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annotate OrthancFramework/Sources/DicomParsing/DicomModification.cpp @ 5130:f2dcdbe05884

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ResourceModification jobs can now use multiple threads
author Alain Mazy <am@osimis.io>
date Thu, 05 Jan 2023 17:24:43 +0100
parents 8638522eeda1
children 482f3e80ed0a
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "../PrecompiledHeaders.h"
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25 #include "DicomModification.h"
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26
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27 #include "../Compatibility.h"
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28 #include "../Logging.h"
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29 #include "../OrthancException.h"
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30 #include "../SerializationToolbox.h"
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31 #include "FromDcmtkBridge.h"
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32 #include "ITagVisitor.h"
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33
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34 #include <memory> // For std::unique_ptr
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35
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36
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37 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2008 =
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38 "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1";
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39
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40 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2017c =
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41 "Orthanc " ORTHANC_VERSION " - PS 3.15-2017c Table E.1-1 Basic Profile";
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42
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43 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2021b =
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44 "Orthanc " ORTHANC_VERSION " - PS 3.15-2021b Table E.1-1 Basic Profile";
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45
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46 namespace Orthanc
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47 {
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48 namespace
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49 {
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50 enum TagOperation
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51 {
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52 TagOperation_Keep,
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53 TagOperation_Remove
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54 };
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55 }
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56
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57
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58 DicomModification::DicomTagRange::DicomTagRange(uint16_t groupFrom,
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59 uint16_t groupTo,
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60 uint16_t elementFrom,
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61 uint16_t elementTo) :
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62 groupFrom_(groupFrom),
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63 groupTo_(groupTo),
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64 elementFrom_(elementFrom),
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65 elementTo_(elementTo)
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66 {
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67 }
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68
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69
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70 bool DicomModification::DicomTagRange::Contains(const DicomTag& tag) const
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71 {
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72 return (tag.GetGroup() >= groupFrom_ &&
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73 tag.GetGroup() <= groupTo_ &&
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74 tag.GetElement() >= elementFrom_ &&
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75 tag.GetElement() <= elementTo_);
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76 }
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78
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79 class DicomModification::RelationshipsVisitor : public ITagVisitor
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80 {
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81 private:
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82 DicomModification& that_;
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83
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84 // This method is only applicable to first-level tags
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85 bool IsManuallyModified(const DicomTag& tag) const
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86 {
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87 return (that_.IsCleared(tag) ||
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88 that_.IsRemoved(tag) ||
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89 that_.IsReplaced(tag));
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90 }
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91
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92 bool IsKeptSequence(const std::vector<DicomTag>& parentTags,
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93 const std::vector<size_t>& parentIndexes,
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94 const DicomTag& tag)
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95 {
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96 for (DicomModification::ListOfPaths::const_iterator
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97 it = that_.keepSequences_.begin(); it != that_.keepSequences_.end(); ++it)
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98 {
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99 if (DicomPath::IsMatch(*it, parentTags, parentIndexes, tag))
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100 {
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101 return true;
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102 }
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103 }
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104
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105 return false;
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106 }
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107
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108 Action GetDefaultAction(const std::vector<DicomTag>& parentTags,
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109 const std::vector<size_t>& parentIndexes,
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110 const DicomTag& tag)
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111 {
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112 if (parentTags.empty() ||
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113 !that_.isAnonymization_)
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114 {
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115 // Don't interfere with first-level tags or with modification
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116 return Action_None;
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117 }
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118 else if (IsKeptSequence(parentTags, parentIndexes, tag))
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119 {
