 if (request->method != OrthancPluginHttpMethod_Get)
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121 {
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122 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
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123 return;
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124 }
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125
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126 std::string file = request->groups[0];
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127
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128 if (boost::starts_with(file, "libs/"))
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129 {
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130 cache_.Answer(output, file.substr(5));
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131 }
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132 else
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133 {
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134 Orthanc::EmbeddedResources::FileResourceId resourceId;
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135 Orthanc::MimeType mimeType;
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136
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137 if (file == "three.html")
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138 {
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139 resourceId = Orthanc::EmbeddedResources::THREE_HTML;
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140 mimeType = Orthanc::MimeType_Html;
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141 }
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142 else if (file == "three.js")
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143 {
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144 resourceId = Orthanc::EmbeddedResources::THREE_JS;
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145 mimeType = Orthanc::MimeType_JavaScript;
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146 }
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147 else if (file == "o3dv.html")
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148 {
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149 resourceId = Orthanc::EmbeddedResources::O3DV_HTML;
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150 mimeType = Orthanc::MimeType_Html;
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151 }
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152 else if (file == "o3dv.js")
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153 {
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154 resourceId = Orthanc::EmbeddedResources::O3DV_JS;
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155 mimeType = Orthanc::MimeType_JavaScript;
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156 }
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diff changeset
157 else
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158 {
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159 OrthancPluginSendHttpStatusCode(OrthancPlugins::GetGlobalContext(), output, 404);
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160 return;
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161 }
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diff changeset
162
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163 std::string s;
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164 Orthanc::EmbeddedResources::GetFileResource(s, resourceId);
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165 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(mimeType));
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166 }
0
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167 }
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168
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169
1
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170
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171
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172 #include <dcmtk/dcmdata/dcfilefo.h>
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173 #include <dcmtk/dcmdata/dcsequen.h>
29
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174 #include <dcmtk/dcmdata/dcuid.h>
1
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175
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176
40
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177 namespace
1
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178 {
40
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179 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller
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180 {
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181 private:
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182 Orthanc::ImageAccessor& target_;
1
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183
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184 public:
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185 explicit XorFiller(Orthanc::ImageAccessor& target) :
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186 target_(target)
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187 {
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188 }
1
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diff changeset
189
40
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190 virtual void Fill(int y,
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191 int x1,
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diff changeset
192 int x2) ORTHANC_OVERRIDE
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
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diff changeset
193 {
40
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194 assert(x1 <= x2);
1
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diff changeset
195
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196 if (y >= 0 &&
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197 y < static_cast<int>(target_.GetHeight()))
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198 {
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199 x1 = std::max(x1, 0);
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200 x2 = std::min(x2, static_cast<int>(target_.GetWidth()) - 1);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
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diff changeset
201
40
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diff changeset
202 uint8_t* p = reinterpret_cast<uint8_t*>(target_.GetRow(y)) + x1;
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diff changeset
203
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diff changeset
204 for (int i = x1; i <= x2; i++, p++)
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diff changeset
205 {
8a1daa321afe cppcheck
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206 *p = (*p ^ 0xff);
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diff changeset
207 }
1
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diff changeset
208 }
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209 }
40
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diff changeset
210 };
8a1daa321afe cppcheck
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parents: 38
diff changeset
211 }
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
212
0f03a8a0bd6f encoding of RT-STRUCT as STL
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diff changeset
213
