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annotate OrthancFramework/Sources/DicomNetworking/DicomFindAnswers.cpp @ 5640:f7adfb22e20e

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updated copyright, as Orthanc Team now replaces Osimis
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 30 May 2024 21:19:57 +0200
parents 48b8dae6dc77
children
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU Lesser General Public License
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11 * as published by the Free Software Foundation, either version 3 of
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12 * the License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * Lesser General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU Lesser General Public
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20 * License along with this program. If not, see
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21 * <http://www.gnu.org/licenses/>.
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22 **/
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25 #include "../PrecompiledHeaders.h"
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26 #include "DicomFindAnswers.h"
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28 #include "../DicomParsing/FromDcmtkBridge.h"
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29 #include "../OrthancException.h"
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31 #include <memory>
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32 #include <dcmtk/dcmdata/dcfilefo.h>
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33 #include <boost/noncopyable.hpp>
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34
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35
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36 namespace Orthanc
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37 {
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38 void DicomFindAnswers::AddAnswerInternal(ParsedDicomFile* answer)
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39 {
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40 std::unique_ptr<ParsedDicomFile> protection(answer);
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41
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42 if (isWorklist_)
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43 {
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44 // These lines are necessary when serving worklists, otherwise
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45 // Orthanc does not behave as "wlmscpfs"
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46 protection->Remove(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID);
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47 protection->Remove(DICOM_TAG_SOP_INSTANCE_UID);
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48 }
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49
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50 protection->ChangeEncoding(encoding_);
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52 answers_.push_back(protection.release());
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53 }
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56 DicomFindAnswers::DicomFindAnswers(bool isWorklist) :
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57 encoding_(GetDefaultDicomEncoding()),
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58 isWorklist_(isWorklist),
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59 complete_(true)
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60 {
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61 }
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63 DicomFindAnswers::~DicomFindAnswers()
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64 {
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65 Clear();
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66 }
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68 Encoding DicomFindAnswers::GetEncoding() const
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69 {
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70 return encoding_;
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71 }
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72
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74 void DicomFindAnswers::SetEncoding(Encoding encoding)
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75 {
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76 for (size_t i = 0; i < answers_.size(); i++)
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77 {
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78 assert(answers_[i] != NULL);
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79 answers_[i]->ChangeEncoding(encoding);
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80 }
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81
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82 encoding_ = encoding;
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83 }
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84
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85
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86 void DicomFindAnswers::SetWorklist(bool isWorklist)
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87 {
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88 if (answers_.empty())
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89 {
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90 isWorklist_ = isWorklist;
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91 }
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92 else
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93 {
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94 // This set of answers is not empty anymore, cannot change its type
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95 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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96 }
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97 }
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98
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99 bool DicomFindAnswers::IsWorklist() const
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100 {
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101 return isWorklist_;
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102 }
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103
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104
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105 void DicomFindAnswers::Clear()
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106 {
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107 for (size_t i = 0; i < answers_.size(); i++)
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108 {
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109 assert(answers_[i] != NULL);
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110 delete answers_[i];
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111 }
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112
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113 answers_.clear();
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114 }
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115
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116
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117 void DicomFindAnswers::Reserve(size_t size)
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118 {
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119 if (size > answers_.size())
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120 {
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121 answers_.reserve(size);
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122 }
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123 }
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124
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125
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126 void DicomFindAnswers::Add(const DicomMap& map)
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127 {
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128 // We use the permissive mode to be tolerant wrt. invalid DICOM
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129 // files that contain some tags with out-of-range values (such
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130 // tags are removed from the answers)
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131 AddAnswerInternal(new ParsedDicomFile(map, encoding_, true /* permissive */));
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132 //"" /* no private creator */));
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133 }
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134
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135
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136 void DicomFindAnswers::Add(const ParsedDicomFile& dicom)
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137 {
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138 AddAnswerInternal(dicom.Clone(true));
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139 }
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140
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141 void DicomFindAnswers::Add(const void* dicom,
