Mercurial > hg > orthanc

annotate OrthancServer/Sources/ServerJobs/MergeStudyJob.cpp @ 4140:0ddc5297a8ab

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centralization of default parameters for JSON/DicomMap conversions from DCMTK
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 07 Aug 2020 10:46:50 +0200
parents a4f28efdfccf
children d9473bd5ed43
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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34 #include "MergeStudyJob.h"
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35
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36 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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37 #include "../../../OrthancFramework/Sources/Logging.h"
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38 #include "../../../OrthancFramework/Sources/SerializationToolbox.h"
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39 #include "../OrthancConfiguration.h"
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40 #include "../ServerContext.h"
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42
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43 namespace Orthanc
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44 {
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45 void MergeStudyJob::AddSourceSeriesInternal(const std::string& series)
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46 {
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47 // Generate a target SeriesInstanceUID for this series
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48 seriesUidMap_[series] = FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series);
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49
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50 // Add all the instances of the series as to be processed
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51 std::list<std::string> instances;
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52 GetContext().GetIndex().GetChildren(instances, series);
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54 for (std::list<std::string>::const_iterator
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55 it = instances.begin(); it != instances.end(); ++it)
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56 {
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57 AddInstance(*it);
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58 }
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59 }
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62 void MergeStudyJob::AddSourceStudyInternal(const std::string& study)
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63 {
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64 if (study == targetStudy_)
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65 {
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66 throw OrthancException(ErrorCode_UnknownResource,
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67 "Cannot merge a study into the same study: " + study);
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68 }
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69 else
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70 {
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71 std::list<std::string> series;
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72 GetContext().GetIndex().GetChildren(series, study);
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73
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74 for (std::list<std::string>::const_iterator
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75 it = series.begin(); it != series.end(); ++it)
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76 {
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77 AddSourceSeriesInternal(*it);
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78 }
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79 }
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80 }
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81
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82
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83 bool MergeStudyJob::HandleInstance(const std::string& instance)
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84 {
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85 if (!HasTrailingStep())
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86 {
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87 throw OrthancException(ErrorCode_BadSequenceOfCalls,
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88 "AddTrailingStep() should have been called after AddSourceXXX()");
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89 }
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90
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91 /**
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92 * Retrieve the DICOM instance to be modified
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93 **/
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94
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95 std::unique_ptr<ParsedDicomFile> modified;
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96
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97 try
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98 {
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99 ServerContext::DicomCacheLocker locker(GetContext(), instance);
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100 modified.reset(locker.GetDicom().Clone(true));
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101 }
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102 catch (OrthancException&)
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103 {
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104 LOG(WARNING) << "An instance was removed after the job was issued: " << instance;
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105 return false;
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106 }
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107
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108
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109 /**
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110 * Chose the target UIDs
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111 **/
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112
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113 std::string series = modified->GetHasher().HashSeries();
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115 SeriesUidMap::const_iterator targetSeriesUid = seriesUidMap_.find(series);
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116
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117 if (targetSeriesUid == seriesUidMap_.end())
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118 {
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119 throw OrthancException(ErrorCode_BadFileFormat); // Should never happen
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120 }
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121
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122
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123 /**
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124 * Copy the tags from the "Patient Module Attributes" and "General
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125 * Study Module Attributes" modules of the target study
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126 **/
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127
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128 for (std::set<DicomTag>::const_iterator it = removals_.begin();
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129 it != removals_.end(); ++it)
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130 {
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131 modified->Remove(*it);
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132 }
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133
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134 for (Replacements::const_iterator it = replacements_.begin();
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135 it != replacements_.end(); ++it)
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136 {
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137 modified->ReplacePlainString(it->first, it->second);
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138 }
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139
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140
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141 /**
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142 * Store the new instance into Orthanc
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143 **/
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144
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145 modified->ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, targetSeriesUid->second);
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146
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147 // Fix since Orthanc 1.5.8: Assign new "SOPInstanceUID", as the instance has been modified
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148 modified->ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
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149
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150 DicomInstanceToStore toStore;
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151 toStore.SetOrigin(origin_);
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152 toStore.SetParsedDicomFile(*modified);
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153
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154 std::string modifiedInstance;
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155 if (GetContext().Store(modifiedInstance, toStore,
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156 StoreInstanceMode_Default) != StoreStatus_Success)
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157 {
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158 LOG(ERROR) << "Error while storing a modified instance " << instance;
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159 return false;
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160 }
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161
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162 return true;
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163 }
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164
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165
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166 MergeStudyJob::MergeStudyJob(ServerContext& context,
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167 const std::string& targetStudy) :
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168 CleaningInstancesJob(context, false /* by default, remove source instances */),
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169 targetStudy_(targetStudy)
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170 {
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171 /**
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172 * Check the validity of the input ID
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173 **/
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174
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175 ResourceType type;
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176
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177 if (!GetContext().GetIndex().LookupResourceType(type, targetStudy) ||
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178 type != ResourceType_Study)
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179 {
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180 throw OrthancException(ErrorCode_UnknownResource,
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181 "Cannot merge into an unknown study: " + targetStudy);
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182 }
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183
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184
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185 /**
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186 * Detect the tags to be removed/replaced by parsing one child
