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annotate OrthancFramework/Sources/DicomNetworking/DicomFindAnswers.cpp @ 4273:0034f855c023

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tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 03 Nov 2020 12:24:50 +0100
parents 318c16cfccab
children 3b70a2e6a06c
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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23 #include "../PrecompiledHeaders.h"
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24 #include "DicomFindAnswers.h"
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26 #include "../DicomParsing/FromDcmtkBridge.h"
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27 #include "../OrthancException.h"
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29 #include <memory>
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30 #include <dcmtk/dcmdata/dcfilefo.h>
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31 #include <boost/noncopyable.hpp>
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34 namespace Orthanc
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35 {
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36 void DicomFindAnswers::AddAnswerInternal(ParsedDicomFile* answer)
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37 {
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38 std::unique_ptr<ParsedDicomFile> protection(answer);
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39
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40 if (isWorklist_)
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41 {
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42 // These lines are necessary when serving worklists, otherwise
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43 // Orthanc does not behave as "wlmscpfs"
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44 protection->Remove(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID);
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45 protection->Remove(DICOM_TAG_SOP_INSTANCE_UID);
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46 }
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47
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48 protection->ChangeEncoding(encoding_);
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50 answers_.push_back(protection.release());
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51 }
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54 DicomFindAnswers::DicomFindAnswers(bool isWorklist) :
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55 encoding_(GetDefaultDicomEncoding()),
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56 isWorklist_(isWorklist),
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57 complete_(true)
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58 {
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59 }
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62 void DicomFindAnswers::SetEncoding(Encoding encoding)
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63 {
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64 for (size_t i = 0; i < answers_.size(); i++)
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65 {
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66 assert(answers_[i] != NULL);
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67 answers_[i]->ChangeEncoding(encoding);
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68 }
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69
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70 encoding_ = encoding;
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71 }
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73
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74 void DicomFindAnswers::SetWorklist(bool isWorklist)
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75 {
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76 if (answers_.empty())
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77 {
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78 isWorklist_ = isWorklist;
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79 }
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80 else
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81 {
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82 // This set of answers is not empty anymore, cannot change its type
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83 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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84 }
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85 }
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87
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88 void DicomFindAnswers::Clear()
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89 {
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90 for (size_t i = 0; i < answers_.size(); i++)
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91 {
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92 assert(answers_[i] != NULL);
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93 delete answers_[i];
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94 }
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95
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96 answers_.clear();
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97 }
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98
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99
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100 void DicomFindAnswers::Reserve(size_t size)
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101 {
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102 if (size > answers_.size())
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103 {
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104 answers_.reserve(size);
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105 }
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106 }
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107
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108
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109 void DicomFindAnswers::Add(const DicomMap& map)
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110 {
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111 // We use the permissive mode to be tolerant wrt. invalid DICOM
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112 // files that contain some tags with out-of-range values (such
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113 // tags are removed from the answers)
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114 AddAnswerInternal(new ParsedDicomFile(map, encoding_, true /* permissive */));
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115 //"" /* no private creator */));
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116 }
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117
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118
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119 void DicomFindAnswers::Add(const ParsedDicomFile& dicom)
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120 {
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121 AddAnswerInternal(dicom.Clone(true));
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122 }
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123
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124 void DicomFindAnswers::Add(const void* dicom,
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125 size_t size)
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126 {
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127 AddAnswerInternal(new ParsedDicomFile(dicom, size));
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128 }
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129
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130
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131 ParsedDicomFile& DicomFindAnswers::GetAnswer(size_t index) const
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132 {
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133 if (index < answers_.size())
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134 {
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135 return *answers_[index];
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136 }
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137 else
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138 {
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139 throw OrthancException(ErrorCode_ParameterOutOfRange);
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140 }
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141 }
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142
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143
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144 DcmDataset* DicomFindAnswers::ExtractDcmDataset(size_t index) const
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145 {
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146 // As "DicomFindAnswers" stores its content using class
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147 // "ParsedDicomFile" (that internally uses "DcmFileFormat" from
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148 // DCMTK), the dataset can contain tags that are reserved if
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149 // storing the media on the disk, notably tag
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150 // "MediaStorageSOPClassUID" (0002,0002). In this function, we
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151 // remove all those tags whose group is below 0x0008. The
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152 // resulting data set is clean for emission in the C-FIND SCP.
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153
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154 // http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.html#sect_C.4.1.1.3
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155 // https://groups.google.com/d/msg/orthanc-users/D3kpPuX8yV0/_zgHOzkMEQAJ
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156
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157 DcmDataset& source = *GetAnswer(index).GetDcmtkObject().getDataset();
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158
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159 std::unique_ptr<DcmDataset> target(new DcmDataset);
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160
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161 for (unsigned long i = 0; i < source.card(); i++)
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162 {
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163 const DcmElement* element = source.getElement(i);
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164 assert(element != NULL);
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165
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166 if (element != NULL &&
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167 element->getTag().getGroup() >= 0x0008 &&
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168 element->getTag().getElement() != 0x0000)
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169 {
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170 target->insert(dynamic_cast<DcmElement*>(element->clone()));
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171 }
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172 }
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173
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174 return target.release();
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175 }
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176
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177
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178 void DicomFindAnswers::ToJson(Json::Value& target,
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179 size_t index,
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180 bool simplify) const
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181 {
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182 DicomToJsonFormat format = (simplify ? DicomToJsonFormat_Human : DicomToJsonFormat_Full);
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183
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184 const ParsedDicomFile& answer = GetAnswer(index);
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185 answer.DatasetToJson(target, format, DicomToJsonFlags_None, 0);
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186 }
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187
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188
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189 void DicomFindAnswers::ToJson(Json::Value& target,
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190 bool simplify) const
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191 {
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192 target = Json::arrayValue;
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193
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194 for (size_t i = 0; i < GetSize(); i++)
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195 {
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196 Json::Value answer;
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197 ToJson(answer, i, simplify);
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198 target.append(answer);
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199 }
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200 }
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201
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202
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203 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1
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204 void DicomFindAnswers::Add(ParsedDicomFile& dicom)
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205 {
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206 return Add(const_cast<const ParsedDicomFile&>(dicom));
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207 }
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208 #endif
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209 }