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
214 static Orthanc::ParsedDicomFile* LoadInstance(const std::string& instanceId)
62abf3c523f9 big endian support, retrieve axes from referenced volume
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215 {
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216 std::string dicom;
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
217
62abf3c523f9 big endian support, retrieve axes from referenced volume
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218 if (!OrthancPlugins::RestApiGetString(dicom, "/instances/" + instanceId + "/file", false))
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
219 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
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220 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
221 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
222 else
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
223 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
224 return new Orthanc::ParsedDicomFile(dicom);
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
225 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
226 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
227
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
228
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
229 static void GetReferencedVolumeAxes(Vector3D& axisX,
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diff changeset
230 Vector3D& axisY,
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
231 const StructureSet& structureSet)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
232 {
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
233 // This is a rough guess for the X/Y axes
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diff changeset
234 axisX = Vector3D(1, 0, 0);
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diff changeset
235 axisY = Vector3D(0, 1, 0);
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
236
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
237 // Look for one instance from the referenced volume
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
238 const std::string& sopInstanceUid = structureSet.GetPolygon(0).GetReferencedSopInstanceUid();
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
239
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
240 Json::Value response;
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
241 if (OrthancPlugins::RestApiPost(response, "/tools/lookup", sopInstanceUid, false))
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
242 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
243 if (response.type() != Json::arrayValue)
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
244 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
245 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
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parents: 28
diff changeset
246 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
247
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
248 bool first = true;
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
249
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
250 for (Json::Value::ArrayIndex i = 0; i < response.size(); i++)
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
251 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
252 if (response[i].type() != Json::objectValue)
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
253 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
254 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
255 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
256
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
257 if (Orthanc::SerializationToolbox::ReadString(response[i], "Type") == "Instance")
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
258 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
259 if (first)
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
260 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
261 const std::string& instanceId = Orthanc::SerializationToolbox::ReadString(response[i], "ID");
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
262 std::unique_ptr<Orthanc::ParsedDicomFile> reference(LoadInstance(instanceId));
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
263
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
264 std::string imageOrientation;
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
265 if (reference->GetTagValue(imageOrientation, Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT))
62abf3c523f9 big endian support, retrieve axes from referenced volume
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
266 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
267 std::vector<std::string> items;
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
268 Orthanc::Toolbox::TokenizeString(items, imageOrientation, '\\');
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
269
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
270 double x1, x2, x3, y1, y2, y3;
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
271
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
272 if (items.size() == 6 &&
33
2460b376d3f7 reorganization
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diff changeset
273 STLToolbox::MyParseDouble(x1, items[0]) &&
2460b376d3f7 reorganization
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diff changeset
274 STLToolbox::MyParseDouble(x2, items[1]) &&
2460b376d3f7 reorganization
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parents: 32
diff changeset
275 STLToolbox::MyParseDouble(x3, items[2]) &&
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276 STLToolbox::MyParseDouble(y1, items[3]) &&
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diff changeset
277 STLToolbox::MyParseDouble(y2, items[4]) &&
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diff changeset
278 STLToolbox::MyParseDouble(y3, items[5]))
29
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279 {
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280 axisX = Vector3D(x1, x2, x3);
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281 axisY = Vector3D(y1, y2, y3);
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282 }
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283 }
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284 }
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285 else
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286 {
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287 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError,
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288 "Multiple instances with the same SOP Instance UID");
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289 }
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290 }
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291 }
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parents: 28
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292 }
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293 }
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294
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295
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296 static bool EncodeStructureSetMesh(std::string& stl,
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297 const StructureSet& structureSet,
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298 const StructureSetGeometry& geometry,
