Mercurial > hg > orthanc

annotate OrthancServer/ServerJobs/MergeStudyJob.cpp @ 3940:3661e2a72482 transcoding

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safeguard in merge/split job
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 18 May 2020 17:41:05 +0200
parents 023b2a9f3aa1
children 771dbd9eb3bd
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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34 #include "MergeStudyJob.h"
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35
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36 #include "../../Core/DicomParsing/FromDcmtkBridge.h"
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37 #include "../../Core/Logging.h"
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38 #include "../../Core/SerializationToolbox.h"
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39 #include "../ServerContext.h"
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41
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42 namespace Orthanc
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43 {
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44 void MergeStudyJob::AddSourceSeriesInternal(const std::string& series)
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45 {
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46 // Generate a target SeriesInstanceUID for this series
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47 seriesUidMap_[series] = FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series);
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48
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49 // Add all the instances of the series as to be processed
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50 std::list<std::string> instances;
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51 context_.GetIndex().GetChildren(instances, series);
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52
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53 for (std::list<std::string>::const_iterator
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54 it = instances.begin(); it != instances.end(); ++it)
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55 {
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56 AddInstance(*it);
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57 }
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58 }
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59
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60
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61 void MergeStudyJob::AddSourceStudyInternal(const std::string& study)
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62 {
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63 if (study == targetStudy_)
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64 {
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65 throw OrthancException(ErrorCode_UnknownResource,
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66 "Cannot merge a study into the same study: " + study);
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67 }
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68 else
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69 {
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70 std::list<std::string> series;
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71 context_.GetIndex().GetChildren(series, study);
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72
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73 for (std::list<std::string>::const_iterator
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74 it = series.begin(); it != series.end(); ++it)
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75 {
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76 AddSourceSeriesInternal(*it);
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77 }
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78 }
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79 }
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80
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81
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82 bool MergeStudyJob::HandleInstance(const std::string& instance)
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83 {
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84 if (!HasTrailingStep())
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85 {
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86 throw OrthancException(ErrorCode_BadSequenceOfCalls,
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87 "AddTrailingStep() should have been called after AddSourceXXX()");
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88 }
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89
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90 /**
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91 * Retrieve the DICOM instance to be modified
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92 **/
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93
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94 std::unique_ptr<ParsedDicomFile> modified;
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95
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96 try
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97 {
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98 ServerContext::DicomCacheLocker locker(context_, instance);
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99 modified.reset(locker.GetDicom().Clone(true));
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100 }
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101 catch (OrthancException&)
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102 {
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103 LOG(WARNING) << "An instance was removed after the job was issued: " << instance;
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104 return false;
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105 }
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106
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107
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108 /**
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109 * Chose the target UIDs
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110 **/
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111
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112 std::string series = modified->GetHasher().HashSeries();
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113
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114 SeriesUidMap::const_iterator targetSeriesUid = seriesUidMap_.find(series);
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115
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116 if (targetSeriesUid == seriesUidMap_.end())
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117 {
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118 throw OrthancException(ErrorCode_BadFileFormat); // Should never happen
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119 }
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120
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121
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122 /**
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123 * Copy the tags from the "Patient Module Attributes" and "General
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124 * Study Module Attributes" modules of the target study
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125 **/
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126
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127 for (std::set<DicomTag>::const_iterator it = removals_.begin();
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128 it != removals_.end(); ++it)
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129 {
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130 modified->Remove(*it);
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131 }
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132
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133 for (Replacements::const_iterator it = replacements_.begin();
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134 it != replacements_.end(); ++it)
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135 {
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136 modified->ReplacePlainString(it->first, it->second);
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137 }
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138
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139
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140 /**
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141 * Store the new instance into Orthanc
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142 **/
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143
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144 modified->ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, targetSeriesUid->second);
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145
3507
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146 // Fix since Orthanc 1.5.8: Assign new "SOPInstanceUID", as the instance has been modified
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147 modified->ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