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120 return Action_None;
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121 }
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122 else if (that_.ArePrivateTagsRemoved() &&
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123 tag.IsPrivate())
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124 {
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125 // New in Orthanc 1.9.5
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126 // https://groups.google.com/g/orthanc-users/c/l1mcYCC2u-k/m/jOdGYuagAgAJ
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127 return Action_Remove;
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128 }
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129 else if (that_.IsCleared(tag) ||
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130 that_.IsRemoved(tag))
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131 {
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132 // New in Orthanc 1.9.5
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133 // https://groups.google.com/g/orthanc-users/c/l1mcYCC2u-k/m/jOdGYuagAgAJ
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134 return Action_Remove;
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135 }
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136 else
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137 {
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138 return Action_None;
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139 }
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140 }
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141
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142 public:
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143 explicit RelationshipsVisitor(DicomModification& that) :
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144 that_(that)
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145 {
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146 }
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147
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148 virtual Action VisitNotSupported(const std::vector<DicomTag>& parentTags,
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149 const std::vector<size_t>& parentIndexes,
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150 const DicomTag& tag,
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151 ValueRepresentation vr) ORTHANC_OVERRIDE
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152 {
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153 return GetDefaultAction(parentTags, parentIndexes, tag);
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154 }
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155
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156 virtual Action VisitSequence(const std::vector<DicomTag>& parentTags,
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157 const std::vector<size_t>& parentIndexes,
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158 const DicomTag& tag,
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159 size_t countItems) ORTHANC_OVERRIDE
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160 {
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161 return GetDefaultAction(parentTags, parentIndexes, tag);
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162 }
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163
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164 virtual Action VisitBinary(const std::vector<DicomTag>& parentTags,
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165 const std::vector<size_t>& parentIndexes,
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166 const DicomTag& tag,
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167 ValueRepresentation vr,
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168 const void* data,
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169 size_t size) ORTHANC_OVERRIDE
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170 {
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171 return GetDefaultAction(parentTags, parentIndexes, tag);
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172 }
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173
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174 virtual Action VisitIntegers(const std::vector<DicomTag>& parentTags,
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175 const std::vector<size_t>& parentIndexes,
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176 const DicomTag& tag,
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177 ValueRepresentation vr,
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178 const std::vector<int64_t>& values) ORTHANC_OVERRIDE
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179 {
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180 return GetDefaultAction(parentTags, parentIndexes, tag);
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181 }
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182
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183 virtual Action VisitDoubles(const std::vector<DicomTag>& parentTags,
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184 const std::vector<size_t>& parentIndexes,
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185 const DicomTag& tag,
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186 ValueRepresentation vr,
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187 const std::vector<double>& value) ORTHANC_OVERRIDE
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188 {
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189 return GetDefaultAction(parentTags, parentIndexes, tag);
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190 }
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191
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192 virtual Action VisitAttributes(const std::vector<DicomTag>& parentTags,
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193 const std::vector<size_t>& parentIndexes,
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194 const DicomTag& tag,
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195 const std::vector<DicomTag>& value) ORTHANC_OVERRIDE
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196 {
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197 return GetDefaultAction(parentTags, parentIndexes, tag);
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198 }
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199
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200 virtual Action VisitString(std::string& newValue,
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201 const std::vector<DicomTag>& parentTags,
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202 const std::vector<size_t>& parentIndexes,
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203 const DicomTag& tag,
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204 ValueRepresentation vr,
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205 const std::string& value) ORTHANC_OVERRIDE
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206 {
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207 /**
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208 * Note that all the tags in "uids_" have the VR UI (unique
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209 * identifier), and are considered as strings.
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210 *
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211 * Also, the tags "SOP Instance UID", "Series Instance UID" and
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212 * "Study Instance UID" are *never* included in "uids_", as they
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213 * are separately handed by "MapDicomTags()".