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299 const std::set<std::string>& roiNames,
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300 unsigned int resolution,
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301 bool smooth)
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302 {
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303 if (resolution < 1 ||
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304 structureSet.GetPolygonsCount() < 1)
1
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305 {
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306 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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307 }
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308
33
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diff changeset
309 if (!STLToolbox::IsNear(1, geometry.GetSlicesNormal().ComputeNorm()))
1
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310 {
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311 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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312 }
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313
29
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314 Vector3D axisX, axisY;
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315 GetReferencedVolumeAxes(axisX, axisY, structureSet);
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316
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317 Vector3D axisZ = Vector3D::CrossProduct(axisX, axisY);
1
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diff changeset
318
33
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diff changeset
319 if (!STLToolbox::IsNear(1, axisX.ComputeNorm()) ||
2460b376d3f7 reorganization
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320 !STLToolbox::IsNear(1, axisY.ComputeNorm()) ||
29
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321 !Vector3D::AreParallel(axisZ, geometry.GetSlicesNormal()))
1
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322 {
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323 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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324 }
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325
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diff changeset
326 Extent2D extent;
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diff changeset
327 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
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diff changeset
328 {
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329 structureSet.GetPolygon(i).Add(extent, axisX, axisY);
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330 }
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diff changeset
331
28
410003c50b17 improved computation of RT-STRUCT geometry
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diff changeset
332 const int depth = geometry.GetSlicesCount();
1
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diff changeset
333
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334 vtkNew<vtkImageData> volume;
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335 volume->SetDimensions(resolution, resolution, depth);
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336 volume->AllocateScalars(VTK_UNSIGNED_CHAR, 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
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diff changeset
337
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338 assert(sizeof(unsigned char) == 1);
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339 memset(volume->GetScalarPointer(), 0, resolution * resolution * depth);
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diff changeset
340
30
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341 const double pixelSpacingX = extent.GetWidth() / static_cast<double>(resolution);
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342 const double pixelSpacingY = extent.GetHeight() / static_cast<double>(resolution);
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343 const double pixelSpacingZ = geometry.GetSlicesSpacing();
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diff changeset
344
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diff changeset
345 bool first = true;
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diff changeset
346
1
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diff changeset
347 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
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diff changeset
348 {
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349 const StructurePolygon& polygon = structureSet.GetPolygon(i);
29
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diff changeset
350 if (roiNames.find(polygon.GetRoiName()) != roiNames.end())
1
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diff changeset
351 {
29
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diff changeset
352 // This polygon corresponds to a ROI of interest
1
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diff changeset
353
29
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diff changeset
354 size_t z;
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diff changeset
355 if (geometry.LookupSliceIndex(z, polygon))
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diff changeset
356 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
357 std::vector<Orthanc::ImageProcessing::ImagePoint> points;
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diff changeset
358 points.reserve(polygon.GetPointsCount());
1
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parents: 0
diff changeset
359
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
360 for (size_t j = 0; j < polygon.GetPointsCount(); j++)
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
361 {
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
362 const Vector3D& point = polygon.GetPoint(j);
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diff changeset
363 double x = (Vector3D::DotProduct(point, axisX) - extent.GetMinX()) / extent.GetWidth() * static_cast<double>(resolution);
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parents: 28
diff changeset
364 double y = (Vector3D::DotProduct(point, axisY) - extent.GetMinY()) / extent.GetHeight() * static_cast<double>(resolution);
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parents: 28
diff changeset
365 points.push_back(Orthanc::ImageProcessing::ImagePoint(static_cast<int32_t>(std::floor(x)),
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
366 static_cast<int32_t>(std::floor(y))));
30
3570c23764d4 set stl origin
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parents: 29
diff changeset
367
3570c23764d4 set stl origin
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parents: 29
diff changeset
368 if (first)
3570c23764d4 set stl origin
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diff changeset
369 {
3570c23764d4 set stl origin
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diff changeset
370 first = false;
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diff changeset
371 volume->SetOrigin(point.GetX() - x * pixelSpacingX,
3570c23764d4 set stl origin
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diff changeset
372 point.GetY() - y * pixelSpacingY,
3570c23764d4 set stl origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 29
diff changeset
