Mercurial > hg > orthanc
annotate Core/DicomParsing/ParsedDicomFile.h @ 4042:f5c86a00cae0
moving DownloadOrthancFramework.cmake to Resources/CMake/
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 10 Jun 2020 16:44:29 +0200 |
| parents | cc6ed76bba27 |
| children |
| rev | line source |
|---|---|
| 790 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 790 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
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36 #include "../OrthancFramework.h" |
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37 |
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38 #if !defined(ORTHANC_ENABLE_JPEG) |
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39 # error Macro ORTHANC_ENABLE_JPEG must be defined to use this file |
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40 #endif |
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41 |
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42 #if !defined(ORTHANC_ENABLE_PNG) |
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43 # error Macro ORTHANC_ENABLE_PNG must be defined to use this file |
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44 #endif |
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45 |
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46 #if !defined(ORTHANC_ENABLE_CIVETWEB) |
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47 # error Macro ORTHANC_ENABLE_CIVETWEB must be defined to use this file |
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48 #endif |
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49 |
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50 #if !defined(ORTHANC_ENABLE_MONGOOSE) |
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51 # error Macro ORTHANC_ENABLE_MONGOOSE must be defined to use this file |
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52 #endif |
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53 |
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54 #if !defined(ORTHANC_SANDBOXED) |
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55 # error The macro ORTHANC_SANDBOXED must be defined |
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56 #endif |
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57 |
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58 #if !defined(ORTHANC_ENABLE_DCMTK) |
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59 # error The macro ORTHANC_ENABLE_DCMTK must be defined |
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60 #endif |
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61 |
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62 #if ORTHANC_ENABLE_DCMTK != 1 |
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63 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 to use this file |
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64 #endif |
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65 |
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66 #include "ITagVisitor.h" |
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67 #include "../DicomFormat/DicomInstanceHasher.h" |
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68 #include "../Images/ImageAccessor.h" |
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69 #include "../IDynamicObject.h" |
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70 #include "../Toolbox.h" |
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71 |
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72 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
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73 # include "../RestApi/RestApiOutput.h" |
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74 #endif |
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75 |
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76 #include <boost/shared_ptr.hpp> |
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77 |
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78 |
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79 class DcmDataset; |
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80 class DcmFileFormat; |
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81 |
| 790 | 82 namespace Orthanc |
| 83 { | |
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84 class ORTHANC_PUBLIC ParsedDicomFile : public IDynamicObject |
| 790 | 85 { |
| 86 private: | |
| 794 | 87 struct PImpl; |
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88 boost::shared_ptr<PImpl> pimpl_; |
| 790 | 89 |
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90 ParsedDicomFile(ParsedDicomFile& other, |
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91 bool keepSopInstanceUid); |
| 790 | 92 |
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93 void CreateFromDicomMap(const DicomMap& source, |
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94 Encoding defaultEncoding, |
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95 bool permissive, |
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96 const std::string& defaultPrivateCreator, |
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97 const std::map<uint16_t, std::string>& privateCreators); |
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98 |
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99 void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep); |
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100 |
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101 void UpdateStorageUid(const DicomTag& tag, |
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102 const std::string& value, |
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103 bool decodeDataUriScheme); |
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104 |
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105 void InvalidateCache(); |
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106 |
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107 bool EmbedContentInternal(const std::string& dataUriScheme); |
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108 |
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109 ParsedDicomFile(DcmFileFormat* dicom); // This takes ownership (no clone) |
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110 |
| 790 | 111 public: |
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112 ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance |
| 790 | 113 |
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114 ParsedDicomFile(const DicomMap& map, |
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115 Encoding defaultEncoding, |
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116 bool permissive |
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117 ); |
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118 |
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119 ParsedDicomFile(const DicomMap& map, |
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120 Encoding defaultEncoding, |
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121 bool permissive, |
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122 const std::string& defaultPrivateCreator, |
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123 const std::map<uint16_t, std::string>& privateCreators |
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124 ); |
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125 |
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126 ParsedDicomFile(const void* content, |
| 791 | 127 size_t size); |
| 790 | 128 |
| 791 | 129 ParsedDicomFile(const std::string& content); |
| 790 | 130 |
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131 ParsedDicomFile(DcmDataset& dicom); // This clones the DCMTK object |
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132 |
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133 ParsedDicomFile(DcmFileFormat& dicom); // This clones the DCMTK object |
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134 |
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135 static ParsedDicomFile* AcquireDcmtkObject(DcmFileFormat* dicom) // No clone here |
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136 { |
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137 return new ParsedDicomFile(dicom); |
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138 } |
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139 |
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140 DcmFileFormat& GetDcmtkObject() const; |
| 790 | 141 |
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142 // The "ParsedDicomFile" object cannot be used after calling this method |
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143 DcmFileFormat* ReleaseDcmtkObject(); |
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144 |
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145 ParsedDicomFile* Clone(bool keepSopInstanceUid); |
| 790 | 146 |
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147 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
| 790 | 148 void SendPathValue(RestApiOutput& output, |
| 149 const UriComponents& uri); | |
| 150 | |
| 151 void Answer(RestApiOutput& output); | |
