Mercurial > hg > orthanc

annotate OrthancServer/Sources/ServerJobs/MergeStudyJob.cpp @ 5752:717acb0ea546 find-refactoring tip

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fix DICOMWeb integration tests
author Alain Mazy <am@orthanc.team>
date Tue, 03 Sep 2024 16:37:31 +0200
parents f7adfb22e20e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU General Public License as
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11 * published by the Free Software Foundation, either version 3 of the
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12 * License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU General Public License
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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21 **/
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22
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24 #include "MergeStudyJob.h"
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25
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26 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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27 #include "../../../OrthancFramework/Sources/Logging.h"
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28 #include "../../../OrthancFramework/Sources/SerializationToolbox.h"
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29 #include "../OrthancConfiguration.h"
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30 #include "../ServerContext.h"
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32
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33 namespace Orthanc
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34 {
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35 static void RegisterSeries(std::map<std::string, std::string>& target,
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36 const std::string& series)
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37 {
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38 // Generate a target SeriesInstanceUID for this series
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39 if (target.find(series) == target.end())
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40 {
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41 target[series] = FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series);
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42 }
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43 }
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46 void MergeStudyJob::AddSourceSeriesInternal(const std::string& series)
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47 {
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48 RegisterSeries(seriesUidMap_, series);
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49
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50 // Add all the instances of the series as to be processed
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51 std::list<std::string> instances;
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52 GetContext().GetIndex().GetChildren(instances, series);
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54 for (std::list<std::string>::const_iterator
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55 it = instances.begin(); it != instances.end(); ++it)
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56 {
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57 AddInstance(*it);
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58 }
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59 }
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60
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61
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62 void MergeStudyJob::AddSourceStudyInternal(const std::string& study)
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63 {
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64 if (study == targetStudy_)
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65 {
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66 throw OrthancException(ErrorCode_UnknownResource,
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67 "Cannot merge a study into the same study: " + study);
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68 }
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69 else
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70 {
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71 std::list<std::string> series;
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72 GetContext().GetIndex().GetChildren(series, study);
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73
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74 for (std::list<std::string>::const_iterator
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75 it = series.begin(); it != series.end(); ++it)
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76 {
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77 AddSourceSeriesInternal(*it);
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78 }
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79 }
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80 }
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81
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82
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83 bool MergeStudyJob::HandleInstance(const std::string& instance)
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84 {
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85 if (!HasTrailingStep())
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86 {
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87 throw OrthancException(ErrorCode_BadSequenceOfCalls,
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88 "AddTrailingStep() should have been called after AddSourceXXX()");
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89 }
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90
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91 /**
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92 * Retrieve the DICOM instance to be modified
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93 **/
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94
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95 std::unique_ptr<ParsedDicomFile> modified;
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96
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97 try
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98 {
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99 ServerContext::DicomCacheLocker locker(GetContext(), instance);
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100 modified.reset(locker.GetDicom().Clone(true));
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101 }
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102 catch (OrthancException&)
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103 {
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104 LOG(WARNING) << "An instance was removed after the job was issued: " << instance;
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105 return false;
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106 }
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107
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108
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109 /**
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110 * Chose the target UIDs
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111 **/
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112
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113 std::string series = modified->GetHasher().HashSeries();
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114
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115 SeriesUidMap::const_iterator targetSeriesUid = seriesUidMap_.find(series);
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116
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117 if (targetSeriesUid == seriesUidMap_.end())
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118 {
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119 throw OrthancException(ErrorCode_BadFileFormat); // Should never happen
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120 }
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121
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122
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123 /**
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124 * Copy the tags from the "Patient Module Attributes" and "General
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125 * Study Module Attributes" modules of the target study
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126 **/
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127
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128 for (std::set<DicomTag>::const_iterator it = removals_.begin();
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129 it != removals_.end(); ++it)
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130 {
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131 modified->Remove(*it);
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132 }
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133
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134 for (Replacements::const_iterator it = replacements_.begin();
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135 it != replacements_.end(); ++it)
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136 {
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137 modified->ReplacePlainString(it->first, it->second);
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138 }
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139