373 point.GetZ() - z * pixelSpacingZ);
3570c23764d4 set stl origin
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parents: 29
diff changeset
374 }
29
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
375 }
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
376
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
377 Orthanc::ImageAccessor slice;
62abf3c523f9 big endian support, retrieve axes from referenced volume
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diff changeset
378 slice.AssignWritable(Orthanc::PixelFormat_Grayscale8, resolution, resolution, resolution /* pitch */,
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diff changeset
379 reinterpret_cast<uint8_t*>(volume->GetScalarPointer()) + z * resolution * resolution);
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parents: 28
diff changeset
380
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diff changeset
381 XorFiller filler(slice);
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diff changeset
382 Orthanc::ImageProcessing::FillPolygon(filler, points);
62abf3c523f9 big endian support, retrieve axes from referenced volume
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parents: 28
diff changeset
383 }
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
384 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
385 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
386
30
3570c23764d4 set stl origin
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diff changeset
387 volume->SetSpacing(pixelSpacingX, pixelSpacingY, pixelSpacingZ);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
388
32
976da5476810 reorganization
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parents: 31
diff changeset
389 return VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth);
1
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parents: 0
diff changeset
390 }
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parents: 0
diff changeset
391
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
392
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
393 void ListStructures(OrthancPluginRestOutput* output,
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
394 const char* url,
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
395 const OrthancPluginHttpRequest* request)
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
396 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
397 if (request->method != OrthancPluginHttpMethod_Get)
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
398 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
399 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
400 return;
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parents: 0
diff changeset
401 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
402
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
403 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
404
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
405 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
406
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
407 std::set<std::string> names;
33
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
408 StructureSet::ListStructuresNames(names, *dicom);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
409
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
410 Json::Value answer = Json::arrayValue;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
411
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
412 for (std::set<std::string>::const_iterator it = names.begin(); it != names.end(); ++it)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
413 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
414 answer.append(*it);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
415 }
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
416
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
417 std::string s = answer.toStyledString();
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
418 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
419 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
420
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
421
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
422 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
423 const Orthanc::DicomTag& tag,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
424 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
425 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
426 if (!target.isMember(tag.Format()))
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
427 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
428 target[tag.Format()] = value;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
429 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
430 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
431
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
432
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
433 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
434 const DcmTagKey& tag,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
435 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
436 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
437 AddDefaultTagValue(target, Orthanc::DicomTag(tag.getGroup(), tag.getElement()), value);
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
438 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
439
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
440
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
441 static void CallCreateDicom(Json::Value& answer,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
442 const std::string& stl,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
443 const Json::Value& body,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
444 const std::string& parentStudy,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
445 const std::string& defaultSeriesDescription,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
446 const std::string& defaultFrameOfReferenceUid,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
447 const std::string& defaultTitle)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
448 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
449 static const char* const KEY_TAGS = "Tags";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
450
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
451 Json::Value normalized = Json::objectValue;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
452
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
453 if (body.isMember(KEY_TAGS))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
454 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
455 const Json::Value& tags = body[KEY_TAGS];
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
456
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
457 if (tags.type() != Json::objectValue)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
458 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
459 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Tags must be provided as a JSON object");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
460 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
461
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
462 std::vector<std::string> keys = tags.getMemberNames();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
463 for (size_t i = 0; i < keys.size(); i++)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
