Mercurial > hg > orthanc
annotate Core/DicomParsing/ParsedDicomFile.h @ 3944:aae045f802f4 transcoding
preparing simplified interface for IDicomTranscoder
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 19 May 2020 10:17:06 +0200 |
| parents | 7610af1532c3 |
| children | f9863630ec7f |
| rev | line source |
|---|---|
| 790 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 790 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
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36 #if !defined(ORTHANC_ENABLE_JPEG) |
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37 # error Macro ORTHANC_ENABLE_JPEG must be defined to use this file |
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38 #endif |
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39 |
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40 #if !defined(ORTHANC_ENABLE_PNG) |
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41 # error Macro ORTHANC_ENABLE_PNG must be defined to use this file |
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42 #endif |
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43 |
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44 #if !defined(ORTHANC_ENABLE_CIVETWEB) |
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45 # error Macro ORTHANC_ENABLE_CIVETWEB must be defined to use this file |
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46 #endif |
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47 |
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48 #if !defined(ORTHANC_ENABLE_MONGOOSE) |
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49 # error Macro ORTHANC_ENABLE_MONGOOSE must be defined to use this file |
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50 #endif |
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51 |
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52 #if !defined(ORTHANC_SANDBOXED) |
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53 # error The macro ORTHANC_SANDBOXED must be defined |
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54 #endif |
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55 |
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56 #if !defined(ORTHANC_ENABLE_DCMTK) |
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57 # error The macro ORTHANC_ENABLE_DCMTK must be defined |
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58 #endif |
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59 |
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60 #if ORTHANC_ENABLE_DCMTK != 1 |
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61 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 to use this file |
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62 #endif |
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63 |
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64 #include "ITagVisitor.h" |
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65 #include "../DicomFormat/DicomInstanceHasher.h" |
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66 #include "../Images/ImageAccessor.h" |
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67 #include "../IDynamicObject.h" |
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68 #include "../Toolbox.h" |
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69 |
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70 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
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71 # include "../RestApi/RestApiOutput.h" |
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72 #endif |
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73 |
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74 #include <boost/shared_ptr.hpp> |
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75 |
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76 |
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77 class DcmDataset; |
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78 class DcmFileFormat; |
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79 |
| 790 | 80 namespace Orthanc |
| 81 { | |
| 82 class ParsedDicomFile : public IDynamicObject | |
| 83 { | |
| 84 private: | |
| 794 | 85 struct PImpl; |
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86 boost::shared_ptr<PImpl> pimpl_; |
| 790 | 87 |
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88 ParsedDicomFile(ParsedDicomFile& other, |
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89 bool keepSopInstanceUid); |
| 790 | 90 |
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91 void CreateFromDicomMap(const DicomMap& source, |
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92 Encoding defaultEncoding, |
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93 bool permissive); |
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94 |
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95 void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep); |
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96 |
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97 void UpdateStorageUid(const DicomTag& tag, |
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98 const std::string& value, |
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99 bool decodeDataUriScheme); |
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100 |
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101 void InvalidateCache(); |
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102 |
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103 bool EmbedContentInternal(const std::string& dataUriScheme); |
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104 |
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105 ParsedDicomFile(DcmFileFormat* dicom); // This takes ownership (no clone) |
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106 |
| 790 | 107 public: |
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108 ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance |
| 790 | 109 |
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110 ParsedDicomFile(const DicomMap& map, |
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111 Encoding defaultEncoding, |
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112 bool permissive); |
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113 |
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114 ParsedDicomFile(const void* content, |
| 791 | 115 size_t size); |
| 790 | 116 |
| 791 | 117 ParsedDicomFile(const std::string& content); |
| 790 | 118 |
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119 ParsedDicomFile(DcmDataset& dicom); // This clones the DCMTK object |
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120 |
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121 ParsedDicomFile(DcmFileFormat& dicom); // This clones the DCMTK object |
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122 |
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123 static ParsedDicomFile* AcquireDcmtkObject(DcmFileFormat* dicom) // No clone here |
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124 { |
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125 return new ParsedDicomFile(dicom); |
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126 } |
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127 |
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128 DcmFileFormat& GetDcmtkObject() const; |
| 790 | 129 |
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130 // The "ParsedDicomFile" object cannot be used after calling this method |
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131 DcmFileFormat* ReleaseDcmtkObject(); |
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132 |
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133 ParsedDicomFile* Clone(bool keepSopInstanceUid); |
| 790 | 134 |
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135 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
| 790 | 136 void SendPathValue(RestApiOutput& output, |
| 137 const UriComponents& uri); | |
| 138 | |
| 139 void Answer(RestApiOutput& output); | |
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140 #endif |
| 790 | 141 |
| 142 void Remove(const DicomTag& tag); | |
| 143 | |
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144 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) |
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145 void Clear(const DicomTag& tag, |
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146 bool onlyIfExists); |
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147 |