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140
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141 /**
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142 * Store the new instance into Orthanc
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143 **/
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144
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145 modified->ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, targetSeriesUid->second);
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146
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147 // Fix since Orthanc 1.5.8: Assign new "SOPInstanceUID", as the instance has been modified
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148 modified->ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
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149
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150 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*modified));
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151 toStore->SetOrigin(origin_);
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152
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153 std::string modifiedInstance;
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154 ServerContext::StoreResult result = GetContext().Store(modifiedInstance, *toStore, StoreInstanceMode_Default);
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155 if (result.GetStatus() != StoreStatus_Success)
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156 {
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157 LOG(ERROR) << "Error while storing a modified instance " << instance;
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158 return false;
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159 }
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160
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161 return true;
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162 }
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163
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164
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165 MergeStudyJob::MergeStudyJob(ServerContext& context,
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166 const std::string& targetStudy) :
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167 CleaningInstancesJob(context, false /* by default, remove source instances */),
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168 targetStudy_(targetStudy)
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169 {
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170 /**
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171 * Check the validity of the input ID
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172 **/
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173
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174 ResourceType type;
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175
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176 if (!GetContext().GetIndex().LookupResourceType(type, targetStudy) ||
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177 type != ResourceType_Study)
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178 {
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179 throw OrthancException(ErrorCode_UnknownResource,
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180 "Cannot merge into an unknown study: " + targetStudy);
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181 }
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182
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183
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184 /**
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185 * Detect the tags to be removed/replaced by parsing one child
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186 * instance of the study
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187 **/
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188
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189 DicomTag::AddTagsForModule(removals_, DicomModule_Patient);
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190 DicomTag::AddTagsForModule(removals_, DicomModule_Study);
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191
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192 std::list<std::string> instances;
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193 GetContext().GetIndex().GetChildInstances(instances, targetStudy);
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194
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195 if (instances.empty())
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196 {
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197 throw OrthancException(ErrorCode_UnknownResource);
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198 }
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199
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200 DicomMap dicom;
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201
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202 {
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203 ServerContext::DicomCacheLocker locker(GetContext(), instances.front());
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0ddc5297a8ab centralization of default parameters for JSON/DicomMap conversions from DCMTK
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204 OrthancConfiguration::DefaultExtractDicomSummary(dicom, locker.GetDicom());
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205 }
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206
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207 const std::set<DicomTag> moduleTags = removals_;
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208 for (std::set<DicomTag>::const_iterator it = moduleTags.begin();
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209 it != moduleTags.end(); ++it)
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210 {
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211 const DicomValue* value = dicom.TestAndGetValue(*it);
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212 std::string str;
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213
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214 if (value != NULL &&
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215 value->CopyToString(str, false))
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216 {
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217 removals_.erase(*it);
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diff changeset
218 replacements_.insert(std::make_pair(*it, str));
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219 }
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diff changeset
220 }
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diff changeset
221 }
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diff changeset
222
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223
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224 void MergeStudyJob::SetOrigin(const DicomInstanceOrigin& origin)
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225 {
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diff changeset
226 if (IsStarted())
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227 {
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228 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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229 }
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diff changeset
230 else
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diff changeset
231 {
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diff changeset
232 origin_ = origin;
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233 }
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234 }
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235
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236
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diff changeset
237 void MergeStudyJob::SetOrigin(const RestApiCall& call)
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238 {
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diff changeset
239 SetOrigin(DicomInstanceOrigin::FromRest(call));
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240 }
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241
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242
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fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
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diff changeset
243 void MergeStudyJob::AddSource(const std::string& publicId)
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244 {
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diff changeset
245 ResourceType level;
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diff changeset
246
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
248 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
249 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
250 }
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
251 else if (!GetContext().GetIndex().LookupResourceType(level, publicId))
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
252 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
253 throw OrthancException(ErrorCode_UnknownResource,
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
254 "Cannot find this resource: " + publicId);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
255 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 switch (level)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260 case ResourceType_Study:
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
261 AddSourceStudyInternal(publicId);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264 case ResourceType_Series:
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
265 AddSourceSeries(publicId);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
266 break;
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
267
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
268 case ResourceType_Instance:
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
269 AddSourceInstance(publicId);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272 default:
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
273 throw OrthancException(ErrorCode_UnknownResource,
4715
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
274 "This resource is neither a study, nor a series, nor an instance: " +
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
275 publicId + " is a " + std::string(EnumerationToString(level)));
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281 void MergeStudyJob::AddSourceSeries(const std::string& series)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283 std::string parent;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 }
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
289 else if (!GetContext().GetIndex().LookupParent(parent, series, ResourceType_Study))
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290 {
2955
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parents: 2860
diff changeset
291 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
292 "This resource is not a series: " + series);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
293 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
294 else if (parent == targetStudy_)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
295 {
2955
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parents: 2860
diff changeset
296 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
297 "Cannot merge series " + series +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
298 " into its parent study " + targetStudy_);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
299 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
300 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
301 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 AddSourceSeriesInternal(series);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
305
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
306
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
307 void MergeStudyJob::AddSourceStudy(const std::string& study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309 ResourceType actualLevel;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 }
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
315 else if (!GetContext().GetIndex().LookupResourceType(actualLevel, study) ||
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316 actualLevel != ResourceType_Study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
318 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
319 "This resource is not a study: " + study);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 AddSourceStudyInternal(study);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
328 void MergeStudyJob::AddSourceInstance(const std::string& instance)
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
329 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
330 std::string parentStudy, parentSeries;
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
331
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
332 if (IsStarted())
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
333 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
334 throw OrthancException(ErrorCode_BadSequenceOfCalls);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
335 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
336 else if (!GetContext().GetIndex().LookupParent(parentSeries, instance, ResourceType_Series) ||
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
337 !GetContext().GetIndex().LookupParent(parentStudy, parentSeries, ResourceType_Study))
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
338 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
339 throw OrthancException(ErrorCode_UnknownResource,
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
340 "This resource is not an instance: " + instance);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
341 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
342 else if (parentStudy == targetStudy_)
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
343 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
344 throw OrthancException(ErrorCode_UnknownResource,
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
345 "Cannot merge instance " + instance +
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
346 " into its parent study " + targetStudy_);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
347 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
348 else
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
349 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
350 RegisterSeries(seriesUidMap_, parentSeries);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
351 AddInstance(instance);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
352 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
353 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
354
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
355
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356 void MergeStudyJob::GetPublicContent(Json::Value& value)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
357 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
358 CleaningInstancesJob::GetPublicContent(value);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359 value["TargetStudy"] = targetStudy_;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 static const char* TARGET_STUDY = "TargetStudy";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 static const char* REPLACEMENTS = "Replacements";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 static const char* REMOVALS = "Removals";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 static const char* SERIES_UID_MAP = "SeriesUIDMap";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367 static const char* ORIGIN = "Origin";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 MergeStudyJob::MergeStudyJob(ServerContext& context,
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 const Json::Value& serialized) :
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
372 CleaningInstancesJob(context, serialized,
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
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373 false /* by default, remove source instances */) // (*)
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374 {
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375 if (!HasTrailingStep())
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376 {
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377 // Should have been set by (*)
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378 throw OrthancException(ErrorCode_InternalError);
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379 }
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380
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381 targetStudy_ = SerializationToolbox::ReadString(serialized, TARGET_STUDY);
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382 SerializationToolbox::ReadMapOfTags(replacements_, serialized, REPLACEMENTS);
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383 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS);
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384 SerializationToolbox::ReadMapOfStrings(seriesUidMap_, serialized, SERIES_UID_MAP);
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385 origin_ = DicomInstanceOrigin(serialized[ORIGIN]);
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386 }
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387
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388
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389 bool MergeStudyJob::Serialize(Json::Value& target)
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390 {
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391 if (!CleaningInstancesJob::Serialize(target))
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392 {
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393 return false;
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394 }
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395 else
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396 {
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397 target[TARGET_STUDY] = targetStudy_;
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Sebastien Jodogne <s.jodogne@gmail.com>
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398 SerializationToolbox::WriteMapOfTags(target, replacements_, REPLACEMENTS);
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399 SerializationToolbox::WriteSetOfTags(target, removals_, REMOVALS);
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400 SerializationToolbox::WriteMapOfStrings(target, seriesUidMap_, SERIES_UID_MAP);
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401 origin_.Serialize(target[ORIGIN]);
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402
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403 return true;
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404 }
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405 }
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406 }