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142 size_t size)
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143 {
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144 AddAnswerInternal(new ParsedDicomFile(dicom, size));
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145 }
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146
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147 size_t DicomFindAnswers::GetSize() const
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148 {
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149 return answers_.size();
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150 }
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151
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152
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153 ParsedDicomFile& DicomFindAnswers::GetAnswer(size_t index) const
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154 {
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155 if (index < answers_.size())
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156 {
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157 return *answers_[index];
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158 }
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159 else
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160 {
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161 throw OrthancException(ErrorCode_ParameterOutOfRange);
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162 }
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163 }
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164
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165
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166 DcmDataset* DicomFindAnswers::ExtractDcmDataset(size_t index) const
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167 {
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168 // As "DicomFindAnswers" stores its content using class
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169 // "ParsedDicomFile" (that internally uses "DcmFileFormat" from
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170 // DCMTK), the dataset can contain tags that are reserved if
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171 // storing the media on the disk, notably tag
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172 // "MediaStorageSOPClassUID" (0002,0002). In this function, we
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173 // remove all those tags whose group is below 0x0008. The
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174 // resulting data set is clean for emission in the C-FIND SCP.
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175
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176 // http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.html#sect_C.4.1.1.3
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177 // https://groups.google.com/d/msg/orthanc-users/D3kpPuX8yV0/_zgHOzkMEQAJ
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178
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179 DcmDataset& source = *GetAnswer(index).GetDcmtkObject().getDataset();
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180
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181 std::unique_ptr<DcmDataset> target(new DcmDataset);
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182
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183 for (unsigned long i = 0; i < source.card(); i++)
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184 {
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185 const DcmElement* element = source.getElement(i);
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186 assert(element != NULL);
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187
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188 if (element != NULL &&
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189 element->getTag().getGroup() >= 0x0008 &&
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190 element->getTag().getElement() != 0x0000)
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191 {
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192 target->insert(dynamic_cast<DcmElement*>(element->clone()));
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193 }
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194 }
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195
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196 return target.release();
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197 }
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198
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199
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200 void DicomFindAnswers::ToJson(Json::Value& target,
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201 size_t index,
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202 DicomToJsonFormat format) const
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203 {
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204 const ParsedDicomFile& answer = GetAnswer(index);
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205 answer.DatasetToJson(target, format, DicomToJsonFlags_None, 0);
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206 }
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207
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208
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209 void DicomFindAnswers::ToJson(Json::Value& target,
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210 DicomToJsonFormat format) const
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211 {
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212 target = Json::arrayValue;
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213
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214 for (size_t i = 0; i < GetSize(); i++)
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215 {
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216 Json::Value answer;
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217 ToJson(answer, i, format);
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218 target.append(answer);
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219 }
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220 }
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221
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222
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223 bool DicomFindAnswers::IsComplete() const
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224 {
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225 return complete_;
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226 }
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227
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228 void DicomFindAnswers::SetComplete(bool isComplete)
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229 {
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230 complete_ = isComplete;
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231 }
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232
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233
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234 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1
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235 void DicomFindAnswers::Add(ParsedDicomFile& dicom)
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236 {
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237 return Add(const_cast<const ParsedDicomFile&>(dicom));
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238 }
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239
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240 void DicomFindAnswers::ToJson(Json::Value& target,
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241 size_t index,
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242 bool simplify) const
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243 {
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244 DicomToJsonFormat format = (simplify ? DicomToJsonFormat_Human : DicomToJsonFormat_Full);
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245 ToJson(target, index, format);
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246 }
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247
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248
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249 void DicomFindAnswers::ToJson(Json::Value& target,
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250 bool simplify) const
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251 {
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252 DicomToJsonFormat format = (simplify ? DicomToJsonFormat_Human : DicomToJsonFormat_Full);
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253 ToJson(target, format);
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254 }
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0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
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255 #endif
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3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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256 }