464 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
465 const Orthanc::DicomTag tag = Orthanc::FromDcmtkBridge::ParseTag(keys[i]);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
466 normalized[tag.Format()] = tags[keys[i]];
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
467 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
468 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
469
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
470 if (!normalized.isMember(Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
471 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
472 normalized[Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()] = defaultSeriesDescription;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
473 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
474
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
475 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_SERIES_NUMBER, "1");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
476 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_FRAME_OF_REFERENCE_UID, defaultFrameOfReferenceUid);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
477 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_INSTANCE_NUMBER, "1");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
478
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
479 AddDefaultTagValue(normalized, DCM_BurnedInAnnotation, "NO");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
480 AddDefaultTagValue(normalized, DCM_DeviceSerialNumber, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
481 AddDefaultTagValue(normalized, DCM_DocumentTitle, defaultTitle);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
482 AddDefaultTagValue(normalized, DCM_Manufacturer, "Orthanc STL plugin");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
483 AddDefaultTagValue(normalized, DCM_ManufacturerModelName, "Orthanc STL plugin");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
484 AddDefaultTagValue(normalized, DCM_PositionReferenceIndicator, "");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
485 AddDefaultTagValue(normalized, DCM_SoftwareVersions, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
486 AddDefaultTagValue(normalized, DCM_ConceptNameCodeSequence, "");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
487
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
488 std::string date, time;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
489 Orthanc::SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
490 AddDefaultTagValue(normalized, DCM_AcquisitionDateTime, date + time);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
491
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
492 const Orthanc::DicomTag MEASUREMENT_UNITS_CODE_SEQUENCE(DCM_MeasurementUnitsCodeSequence.getGroup(),
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
493 DCM_MeasurementUnitsCodeSequence.getElement());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
494
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
495 if (!normalized.isMember(MEASUREMENT_UNITS_CODE_SEQUENCE.Format()))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
496 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
497 Json::Value item;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
498 item["CodeValue"] = "mm";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
499 item["CodingSchemeDesignator"] = "UCUM";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
500 item["CodeMeaning"] = defaultTitle;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
501
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
502 normalized[MEASUREMENT_UNITS_CODE_SEQUENCE.Format()].append(item);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
503 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
504
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
505 std::string content;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
506 Orthanc::Toolbox::EncodeDataUriScheme(content, Orthanc::MIME_STL, stl);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
507
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
508 Json::Value create;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
509 create["Content"] = content;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
510 create["Parent"] = parentStudy;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
511 create["Tags"] = normalized;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
512
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
513 if (!OrthancPlugins::RestApiPost(answer, "/tools/create-dicom", create.toStyledString(), false))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
514 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
515 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Cannot create DICOM from STL");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
516 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
517 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
518
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
519
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
520 void EncodeStructureSet(OrthancPluginRestOutput* output,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
521 const char* url,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
522 const OrthancPluginHttpRequest* request)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
523 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
524 static const char* const KEY_INSTANCE = "Instance";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
525 static const char* const KEY_RESOLUTION = "Resolution";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
526 static const char* const KEY_ROI_NAMES = "RoiNames";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
527 static const char* const KEY_SMOOTH = "Smooth";
28
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
528 static const char* const KEY_STRICT = "Strict";
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
529
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
530 if (request->method != OrthancPluginHttpMethod_Post)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
531 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
532 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
533 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
534 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
535
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
536 Json::Value body;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
537 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
538 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
539 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
540 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
541
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
542 const std::string instanceId = Orthanc::SerializationToolbox::ReadString(body, KEY_INSTANCE);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
543 const bool smooth = (body.isMember(KEY_SMOOTH) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
544 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
545 true /* smooth by default */);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
546 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
547 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
548 256 /* default value */);
28
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
549 const bool strict = (body.isMember(KEY_STRICT) ?
