Mercurial > hg > orthanc
annotate Core/DicomParsing/ParsedDicomFile.h @ 4007:884b55ce01f6
Private tags returned by C-FIND SCP
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Sat, 06 Jun 2020 14:50:21 +0200 |
| parents | f9863630ec7f |
| children | cc6ed76bba27 |
| rev | line source |
|---|---|
| 790 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 790 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
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36 #include "../OrthancFramework.h" |
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37 |
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38 #if !defined(ORTHANC_ENABLE_JPEG) |
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39 # error Macro ORTHANC_ENABLE_JPEG must be defined to use this file |
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40 #endif |
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41 |
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42 #if !defined(ORTHANC_ENABLE_PNG) |
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43 # error Macro ORTHANC_ENABLE_PNG must be defined to use this file |
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44 #endif |
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45 |
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46 #if !defined(ORTHANC_ENABLE_CIVETWEB) |
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47 # error Macro ORTHANC_ENABLE_CIVETWEB must be defined to use this file |
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48 #endif |
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49 |
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50 #if !defined(ORTHANC_ENABLE_MONGOOSE) |
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51 # error Macro ORTHANC_ENABLE_MONGOOSE must be defined to use this file |
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52 #endif |
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53 |
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54 #if !defined(ORTHANC_SANDBOXED) |
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55 # error The macro ORTHANC_SANDBOXED must be defined |
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56 #endif |
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57 |
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58 #if !defined(ORTHANC_ENABLE_DCMTK) |
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59 # error The macro ORTHANC_ENABLE_DCMTK must be defined |
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60 #endif |
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61 |
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62 #if ORTHANC_ENABLE_DCMTK != 1 |
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63 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 to use this file |
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64 #endif |
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65 |
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66 #include "ITagVisitor.h" |
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67 #include "../DicomFormat/DicomInstanceHasher.h" |
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68 #include "../Images/ImageAccessor.h" |
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69 #include "../IDynamicObject.h" |
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70 #include "../Toolbox.h" |
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71 |
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72 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
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73 # include "../RestApi/RestApiOutput.h" |
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74 #endif |
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75 |
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76 #include <boost/shared_ptr.hpp> |
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77 |
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78 |
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79 class DcmDataset; |
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80 class DcmFileFormat; |
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81 |
| 790 | 82 namespace Orthanc |
| 83 { | |
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84 class ORTHANC_PUBLIC ParsedDicomFile : public IDynamicObject |
| 790 | 85 { |
| 86 private: | |
| 794 | 87 struct PImpl; |
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88 boost::shared_ptr<PImpl> pimpl_; |
| 790 | 89 |
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90 ParsedDicomFile(ParsedDicomFile& other, |
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91 bool keepSopInstanceUid); |
| 790 | 92 |
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93 void CreateFromDicomMap(const DicomMap& source, |
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94 Encoding defaultEncoding, |
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95 bool permissive, |
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96 const std::string& privateCreator); |
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97 |
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98 void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep); |
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99 |
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100 void UpdateStorageUid(const DicomTag& tag, |
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101 const std::string& value, |
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102 bool decodeDataUriScheme); |
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103 |
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104 void InvalidateCache(); |
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105 |
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106 bool EmbedContentInternal(const std::string& dataUriScheme); |
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107 |
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108 ParsedDicomFile(DcmFileFormat* dicom); // This takes ownership (no clone) |
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109 |
| 790 | 110 public: |
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111 ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance |
| 790 | 112 |
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113 ParsedDicomFile(const DicomMap& map, |
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114 Encoding defaultEncoding, |
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115 bool permissive, |
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116 const std::string& privateCreator); |
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117 |
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118 ParsedDicomFile(const void* content, |
| 791 | 119 size_t size); |
| 790 | 120 |
| 791 | 121 ParsedDicomFile(const std::string& content); |
| 790 | 122 |
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123 ParsedDicomFile(DcmDataset& dicom); // This clones the DCMTK object |
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124 |
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125 ParsedDicomFile(DcmFileFormat& dicom); // This clones the DCMTK object |
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126 |
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127 static ParsedDicomFile* AcquireDcmtkObject(DcmFileFormat* dicom) // No clone here |
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128 { |
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129 return new ParsedDicomFile(dicom); |
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130 } |
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131 |
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132 DcmFileFormat& GetDcmtkObject() const; |
| 790 | 133 |
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134 // The "ParsedDicomFile" object cannot be used after calling this method |
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135 DcmFileFormat* ReleaseDcmtkObject(); |
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136 |
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137 ParsedDicomFile* Clone(bool keepSopInstanceUid); |
| 790 | 138 |
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139 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
| 790 | 140 void SendPathValue(RestApiOutput& output, |
| 141 const UriComponents& uri); | |
| 142 | |
| 143 void Answer(RestApiOutput& output); | |
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144 #endif |
| 790 | 145 |
| 146 void Remove(const DicomTag& tag); | |
| 147 | |
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148 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) |
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149 void Clear(const DicomTag& tag, |