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214 **/
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215
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216 assert(that_.uids_.find(DICOM_TAG_STUDY_INSTANCE_UID) == that_.uids_.end());
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217 assert(that_.uids_.find(DICOM_TAG_SERIES_INSTANCE_UID) == that_.uids_.end());
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218 assert(that_.uids_.find(DICOM_TAG_SOP_INSTANCE_UID) == that_.uids_.end());
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219
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220 if (parentTags.empty())
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221 {
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222 // We are on a first-level tag
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223 if (that_.uids_.find(tag) != that_.uids_.end() &&
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224 !IsManuallyModified(tag))
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225 {
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226 if (tag == DICOM_TAG_PATIENT_ID ||
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227 tag == DICOM_TAG_PATIENT_NAME)
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228 {
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229 assert(vr == ValueRepresentation_LongString ||
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230 vr == ValueRepresentation_PersonName);
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231 newValue = that_.MapDicomIdentifier(value, ResourceType_Patient);
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232 }
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233 else
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234 {
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235 // This is a first-level UID tag that must be anonymized
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236 assert(vr == ValueRepresentation_UniqueIdentifier ||
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237 vr == ValueRepresentation_NotSupported /* for older versions of DCMTK */);
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238 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance);
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239 }
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240
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241 return Action_Replace;
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242 }
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243 else
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244 {
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245 return Action_None;
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246 }
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247 }
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248 else
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249 {
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250 // We are within a sequence
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251
4737
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252 if (IsKeptSequence(parentTags, parentIndexes, tag))
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253 {
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254 // New in Orthanc 1.9.4 - Solves issue LSD-629
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255 return Action_None;
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256 }
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257
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258 if (that_.isAnonymization_)
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259 {
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260 // New in Orthanc 1.9.5, similar to "GetDefaultAction()"
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261 // https://groups.google.com/g/orthanc-users/c/l1mcYCC2u-k/m/jOdGYuagAgAJ
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262 if (that_.ArePrivateTagsRemoved() &&
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263 tag.IsPrivate())
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264 {
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265 return Action_Remove;
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266 }
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267 else if (that_.IsRemoved(tag))
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268 {
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269 return Action_Remove;
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270 }
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271 else if (that_.IsCleared(tag))
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272 {
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273 // This is different from "GetDefaultAction()", because we know how to clear string tags
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274 newValue.clear();
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275 return Action_Replace;
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276 }
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277 }
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278
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279 if (tag == DICOM_TAG_STUDY_INSTANCE_UID)
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280 {
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281 newValue = that_.MapDicomIdentifier(value, ResourceType_Study);
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282 return Action_Replace;
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283 }
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284 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID)
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285 {
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286 newValue = that_.MapDicomIdentifier(value, ResourceType_Series);
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287 return Action_Replace;
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288 }
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289 else if (tag == DICOM_TAG_SOP_INSTANCE_UID)
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290 {
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291 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance);
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292 return Action_Replace;
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293 }
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294 else if (that_.uids_.find(tag) != that_.uids_.end())
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295 {
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296 if (tag == DICOM_TAG_PATIENT_ID ||
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297 tag == DICOM_TAG_PATIENT_NAME)
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298 {
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299 newValue = that_.MapDicomIdentifier(value, ResourceType_Patient);
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300 }
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301 else
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parents: 4678
diff changeset
302 {
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303 assert(vr == ValueRepresentation_UniqueIdentifier ||
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304 vr == ValueRepresentation_NotSupported /* for older versions of DCMTK */);
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305
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306 if (parentTags.size() == 2 &&
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diff changeset
307 parentTags[0] == DICOM_TAG_REFERENCED_FRAME_OF_REFERENCE_SEQUENCE &&
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diff changeset
308 parentTags[1] == DICOM_TAG_RT_REFERENCED_STUDY_SEQUENCE &&
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diff changeset
309 tag == DICOM_TAG_REFERENCED_SOP_INSTANCE_UID)
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diff changeset
310 {
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311 /**
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312 * In RT-STRUCT, this ReferencedSOPInstanceUID is actually
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313 * referencing a StudyInstanceUID !! (observed in many
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314 * data sets including:
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315 * https://wiki.cancerimagingarchive.net/display/Public/Lung+CT+Segmentation+Challenge+2017)
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316 * Tested in "test_anonymize_relationships_5". Introduced
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317 * in: https://hg.orthanc-server.com/orthanc/rev/3513
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318 **/
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319 newValue = that_.MapDicomIdentifier(value, ResourceType_Study);
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320 }
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321 else
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diff changeset
322 {
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323 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance);
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diff changeset
324 }
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325 }
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diff changeset
326
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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327 return Action_Replace;
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parents: 4678
diff changeset
328 }
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parents: 4678
diff changeset
329 else
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parents: 4678
diff changeset
330 {
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
331 return Action_None;
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parents: 4678
diff changeset
332 }
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
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diff changeset
333 }
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parents: 2447
diff changeset
334 }
51b91ead6c38 Preservation of UID relationships while anonymizing
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parents: 2447
diff changeset
335
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diff changeset
336 void RemoveRelationships(ParsedDicomFile& dicom) const
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diff changeset
337 {
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diff changeset
338 for (SetOfTags::const_iterator it = that_.uids_.begin(); it != that_.uids_.end(); ++it)
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diff changeset
339 {
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diff changeset
340 assert(*it != DICOM_TAG_STUDY_INSTANCE_UID &&
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341 *it != DICOM_TAG_SERIES_INSTANCE_UID &&
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342 *it != DICOM_TAG_SOP_INSTANCE_UID);
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diff changeset
343
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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diff changeset
344 if (!IsManuallyModified(*it))
4678
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345 {
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346 dicom.Remove(*it);
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347 }
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diff changeset
348 }
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diff changeset
349
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diff changeset
350 // The only two sequences with to the "X/Z/U*" rule in the
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351 // basic profile. They were already present in Orthanc 1.9.3.