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148
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149 DicomInstanceToStore toStore;
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150 toStore.SetOrigin(origin_);
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151 toStore.SetParsedDicomFile(*modified);
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152
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153 std::string modifiedInstance;
3814
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154 if (context_.Store(modifiedInstance, toStore,
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155 StoreInstanceMode_Default) != StoreStatus_Success)
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156 {
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157 LOG(ERROR) << "Error while storing a modified instance " << instance;
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158 return false;
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159 }
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160
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161 return true;
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162 }
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163
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164
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165 bool MergeStudyJob::HandleTrailingStep()
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166 {
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167 if (!keepSource_)
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168 {
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169 const size_t n = GetInstancesCount();
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170
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171 for (size_t i = 0; i < n; i++)
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172 {
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173 Json::Value tmp;
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174 context_.DeleteResource(tmp, GetInstance(i), ResourceType_Instance);
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175 }
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176 }
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177
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178 return true;
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179 }
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180
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181
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182 MergeStudyJob::MergeStudyJob(ServerContext& context,
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183 const std::string& targetStudy) :
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184 context_(context),
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185 keepSource_(false),
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186 targetStudy_(targetStudy)
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187 {
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188 /**
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189 * Check the validity of the input ID
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190 **/
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191
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192 ResourceType type;
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193
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194 if (!context_.GetIndex().LookupResourceType(type, targetStudy) ||
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195 type != ResourceType_Study)
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196 {
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197 throw OrthancException(ErrorCode_UnknownResource,
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198 "Cannot merge into an unknown study: " + targetStudy);
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199 }
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200
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diff changeset
201
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202 /**
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203 * Detect the tags to be removed/replaced by parsing one child
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204 * instance of the study
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205 **/
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206
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207 DicomTag::AddTagsForModule(removals_, DicomModule_Patient);
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208 DicomTag::AddTagsForModule(removals_, DicomModule_Study);
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209
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210 std::list<std::string> instances;
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211 context_.GetIndex().GetChildInstances(instances, targetStudy);
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212
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213 if (instances.empty())
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214 {
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215 throw OrthancException(ErrorCode_UnknownResource);
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216 }
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217
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218 DicomMap dicom;
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219
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diff changeset
220 {
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diff changeset
221 ServerContext::DicomCacheLocker locker(context_, instances.front());
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222 locker.GetDicom().ExtractDicomSummary(dicom);
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223 }
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diff changeset
224
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diff changeset
225 const std::set<DicomTag> moduleTags = removals_;
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226 for (std::set<DicomTag>::const_iterator it = moduleTags.begin();
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diff changeset
227 it != moduleTags.end(); ++it)
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228 {
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229 const DicomValue* value = dicom.TestAndGetValue(*it);
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diff changeset
230 std::string str;
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diff changeset
231
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diff changeset
232 if (value != NULL &&
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diff changeset
233 value->CopyToString(str, false))
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234 {
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diff changeset
235 removals_.erase(*it);
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diff changeset
236 replacements_.insert(std::make_pair(*it, str));
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diff changeset
237 }
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parents:
diff changeset
238 }
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parents:
diff changeset
239 }
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parents:
diff changeset
240
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parents:
diff changeset
241
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parents:
diff changeset
242 void MergeStudyJob::SetOrigin(const DicomInstanceOrigin& origin)
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243 {
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diff changeset
244 if (IsStarted())
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diff changeset
245 {
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diff changeset
246 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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diff changeset
247 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
248 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
249 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
250 origin_ = origin;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
252 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
253
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
254
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
255 void MergeStudyJob::SetOrigin(const RestApiCall& call)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 SetOrigin(DicomInstanceOrigin::FromRest(call));
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 void MergeStudyJob::AddSource(const std::string& studyOrSeries)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263 ResourceType level;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 else if (!context_.GetIndex().LookupResourceType(level, studyOrSeries))
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
271 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
272 "Cannot find this resource: " + studyOrSeries);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 switch (level)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 case ResourceType_Study:
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279 AddSourceStudyInternal(studyOrSeries);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282 case ResourceType_Series:
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283 AddSourceSeries(studyOrSeries);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286 default:
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
287 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
288 "This resource is neither a study, nor a series: " +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
289 studyOrSeries + " is a " +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
290 std::string(EnumerationToString(level)));
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
293 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
294
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
295
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
296 void MergeStudyJob::AddSourceSeries(const std::string& series)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
297 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
298 std::string parent;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
299
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
300 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
301 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304 else if (!context_.GetIndex().LookupParent(parent, series, ResourceType_Study))
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
305 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
306 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
307 "This resource is not a series: " + series);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309 else if (parent == targetStudy_)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
311 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
312 "Cannot merge series " + series +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
313 " into its parent study " + targetStudy_);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 AddSourceSeriesInternal(series);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 void MergeStudyJob::AddSourceStudy(const std::string& study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 ResourceType actualLevel;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 else if (!context_.GetIndex().LookupResourceType(actualLevel, study) ||
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 actualLevel != ResourceType_Study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
333 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
334 "This resource is not a study: " + study);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
337 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
338 AddSourceStudyInternal(study);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
339 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
340 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
341
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
342
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
343 void MergeStudyJob::SetKeepSource(bool keep)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
344 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
345 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
346 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
347 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
348 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
349
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
350 keepSource_ = keep;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
351 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
352
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
353
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
354 void MergeStudyJob::GetPublicContent(Json::Value& value)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
355 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356 SetOfInstancesJob::GetPublicContent(value);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
357 value["TargetStudy"] = targetStudy_;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
358 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361 static const char* KEEP_SOURCE = "KeepSource";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362 static const char* TARGET_STUDY = "TargetStudy";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 static const char* REPLACEMENTS = "Replacements";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 static const char* REMOVALS = "Removals";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 static const char* SERIES_UID_MAP = "SeriesUIDMap";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 static const char* ORIGIN = "Origin";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 MergeStudyJob::MergeStudyJob(ServerContext& context,
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 const Json::Value& serialized) :
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 SetOfInstancesJob(serialized), // (*)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 context_(context)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 if (!HasTrailingStep())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 // Should have been set by (*)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377 throw OrthancException(ErrorCode_InternalError);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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379
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Sebastien Jodogne <s.jodogne@gmail.com>
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380 keepSource_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SOURCE);
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381 targetStudy_ = SerializationToolbox::ReadString(serialized, TARGET_STUDY);
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382 SerializationToolbox::ReadMapOfTags(replacements_, serialized, REPLACEMENTS);
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383 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS);
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384 SerializationToolbox::ReadMapOfStrings(seriesUidMap_, serialized, SERIES_UID_MAP);
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Sebastien Jodogne <s.jodogne@gmail.com>
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385 origin_ = DicomInstanceOrigin(serialized[ORIGIN]);
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386 }
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parents:
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387
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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388
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Sebastien Jodogne <s.jodogne@gmail.com>
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389 bool MergeStudyJob::Serialize(Json::Value& target)
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Sebastien Jodogne <s.jodogne@gmail.com>
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390 {
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Sebastien Jodogne <s.jodogne@gmail.com>
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391 if (!SetOfInstancesJob::Serialize(target))
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Sebastien Jodogne <s.jodogne@gmail.com>
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392 {
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Sebastien Jodogne <s.jodogne@gmail.com>
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393 return false;
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Sebastien Jodogne <s.jodogne@gmail.com>
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394 }
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Sebastien Jodogne <s.jodogne@gmail.com>
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395 else
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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396 {
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Sebastien Jodogne <s.jodogne@gmail.com>
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397 target[KEEP_SOURCE] = keepSource_;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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398 target[TARGET_STUDY] = targetStudy_;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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399 SerializationToolbox::WriteMapOfTags(target, replacements_, REPLACEMENTS);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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400 SerializationToolbox::WriteSetOfTags(target, removals_, REMOVALS);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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401 SerializationToolbox::WriteMapOfStrings(target, seriesUidMap_, SERIES_UID_MAP);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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402 origin_.Serialize(target[ORIGIN]);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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403
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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404 return true;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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405 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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407 }