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150 bool onlyIfExists); |
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151 |
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152 void Replace(const DicomTag& tag, |
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153 const std::string& utf8Value, |
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154 bool decodeDataUriScheme, |
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155 DicomReplaceMode mode, |
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156 const std::string& privateCreator /* used only for private tags */); |
| 1695 | 157 |
| 158 void Replace(const DicomTag& tag, | |
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159 const Json::Value& value, // Assumed to be encoded with UTF-8 |
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160 bool decodeDataUriScheme, |
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161 DicomReplaceMode mode, |
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162 const std::string& privateCreator /* used only for private tags */); |
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164 void Insert(const DicomTag& tag, |
| 1695 | 165 const Json::Value& value, // Assumed to be encoded with UTF-8 |
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166 bool decodeDataUriScheme, |
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167 const std::string& privateCreator /* used only for private tags */); |
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168 |
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169 // Cannot be applied to private tags |
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170 void ReplacePlainString(const DicomTag& tag, |
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171 const std::string& utf8Value); |
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172 |
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173 // Cannot be applied to private tags |
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174 void SetIfAbsent(const DicomTag& tag, |
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175 const std::string& utf8Value); |
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176 |
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177 void RemovePrivateTags() |
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178 { |
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179 RemovePrivateTagsInternal(NULL); |
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180 } |
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181 |
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182 void RemovePrivateTags(const std::set<DicomTag>& toKeep) |
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183 { |
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184 RemovePrivateTagsInternal(&toKeep); |
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185 } |
| 790 | 186 |
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187 // WARNING: This function handles the decoding of strings to UTF8 |
| 790 | 188 bool GetTagValue(std::string& value, |
| 189 const DicomTag& tag); | |
| 190 | |
| 191 DicomInstanceHasher GetHasher(); | |
| 192 | |
| 193 void SaveToMemoryBuffer(std::string& buffer); | |
| 194 | |
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195 #if ORTHANC_SANDBOXED == 0 |
| 790 | 196 void SaveToFile(const std::string& path); |
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197 #endif |
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198 |
| 1562 | 199 void EmbedContent(const std::string& dataUriScheme); |
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200 |
| 1562 | 201 void EmbedImage(const ImageAccessor& accessor); |
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202 |
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203 void EmbedImage(MimeType mime, |
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204 const std::string& content); |
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205 |
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206 Encoding DetectEncoding(bool& hasCodeExtensions) const; |
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207 |
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208 // WARNING: This function only sets the encoding, it will not |
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209 // convert the encoding of the tags. Use "ChangeEncoding()" if need be. |
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210 void SetEncoding(Encoding encoding); |
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211 |
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212 void DatasetToJson(Json::Value& target, |
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213 DicomToJsonFormat format, |
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214 DicomToJsonFlags flags, |
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215 unsigned int maxStringLength); |
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216 |
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217 void DatasetToJson(Json::Value& target, |
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218 DicomToJsonFormat format, |
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219 DicomToJsonFlags flags, |
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220 unsigned int maxStringLength, |
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221 const std::set<DicomTag>& ignoreTagLength); |
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222 |
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223 // This version uses the default parameters for |
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224 // FileContentType_DicomAsJson |
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225 void DatasetToJson(Json::Value& target, |
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226 const std::set<DicomTag>& ignoreTagLength); |
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227 |
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228 void DatasetToJson(Json::Value& target); |
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229 |
|
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230 void HeaderToJson(Json::Value& target, |
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231 DicomToJsonFormat format); |
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232 |
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233 bool HasTag(const DicomTag& tag) const; |
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234 |
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235 void EmbedPdf(const std::string& pdf); |
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236 |
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237 bool ExtractPdf(std::string& pdf); |
|
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238 |
|
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239 void GetRawFrame(std::string& target, // OUT |
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240 MimeType& mime, // OUT |
|
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241 unsigned int frameId); // IN |
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242 |
|
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243 unsigned int GetFramesCount() const; |
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244 |
|
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245 static ParsedDicomFile* CreateFromJson(const Json::Value& value, |
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246 DicomFromJsonFlags flags, |
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247 const std::string& privateCreator); |
|
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248 |
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249 void ChangeEncoding(Encoding target); |
|
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250 |
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251 void ExtractDicomSummary(DicomMap& target) const; |
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252 |
|
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253 void ExtractDicomSummary(DicomMap& target, |
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254 const std::set<DicomTag>& ignoreTagLength) const; |
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255 |
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256 bool LookupTransferSyntax(std::string& result); |
|
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257 |
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258 bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const; |
|
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259 |
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260 void Apply(ITagVisitor& visitor); |
| 790 | 261 }; |
| 262 } |