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diff changeset
352 if (!IsManuallyModified(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE))
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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diff changeset
353 {
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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diff changeset
354 dicom.Remove(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE);
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diff changeset
355 }
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parents: 4678
diff changeset
356
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
357 if (!IsManuallyModified(DICOM_TAG_SOURCE_IMAGE_SEQUENCE))
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diff changeset
358 {
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diff changeset
359 dicom.Remove(DICOM_TAG_SOURCE_IMAGE_SEQUENCE);
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diff changeset
360 }
2506
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diff changeset
361 }
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diff changeset
362 };
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parents: 2447
diff changeset
363
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parents: 2447
diff changeset
364
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diff changeset
365 void DicomModification::CancelReplacement(const DicomTag& tag)
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parents: 1695
diff changeset
366 {
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diff changeset
367 Replacements::iterator it = replacements_.find(tag);
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parents: 2321
diff changeset
368
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parents: 1695
diff changeset
369 if (it != replacements_.end())
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
370 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
371 assert(it->second != NULL);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
372 delete it->second;
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
373 replacements_.erase(it);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
374 }
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
375 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
376
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
377
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
378 void DicomModification::ReplaceInternal(const DicomTag& tag,
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
379 const Json::Value& value)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
380 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
381 Replacements::iterator it = replacements_.find(tag);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
382
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
383 if (it != replacements_.end())
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
384 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
385 assert(it->second != NULL);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
386 delete it->second;
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
387 it->second = NULL; // In the case of an exception during the clone
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
388 it->second = new Json::Value(value); // Clone
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
389 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
390 else
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
391 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
392 replacements_[tag] = new Json::Value(value); // Clone
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
393 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
394 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
395
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
396
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
397 void DicomModification::ClearReplacements()
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
398 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
399 for (Replacements::iterator it = replacements_.begin();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
400 it != replacements_.end(); ++it)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
401 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
402 assert(it->second != NULL);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
403 delete it->second;
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
404 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
405
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
406 replacements_.clear();
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
407
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
408 for (SequenceReplacements::iterator it = sequenceReplacements_.begin();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
409 it != sequenceReplacements_.end(); ++it)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
410 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
411 assert(*it != NULL);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
412 assert((*it)->GetPath().GetPrefixLength() > 0);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
413 delete *it;
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
414 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
415
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
416 sequenceReplacements_.clear();
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
417 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
418
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
419
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
420 void DicomModification::MarkNotOrthancAnonymization()
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
421 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
422 Replacements::iterator it = replacements_.find(DICOM_TAG_DEIDENTIFICATION_METHOD);
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
423
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
424 if (it != replacements_.end())
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
425 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
426 assert(it->second != NULL);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
427
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
428 if (it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2008 ||
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
429 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2017c ||
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
430 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2021b)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
431 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
432 delete it->second;
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
433 replacements_.erase(it);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
434 }
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
435 }
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
436 }
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
437
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
438 void DicomModification::RegisterMappedDicomIdentifier(const std::string& original,
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
439 const std::string& mapped,
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
440 ResourceType level)
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
441 {
5130
f2dcdbe05884 ResourceModification jobs can now use multiple threads
Alain Mazy <am@osimis.io>
parents: 5122
diff changeset
442 boost::recursive_mutex::scoped_lock lock(uidMapMutex_);
f2dcdbe05884 ResourceModification jobs can now use multiple threads
Alain Mazy <am@osimis.io>
parents: 5122
diff changeset
443
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
444 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, original));
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
445
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
446 if (previous == uidMap_.end())
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
447 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
448 uidMap_.insert(std::make_pair(std::make_pair(level, original), mapped));
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
449 }
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
450 }
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
451
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
452 std::string DicomModification::MapDicomIdentifier(const std::string& original,
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
453 ResourceType level)
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
454 {
5130
f2dcdbe05884 ResourceModification jobs can now use multiple threads
Alain Mazy <am@osimis.io>
parents: 5122
diff changeset
455 boost::recursive_mutex::scoped_lock lock(uidMapMutex_);
f2dcdbe05884 ResourceModification jobs can now use multiple threads
Alain Mazy <am@osimis.io>
parents: 5122
diff changeset
456
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