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
550 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_STRICT) :
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
551 true /* strict by default */);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
552
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
553 std::set<std::string> roiNames;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
554 Orthanc::SerializationToolbox::ReadSetOfStrings(roiNames, body, KEY_ROI_NAMES);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
555
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
556 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
557
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
558 StructureSet structureSet(*dicom);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
559
28
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
560 StructureSetGeometry geometry(structureSet, strict);
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
561
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
562 std::string stl;
28
410003c50b17 improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 25
diff changeset
563 if (!EncodeStructureSetMesh(stl, structureSet, geometry, roiNames, resolution, smooth))
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
564 {
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
565 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from RT-STRUCT");
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
566 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
567 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
568 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
569 std::string seriesDescription;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
570
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
571 if (dicom->GetTagValue(seriesDescription, Orthanc::DICOM_TAG_SERIES_DESCRIPTION))
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
572 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
573 seriesDescription += ": ";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
574 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
575 else
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
576 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
577 seriesDescription.clear();
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
578 }
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
579
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
580 bool first = true;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
581 for (std::set<std::string>::const_iterator it = roiNames.begin(); it != roiNames.end(); ++it)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
582 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
583 if (first)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
584 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
585 first = false;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
586 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
587 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
588 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
589 seriesDescription += ", ";
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
590 }
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
591
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
592 seriesDescription += *it;
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
593 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
594
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
595 std::string frameOfReferenceUid;
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
596 if (structureSet.HasFrameOfReferenceUid())
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
597 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
598 frameOfReferenceUid = structureSet.GetFrameOfReferenceUid();
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
599 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
600 else
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
601 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
602 frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
603 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
604
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
605 Json::Value answer;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
606 CallCreateDicom(answer, stl, body, structureSet.HashStudy(), seriesDescription,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
607 frameOfReferenceUid, "STL model generated from DICOM RT-STRUCT");
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
608
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
609 std::string s = answer.toStyledString();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
610 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
611 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
612 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
613
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
614
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
615 void ExtractStl(OrthancPluginRestOutput* output,
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
616 const char* url,
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
617 const OrthancPluginHttpRequest* request)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
618 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
619 if (request->method != OrthancPluginHttpMethod_Get)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
620 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
621 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
622 return;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
623 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
624
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
625 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
626
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
627 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
628 DcmDataset& dataset = *dicom->GetDcmtkObject().getDataset();
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
629
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
630 std::string stl;
33
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
631 if (STLToolbox::GetStringValue(dataset, DCM_MIMETypeOfEncapsulatedDocument) != Orthanc::MIME_STL ||
2460b376d3f7 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 32
diff changeset
632 STLToolbox::GetStringValue(dataset, DCM_SOPClassUID) != UID_EncapsulatedSTLStorage ||
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
633 !dicom->GetTagValue(stl, Orthanc::DICOM_TAG_ENCAPSULATED_DOCUMENT))
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
634 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
635 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "DICOM instance not encapsulating a STL model: " + instanceId);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
636 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
637 else
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
638 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
639 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output,
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
640 stl.empty() ? NULL : stl.c_str(), stl.size(), Orthanc::MIME_STL);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
641 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
642 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
643
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
644
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
645
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
646 void EncodeNifti(OrthancPluginRestOutput* output,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
647 const char* url,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
648 const OrthancPluginHttpRequest* request)
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
649 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
650 static const char* const KEY_NIFTI = "Nifti";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
651 static const char* const KEY_RESOLUTION = "Resolution";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
652 static const char* const KEY_PARENT_STUDY = "ParentStudy";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
653 static const char* const KEY_SMOOTH = "Smooth";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
654
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
655 if (request->method != OrthancPluginHttpMethod_Post)
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
656 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
657 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
658 return;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
659 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
660
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
661 Json::Value body;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
662 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
663 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
664 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
665 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
666
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
667 std::string mime, nifti;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
668 if (!Orthanc::Toolbox::DecodeDataUriScheme(mime, nifti, Orthanc::SerializationToolbox::ReadString(body, KEY_NIFTI)))
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
669 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
670 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Missing the \"Nifti\" argument containing the NIfTI file");
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
671 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
672
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
673 const std::string parentStudy = Orthanc::SerializationToolbox::ReadString(body, KEY_PARENT_STUDY);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
674 const bool smooth = (body.isMember(KEY_SMOOTH) ?