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148 void Replace(const DicomTag& tag, |
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149 const std::string& utf8Value, |
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150 bool decodeDataUriScheme, |
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151 DicomReplaceMode mode, |
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152 const std::string& privateCreator /* used only for private tags */); |
| 1695 | 153 |
| 154 void Replace(const DicomTag& tag, | |
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155 const Json::Value& value, // Assumed to be encoded with UTF-8 |
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156 bool decodeDataUriScheme, |
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157 DicomReplaceMode mode, |
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158 const std::string& privateCreator /* used only for private tags */); |
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160 void Insert(const DicomTag& tag, |
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162 bool decodeDataUriScheme, |
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163 const std::string& privateCreator /* used only for private tags */); |
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164 |
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165 // Cannot be applied to private tags |
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166 void ReplacePlainString(const DicomTag& tag, |
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167 const std::string& utf8Value); |
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168 |
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169 // Cannot be applied to private tags |
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170 void SetIfAbsent(const DicomTag& tag, |
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171 const std::string& utf8Value); |
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172 |
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173 void RemovePrivateTags() |
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174 { |
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175 RemovePrivateTagsInternal(NULL); |
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176 } |
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177 |
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178 void RemovePrivateTags(const std::set<DicomTag>& toKeep) |
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179 { |
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180 RemovePrivateTagsInternal(&toKeep); |
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181 } |
| 790 | 182 |
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183 // WARNING: This function handles the decoding of strings to UTF8 |
| 790 | 184 bool GetTagValue(std::string& value, |
| 185 const DicomTag& tag); | |
| 186 | |
| 187 DicomInstanceHasher GetHasher(); | |
| 188 | |
| 189 void SaveToMemoryBuffer(std::string& buffer); | |
| 190 | |
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191 #if ORTHANC_SANDBOXED == 0 |
| 790 | 192 void SaveToFile(const std::string& path); |
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193 #endif |
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194 |
| 1562 | 195 void EmbedContent(const std::string& dataUriScheme); |
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196 |
| 1562 | 197 void EmbedImage(const ImageAccessor& accessor); |
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198 |
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199 void EmbedImage(MimeType mime, |
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200 const std::string& content); |
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201 |
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202 Encoding DetectEncoding(bool& hasCodeExtensions) const; |
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203 |
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204 // WARNING: This function only sets the encoding, it will not |
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205 // convert the encoding of the tags. Use "ChangeEncoding()" if need be. |
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206 void SetEncoding(Encoding encoding); |
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207 |
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208 void DatasetToJson(Json::Value& target, |
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209 DicomToJsonFormat format, |
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210 DicomToJsonFlags flags, |
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211 unsigned int maxStringLength); |
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212 |
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213 void DatasetToJson(Json::Value& target, |
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214 DicomToJsonFormat format, |
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215 DicomToJsonFlags flags, |
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216 unsigned int maxStringLength, |
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217 const std::set<DicomTag>& ignoreTagLength); |
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218 |
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219 // This version uses the default parameters for |
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220 // FileContentType_DicomAsJson |
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221 void DatasetToJson(Json::Value& target, |
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222 const std::set<DicomTag>& ignoreTagLength); |
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223 |
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224 void DatasetToJson(Json::Value& target); |
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225 |
|
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226 void HeaderToJson(Json::Value& target, |
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227 DicomToJsonFormat format); |
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228 |
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229 bool HasTag(const DicomTag& tag) const; |
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230 |
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231 void EmbedPdf(const std::string& pdf); |
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232 |
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233 bool ExtractPdf(std::string& pdf); |
|
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234 |
|
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235 void GetRawFrame(std::string& target, // OUT |
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236 MimeType& mime, // OUT |
|
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237 unsigned int frameId); // IN |
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238 |
|
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239 unsigned int GetFramesCount() const; |
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240 |
|
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241 static ParsedDicomFile* CreateFromJson(const Json::Value& value, |
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242 DicomFromJsonFlags flags, |
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243 const std::string& privateCreator); |
|
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244 |
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245 void ChangeEncoding(Encoding target); |
|
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246 |
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247 void ExtractDicomSummary(DicomMap& target) const; |
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248 |
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249 void ExtractDicomSummary(DicomMap& target, |
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250 const std::set<DicomTag>& ignoreTagLength) const; |
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251 |
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252 bool LookupTransferSyntax(std::string& result); |
|
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253 |
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254 bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const; |
|
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255 |
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256 void Apply(ITagVisitor& visitor); |
| 790 | 257 }; |
| 258 } |