457 const std::string stripped = Toolbox::StripSpaces(original);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
458
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
459 std::string mapped;
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
460
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
461 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, stripped));
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
462
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
463 if (previous == uidMap_.end())
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
464 {
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
465 if (identifierGenerator_ == NULL)
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
466 {
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
467 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level);
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
468 }
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
469 else
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
470 {
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
471 if (!identifierGenerator_->Apply(mapped, stripped, level, currentSource_))
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
472 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
473 throw OrthancException(ErrorCode_InternalError,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
474 "Unable to generate an anonymized ID");
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
475 }
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
476 }
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
477
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
478 uidMap_.insert(std::make_pair(std::make_pair(level, stripped), mapped));
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
479 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
480 else
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
481 {
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
482 mapped = previous->second;
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
483 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
484
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
485 return mapped;
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
486 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
487
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
488
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
489 void DicomModification::MapDicomTags(ParsedDicomFile& dicom,
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
490 ResourceType level)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
492 std::unique_ptr<DicomTag> tag;
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 switch (level)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 {
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
496 case ResourceType_Study:
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 break;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
500 case ResourceType_Series:
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502 break;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
504 case ResourceType_Instance:
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 tag.reset(new DicomTag(DICOM_TAG_SOP_INSTANCE_UID));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 break;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508 default:
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509 throw OrthancException(ErrorCode_InternalError);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512 std::string original;
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
513 if (!const_cast<const ParsedDicomFile&>(dicom).GetTagValue(original, *tag))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
514 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
515 original = "";
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
516 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
517
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
518 std::string mapped = MapDicomIdentifier(original, level);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
520 dicom.Replace(*tag, mapped,
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
521 false /* don't try and decode data URI scheme for UIDs */,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
522 DicomReplaceMode_InsertIfAbsent, privateCreator_);
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
523 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
525
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
526 DicomModification::DicomModification() :
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
527 removePrivateTags_(false),
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
528 level_(ResourceType_Instance),
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
529 allowManualIdentifiers_(true),
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
530 keepStudyInstanceUid_(false),
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
531 keepSeriesInstanceUid_(false),
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
532 keepSopInstanceUid_(false),
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
533 updateReferencedRelationships_(true),
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
534 isAnonymization_(false),
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
535 //privateCreator_("PrivateCreator"),
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
536 identifierGenerator_(NULL)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
537 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
538 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
539
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
540 DicomModification::~DicomModification()
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
541 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
542 ClearReplacements();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
543 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
544
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
545 void DicomModification::Keep(const DicomTag& tag)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
546 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
547 removals_.erase(tag);
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
548 clearings_.erase(tag);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
549 uids_.erase(tag);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
550
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
551 CancelReplacement(tag);
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
552
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
553 if (tag == DICOM_TAG_STUDY_INSTANCE_UID)
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
554 {
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
555 keepStudyInstanceUid_ = true;
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
556 }
2321
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
557 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID)
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
558 {
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
559 keepSeriesInstanceUid_ = true;
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
560 }
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
561 else if (tag == DICOM_TAG_SOP_INSTANCE_UID)
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
562 {
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
563 keepSopInstanceUid_ = true;
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
564 }
2321
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
565 else if (tag.IsPrivate())
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
566 {
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
567 privateTagsToKeep_.insert(tag);
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
568 }
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
569
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
570 MarkNotOrthancAnonymization();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
571 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
572
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
573 void DicomModification::Remove(const DicomTag& tag)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
574 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
575 removals_.insert(tag);
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
576 clearings_.erase(tag);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
577 uids_.erase(tag);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
578 CancelReplacement(tag);
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
579 privateTagsToKeep_.erase(tag);
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
580
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
581 MarkNotOrthancAnonymization();
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
582 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
583
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
584 void DicomModification::Clear(const DicomTag& tag)
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
585 {
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
586 removals_.erase(tag);