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
675 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
676 true /* smooth by default */);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
677 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
678 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
679 256 /* default value */);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
680
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
681 vtkNew<vtkImageData> volume;
32
976da5476810 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
682 VTKToolbox::LoadNifti(volume.Get(), nifti);
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
683
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
684 std::string stl;
32
976da5476810 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 31
diff changeset
685 if (!VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth))
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
686 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
687 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from NIfTI");
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
688 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
689 else
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
690 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
691 const std::string title = "STL model generated from NIfTI";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
692
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
693 const std::string frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
694
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
695 Json::Value answer;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
696 CallCreateDicom(answer, stl, body, parentStudy, title, frameOfReferenceUid, title);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
697
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
698 std::string s = answer.toStyledString();
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
699 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
700 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
701 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
702
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
703
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
704 extern "C"
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
705 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
706 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
707 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
708 OrthancPlugins::SetGlobalContext(context);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
709
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
710 /* Check the version of the Orthanc core */
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
711 if (OrthancPluginCheckVersion(OrthancPlugins::GetGlobalContext()) == 0)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
712 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
713 char info[1024];
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
714 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
715 OrthancPlugins::GetGlobalContext()->orthancVersion,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
716 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
717 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
718 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
719 OrthancPluginLogError(OrthancPlugins::GetGlobalContext(), info);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
720 return -1;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
721 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
722
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
723 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
724 Orthanc::Logging::InitializePluginContext(context);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
725 #else
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
726 Orthanc::Logging::Initialize(context);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
727 #endif
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
728
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
729 Orthanc::InitializeFramework("", false);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
730
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
731 hasCreateDicomStl_ = OrthancPlugins::CheckMinimalOrthancVersion(1, 12, 1);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
732
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
733 if (!hasCreateDicomStl_)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
734 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
735 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
736 << ") is insufficient to create DICOM STL, it should be above 1.12.1";
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
737 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
738
25
5fc3ea6acbd5 fix deprecated calls
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 24
diff changeset
739 OrthancPlugins::SetDescription(ORTHANC_PLUGIN_NAME, "STL plugin for Orthanc.");
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
740
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
741 OrthancPlugins::RegisterRestCallback<ServeFile>("/stl/app/(.*)", true);
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
742 OrthancPlugins::RegisterRestCallback<ExtractStl>("/instances/([0-9a-f-]+)/stl", true);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
743 OrthancPlugins::RegisterRestCallback<ListStructures>("/stl/rt-struct/([0-9a-f-]+)", true);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
744
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
745 if (hasCreateDicomStl_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
746 {
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
747 OrthancPlugins::RegisterRestCallback<EncodeStructureSet>("/stl/encode-rtstruct", true);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
748 OrthancPlugins::RegisterRestCallback<EncodeNifti>("/stl/encode-nifti", true);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
749 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
750
31
ab231760799d added button to import STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
751 OrthancPlugins::OrthancConfiguration globalConfiguration;
ab231760799d added button to import STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
752 OrthancPlugins::OrthancConfiguration configuration;
ab231760799d added button to import STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
753 globalConfiguration.GetSection(configuration, "STL");
ab231760799d added button to import STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 30
diff changeset
754
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
755 // Extend the default Orthanc Explorer with custom JavaScript for STL
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
756 std::string explorer;
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
757
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
758 {
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
759 Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER);
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
760
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
761 std::map<std::string, std::string> dictionary;
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
762 dictionary["HAS_CREATE_DICOM_STL"] = (hasCreateDicomStl_ ? "true" : "false");
40
8a1daa321afe cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 38
diff changeset
763 dictionary["SHOW_NIFTI_BUTTON"] = (configuration.GetBooleanValue("EnableNIfTI", false) ? "true" : "false");
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
764 explorer = Orthanc::Toolbox::SubstituteVariables(explorer, dictionary);
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
765
25
5fc3ea6acbd5 fix deprecated calls
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 24
diff changeset
766 OrthancPlugins::ExtendOrthancExplorer(ORTHANC_PLUGIN_NAME, explorer);
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
767 }
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
768
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
769 return 0;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
770 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
771
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
772
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
773 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
774 {
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
775 Orthanc::FinalizeFramework();
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
776 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
777
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
778
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
779 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
780 {
25
5fc3ea6acbd5 fix deprecated calls
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 24
diff changeset
781 return ORTHANC_PLUGIN_NAME;
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
782 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
783
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
784
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
785 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
786 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
787 return ORTHANC_STL_VERSION;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
788 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
789 }