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187 * instance of the study
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188 **/
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189
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190 DicomTag::AddTagsForModule(removals_, DicomModule_Patient);
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191 DicomTag::AddTagsForModule(removals_, DicomModule_Study);
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192
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193 std::list<std::string> instances;
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194 GetContext().GetIndex().GetChildInstances(instances, targetStudy);
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195
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196 if (instances.empty())
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197 {
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198 throw OrthancException(ErrorCode_UnknownResource);
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199 }
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200
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201 DicomMap dicom;
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202
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203 {
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204 ServerContext::DicomCacheLocker locker(GetContext(), instances.front());
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205 OrthancConfiguration::DefaultExtractDicomSummary(dicom, locker.GetDicom());
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206 }
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207
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208 const std::set<DicomTag> moduleTags = removals_;
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209 for (std::set<DicomTag>::const_iterator it = moduleTags.begin();
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210 it != moduleTags.end(); ++it)
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211 {
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212 const DicomValue* value = dicom.TestAndGetValue(*it);
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213 std::string str;
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214
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215 if (value != NULL &&
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216 value->CopyToString(str, false))
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217 {
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218 removals_.erase(*it);
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219 replacements_.insert(std::make_pair(*it, str));
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220 }
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221 }
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222 }
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223
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224
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225 void MergeStudyJob::SetOrigin(const DicomInstanceOrigin& origin)
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226 {
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227 if (IsStarted())
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228 {
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229 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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230 }
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231 else
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232 {
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233 origin_ = origin;
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234 }
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235 }
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236
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237
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238 void MergeStudyJob::SetOrigin(const RestApiCall& call)
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239 {
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240 SetOrigin(DicomInstanceOrigin::FromRest(call));
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241 }
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242
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243
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244 void MergeStudyJob::AddSource(const std::string& studyOrSeries)
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245 {
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parents:
diff changeset
246 ResourceType level;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
248 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
249 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
250 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251 }
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
252 else if (!GetContext().GetIndex().LookupResourceType(level, studyOrSeries))
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
253 {
2955
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diff changeset
254 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
255 "Cannot find this resource: " + studyOrSeries);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 switch (level)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 case ResourceType_Study:
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262 AddSourceStudyInternal(studyOrSeries);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 case ResourceType_Series:
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
266 AddSourceSeries(studyOrSeries);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 default:
2955
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270 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
271 "This resource is neither a study, nor a series: " +
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
272 studyOrSeries + " is a " +
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
273 std::string(EnumerationToString(level)));
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
274 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
275 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279 void MergeStudyJob::AddSourceSeries(const std::string& series)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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diff changeset
280 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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diff changeset
281 std::string parent;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
282
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
284 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
285 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286 }
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
287 else if (!GetContext().GetIndex().LookupParent(parent, series, ResourceType_Study))
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 {
2955
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diff changeset
289 throw OrthancException(ErrorCode_UnknownResource,
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parents: 2860
diff changeset
290 "This resource is not a series: " + series);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
292 else if (parent == targetStudy_)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
293 {
2955
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diff changeset
294 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
295 "Cannot merge series " + series +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
296 " into its parent study " + targetStudy_);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
297 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
298 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
299 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
300 AddSourceSeriesInternal(series);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
301 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
305 void MergeStudyJob::AddSourceStudy(const std::string& study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
306 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
307 ResourceType actualLevel;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 }
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
313 else if (!GetContext().GetIndex().LookupResourceType(actualLevel, study) ||
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 actualLevel != ResourceType_Study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315 {
2955
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parents: 2860
diff changeset
316 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
317 "This resource is not a study: " + study);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321 AddSourceStudyInternal(study);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 void MergeStudyJob::GetPublicContent(Json::Value& value)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
328 CleaningInstancesJob::GetPublicContent(value);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 value["TargetStudy"] = targetStudy_;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333 static const char* TARGET_STUDY = "TargetStudy";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334 static const char* REPLACEMENTS = "Replacements";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 static const char* REMOVALS = "Removals";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 static const char* SERIES_UID_MAP = "SeriesUIDMap";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
337 static const char* ORIGIN = "Origin";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
338
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
339
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
340 MergeStudyJob::MergeStudyJob(ServerContext& context,
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
341 const Json::Value& serialized) :
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
342 CleaningInstancesJob(context, serialized,
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
343 false /* by default, remove source instances */) // (*)
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
344 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
345 if (!HasTrailingStep())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
346 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
347 // Should have been set by (*)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
348 throw OrthancException(ErrorCode_InternalError);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
349 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
350
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
351 targetStudy_ = SerializationToolbox::ReadString(serialized, TARGET_STUDY);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
352 SerializationToolbox::ReadMapOfTags(replacements_, serialized, REPLACEMENTS);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
353 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
354 SerializationToolbox::ReadMapOfStrings(seriesUidMap_, serialized, SERIES_UID_MAP);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
355 origin_ = DicomInstanceOrigin(serialized[ORIGIN]);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
357
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
358
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359 bool MergeStudyJob::Serialize(Json::Value& target)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
361 if (!CleaningInstancesJob::Serialize(target))
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 return false;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367 target[TARGET_STUDY] = targetStudy_;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368 SerializationToolbox::WriteMapOfTags(target, replacements_, REPLACEMENTS);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 SerializationToolbox::WriteSetOfTags(target, removals_, REMOVALS);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 SerializationToolbox::WriteMapOfStrings(target, seriesUidMap_, SERIES_UID_MAP);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 origin_.Serialize(target[ORIGIN]);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373 return true;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 }