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
587 clearings_.insert(tag);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
588 uids_.erase(tag);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
589 CancelReplacement(tag);
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
590 privateTagsToKeep_.erase(tag);
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
591
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
592 MarkNotOrthancAnonymization();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
593 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
594
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
595 bool DicomModification::IsRemoved(const DicomTag& tag) const
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
596 {
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
597 if (removals_.find(tag) != removals_.end())
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
598 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
599 return true;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
600 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
601 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
602 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
603 for (RemovedRanges::const_iterator it = removedRanges_.begin();
4690
13efc0967cea cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4688
diff changeset
604 it != removedRanges_.end(); ++it)
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
605 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
606 if (it->Contains(tag))
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
607 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
608 return true;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
609 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
610 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
611
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
612 return false;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
613 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
614 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
615
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
616 bool DicomModification::IsCleared(const DicomTag& tag) const
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
617 {
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
618 return clearings_.find(tag) != clearings_.end();
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
619 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
620
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
621 void DicomModification::Replace(const DicomTag& tag,
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
622 const Json::Value& value,
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
623 bool safeForAnonymization)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
624 {
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
625 clearings_.erase(tag);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
626 removals_.erase(tag);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
627 uids_.erase(tag);
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
628 privateTagsToKeep_.erase(tag);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
629 ReplaceInternal(tag, value);
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
630
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
631 if (!safeForAnonymization)
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
632 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
633 MarkNotOrthancAnonymization();
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
634 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
635 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
636
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
637
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
638 bool DicomModification::IsReplaced(const DicomTag& tag) const
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
639 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
640 return replacements_.find(tag) != replacements_.end();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
641 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
642
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
643 const Json::Value& DicomModification::GetReplacement(const DicomTag& tag) const
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
644 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
645 Replacements::const_iterator it = replacements_.find(tag);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
646
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
647 if (it == replacements_.end())
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
648 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
649 throw OrthancException(ErrorCode_InexistentItem);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
650 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
651 else
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
652 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
653 assert(it->second != NULL);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
654 return *it->second;
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
655 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
656 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
657
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
658
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
659 std::string DicomModification::GetReplacementAsString(const DicomTag& tag) const
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
660 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
661 const Json::Value& json = GetReplacement(tag);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
662
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
663 if (json.type() != Json::stringValue)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
664 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
665 throw OrthancException(ErrorCode_BadParameterType);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
666 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
667 else
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
668 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
669 return json.asString();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
670 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
671 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
672
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
673
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
674 void DicomModification::SetRemovePrivateTags(bool removed)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
675 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
676 removePrivateTags_ = removed;
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
677
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
678 if (!removed)
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
679 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
680 MarkNotOrthancAnonymization();
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
681 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
682 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
683
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
684 bool DicomModification::ArePrivateTagsRemoved() const
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
685 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
686 return removePrivateTags_;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
687 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
688
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
689 void DicomModification::SetLevel(ResourceType level)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
690 {
5130
f2dcdbe05884 ResourceModification jobs can now use multiple threads
Alain Mazy <am@osimis.io>
parents: 5122
diff changeset
691 boost::recursive_mutex::scoped_lock lock(uidMapMutex_);
f2dcdbe05884 ResourceModification jobs can now use multiple threads
Alain Mazy <am@osimis.io>
parents: 5122
diff changeset
692
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
693 uidMap_.clear();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
694 level_ = level;
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
695
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
696 if (level != ResourceType_Patient)
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
697 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
698 MarkNotOrthancAnonymization();
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
699 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
700 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
701
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
702 ResourceType DicomModification::GetLevel() const
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
703 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
704 return level_;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
705 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
706
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
707
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
708 static void SetupUidsFromOrthancInternal(std::set<DicomTag>& uids,