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152 #endif |
| 790 | 153 |
| 154 void Remove(const DicomTag& tag); | |
| 155 | |
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156 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) |
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157 void Clear(const DicomTag& tag, |
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158 bool onlyIfExists); |
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159 |
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160 void Replace(const DicomTag& tag, |
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161 const std::string& utf8Value, |
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162 bool decodeDataUriScheme, |
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163 DicomReplaceMode mode, |
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164 const std::string& privateCreator /* used only for private tags */); |
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| 166 void Replace(const DicomTag& tag, | |
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167 const Json::Value& value, // Assumed to be encoded with UTF-8 |
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168 bool decodeDataUriScheme, |
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169 DicomReplaceMode mode, |
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170 const std::string& privateCreator /* used only for private tags */); |
| 790 | 171 |
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172 void Insert(const DicomTag& tag, |
| 1695 | 173 const Json::Value& value, // Assumed to be encoded with UTF-8 |
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174 bool decodeDataUriScheme, |
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175 const std::string& privateCreator /* used only for private tags */); |
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176 |
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177 // Cannot be applied to private tags |
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178 void ReplacePlainString(const DicomTag& tag, |
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179 const std::string& utf8Value); |
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180 |
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181 // Cannot be applied to private tags |
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182 void SetIfAbsent(const DicomTag& tag, |
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183 const std::string& utf8Value); |
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184 |
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185 void RemovePrivateTags() |
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186 { |
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187 RemovePrivateTagsInternal(NULL); |
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188 } |
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189 |
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190 void RemovePrivateTags(const std::set<DicomTag>& toKeep) |
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191 { |
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192 RemovePrivateTagsInternal(&toKeep); |
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193 } |
| 790 | 194 |
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195 // WARNING: This function handles the decoding of strings to UTF8 |
| 790 | 196 bool GetTagValue(std::string& value, |
| 197 const DicomTag& tag); | |
| 198 | |
| 199 DicomInstanceHasher GetHasher(); | |
| 200 | |
| 201 void SaveToMemoryBuffer(std::string& buffer); | |
| 202 | |
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203 #if ORTHANC_SANDBOXED == 0 |
| 790 | 204 void SaveToFile(const std::string& path); |
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205 #endif |
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206 |
| 1562 | 207 void EmbedContent(const std::string& dataUriScheme); |
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208 |
| 1562 | 209 void EmbedImage(const ImageAccessor& accessor); |
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210 |
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211 void EmbedImage(MimeType mime, |
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212 const std::string& content); |
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213 |
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214 Encoding DetectEncoding(bool& hasCodeExtensions) const; |
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215 |
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216 // WARNING: This function only sets the encoding, it will not |
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217 // convert the encoding of the tags. Use "ChangeEncoding()" if need be. |
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218 void SetEncoding(Encoding encoding); |
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219 |
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220 void DatasetToJson(Json::Value& target, |
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221 DicomToJsonFormat format, |
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222 DicomToJsonFlags flags, |
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223 unsigned int maxStringLength); |
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224 |
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225 void DatasetToJson(Json::Value& target, |
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226 DicomToJsonFormat format, |
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227 DicomToJsonFlags flags, |
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228 unsigned int maxStringLength, |
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229 const std::set<DicomTag>& ignoreTagLength); |
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230 |
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231 // This version uses the default parameters for |
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232 // FileContentType_DicomAsJson |
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233 void DatasetToJson(Json::Value& target, |
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234 const std::set<DicomTag>& ignoreTagLength); |
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235 |
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236 void DatasetToJson(Json::Value& target); |
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237 |
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238 void HeaderToJson(Json::Value& target, |
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239 DicomToJsonFormat format); |
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240 |
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241 bool HasTag(const DicomTag& tag) const; |
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242 |
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243 void EmbedPdf(const std::string& pdf); |
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244 |
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245 bool ExtractPdf(std::string& pdf); |
|
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246 |
|
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247 void GetRawFrame(std::string& target, // OUT |
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248 MimeType& mime, // OUT |
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249 unsigned int frameId); // IN |
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250 |
|
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251 unsigned int GetFramesCount() const; |
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252 |
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253 static ParsedDicomFile* CreateFromJson(const Json::Value& value, |
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254 DicomFromJsonFlags flags, |
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255 const std::string& privateCreator); |
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256 |
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257 void ChangeEncoding(Encoding target); |
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258 |
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259 void ExtractDicomSummary(DicomMap& target) const; |
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260 |
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261 void ExtractDicomSummary(DicomMap& target, |
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262 const std::set<DicomTag>& ignoreTagLength) const; |
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263 |
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264 bool LookupTransferSyntax(std::string& result); |
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265 |
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266 bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const; |
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267 |
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268 void Apply(ITagVisitor& visitor); |
| 790 | 269 }; |
| 270 } |