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
709 std::set<DicomTag>& removals,
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
710 const DicomTag& tag)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
711 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
712 uids.insert(tag);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
713 removals.erase(tag); // Necessary if unserializing a job from 1.9.3
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
714 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
715
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
716
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
717 void DicomModification::SetupUidsFromOrthanc_1_9_3()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
718 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
719 /**
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
720 * Values below come from the hardcoded UID of Orthanc 1.9.3
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
721 * in DicomModification::RelationshipsVisitor::VisitString() and
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
722 * DicomModification::RelationshipsVisitor::RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
723 * https://hg.orthanc-server.com/orthanc/file/Orthanc-1.9.3/OrthancFramework/Sources/DicomParsing/DicomModification.cpp#l117
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
724 **/
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
725 uids_.clear();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
726
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
727 // (*) "PatientID" and "PatientName" are handled as UIDs since Orthanc 1.9.4
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
728 uids_.insert(DICOM_TAG_PATIENT_ID);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
729 uids_.insert(DICOM_TAG_PATIENT_NAME);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
730
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
731 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0008, 0x0014)); // Instance Creator UID <= from SetupAnonymization2008()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
732 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID <= from VisitString() + RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
733 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0020, 0x0052)); // Frame of Reference UID <= from VisitString() + RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
734 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID <= from SetupAnonymization2008()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
735 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0040, 0xa124)); // UID <= from SetupAnonymization2008()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
736 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0088, 0x0140)); // Storage Media File-set UID <= from SetupAnonymization2008()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
737 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID <= from VisitString() + RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
738 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID <= from VisitString() + RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
739 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
740
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
741
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
742 void DicomModification::SetupAnonymization2008()
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
743 {
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
744 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
745 // https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
746
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
747 SetupUidsFromOrthanc_1_9_3();
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
748
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
749 //uids_.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID => set in SetupUidsFromOrthanc_1_9_3()
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
750 //removals_.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set in Apply()
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
751 removals_.insert(DicomTag(0x0008, 0x0050)); // Accession Number
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
752 removals_.insert(DicomTag(0x0008, 0x0080)); // Institution Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
753 removals_.insert(DicomTag(0x0008, 0x0081)); // Institution Address
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
754 removals_.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
755 removals_.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
756 removals_.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
757 removals_.insert(DicomTag(0x0008, 0x1010)); // Station Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
758 removals_.insert(DicomTag(0x0008, 0x1030)); // Study Description
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
759 removals_.insert(DicomTag(0x0008, 0x103e)); // Series Description
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
760 removals_.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
761 removals_.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
762 removals_.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
763 removals_.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
764 removals_.insert(DicomTag(0x0008, 0x1070)); // Operators' Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
765 removals_.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
766 //uids_.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID => set in SetupUidsFromOrthanc_1_9_3()
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
767 removals_.insert(DicomTag(0x0008, 0x2111)); // Derivation Description
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
768 //removals_.insert(DicomTag(0x0010, 0x0010)); // Patient's Name => cf. below (*)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
769 //removals_.insert(DicomTag(0x0010, 0x0020)); // Patient ID => cf. below (*)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
770 removals_.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
771 removals_.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
772 removals_.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
773 removals_.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
774 removals_.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
775 removals_.insert(DicomTag(0x0010, 0x1010)); // Patient's Age
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
776 removals_.insert(DicomTag(0x0010, 0x1020)); // Patient's Size
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
777 removals_.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
778 removals_.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
779 removals_.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
780 removals_.insert(DicomTag(0x0010, 0x2180)); // Occupation
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
781 removals_.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
782 removals_.insert(DicomTag(0x0010, 0x4000)); // Patient Comments
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
783 removals_.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
784 removals_.insert(DicomTag(0x0018, 0x1030)); // Protocol Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
785 //removals_.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => set in Apply()
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
786 //removals_.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => set in Apply()
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
787 removals_.insert(DicomTag(0x0020, 0x0010)); // Study ID
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
788 //uids_.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
789 //uids_.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3()
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
790 removals_.insert(DicomTag(0x0020, 0x4000)); // Image Comments
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
791 removals_.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
792 //uids_.insert(DicomTag(0x0040, 0xa124)); // UID => set in SetupUidsFromOrthanc_1_9_3()
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
793 removals_.insert(DicomTag(0x0040, 0xa730)); // Content Sequence
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
794 //uids_.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID => set in SetupUidsFromOrthanc_1_9_3()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
795 //uids_.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
796 //uids_.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3()
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
797
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
798 // Some more removals (from the experience of DICOM files at the CHU of Liege)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
799 removals_.insert(DicomTag(0x0010, 0x1040)); // Patient's Address
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
800 removals_.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
801 removals_.insert(DicomTag(0x0010, 0x2154)); // PatientTelephoneNumbers
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
802 removals_.insert(DicomTag(0x0010, 0x2000)); // Medical Alerts
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
803
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
804 // Set the DeidentificationMethod tag
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
805 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2008);
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
806 }
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
807
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
808
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
809 void DicomModification::SetupAnonymization2017c()
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
810 {
2313
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
811 /**
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
812 * This is Table E.1-1 from PS 3.15-2017c (DICOM Part 15: Security
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
813 * and System Management Profiles), "basic profile" column. It was
4675
7e4d1f2b3a8f GenerateAnonymizationProfile.py can read from URL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
814 * generated automatically by calling:
7e4d1f2b3a8f GenerateAnonymizationProfile.py can read from URL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
815 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py
7e4d1f2b3a8f GenerateAnonymizationProfile.py can read from URL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
816 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2017c/part15.xml"
2313
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
817 **/
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
818
4676
caf963ee3de9 DicomModification_Anonymization2017c.impl.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4675
diff changeset
819 #include "DicomModification_Anonymization2017c.impl.h"
2313
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
820
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
821 // Set the DeidentificationMethod tag
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
822 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2017c);
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
823 }
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
824
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
825
4677
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
826 void DicomModification::SetupAnonymization2021b()
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
827 {
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
828 /**
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
829 * This is Table E.1-1 from PS 3.15-2021b (DICOM Part 15: Security
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
830 * and System Management Profiles), "basic profile" column. It was
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
831 * generated automatically by calling:
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
832 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
833 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2021b/part15.xml"
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
834 *
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
835 * http://dicom.nema.org/medical/dicom/2021b/output/chtml/part15/chapter_E.html#table_E.1-1a
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
836 * http://dicom.nema.org/medical/dicom/2021b/output/chtml/part15/chapter_E.html#table_E.1-1
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
837 **/
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
838
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
839 #include "DicomModification_Anonymization2021b.impl.h"
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
840
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
841 // Set the DeidentificationMethod tag
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
842 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2021b);
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
843 }
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
844
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
845
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
846 void DicomModification::SetupAnonymization(DicomVersion version)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
847 {
5130
f2dcdbe05884 ResourceModification jobs can now use multiple threads
Alain Mazy <am@osimis.io>
parents: 5122
diff changeset
848 boost::recursive_mutex::scoped_lock lock(uidMapMutex_);
f2dcdbe05884 ResourceModification jobs can now use multiple threads
Alain Mazy <am@osimis.io>
parents: 5122
diff changeset
849
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
850 isAnonymization_ = true;
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
851
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
852 removals_.clear();
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
853 clearings_.clear();
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
854 removedRanges_.clear();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
855 uids_.clear();
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
856 ClearReplacements();
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
857 removePrivateTags_ = true;
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
858 level_ = ResourceType_Patient;
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
859 uidMap_.clear();
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
860 privateTagsToKeep_.clear();
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
861 keepSequences_.clear();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
862 removeSequences_.clear();
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
863
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
864 switch (version)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
865 {
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
866 case DicomVersion_2008:
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
867 SetupAnonymization2008();
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
868 break;
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
869
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
870 case DicomVersion_2017c:
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
871 SetupAnonymization2017c();
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
872 break;
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
873
4677
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
874 case DicomVersion_2021b:
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
875 SetupAnonymization2021b();
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
876 break;
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
877
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
878 default:
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
879 throw OrthancException(ErrorCode_ParameterOutOfRange);
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
880 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
881
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
882 // Set the PatientIdentityRemoved tag
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
883 ReplaceInternal(DicomTag(0x0012, 0x0062), "YES");
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
884
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
885 // (*) Choose a random patient name and ID
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
886 uids_.insert(DICOM_TAG_PATIENT_ID);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
887 uids_.insert(DICOM_TAG_PATIENT_NAME);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
888
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
889 // Sanity check
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
890 for (SetOfTags::const_iterator it = uids_.begin(); it != uids_.end(); ++it)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
891 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
892 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(*it);
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
893 if (*it == DICOM_TAG_PATIENT_ID)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
894 {
4696
dd6274412ff4 new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
895 if (vr != ValueRepresentation_LongString &&
dd6274412ff4 new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
896 vr != ValueRepresentation_NotSupported /* if no dictionary loaded */)
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
897 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
898 throw OrthancException(ErrorCode_InternalError);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
899 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
900 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
901 else if (*it == DICOM_TAG_PATIENT_NAME)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
902 {
4696
dd6274412ff4 new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
903 if (vr != ValueRepresentation_PersonName &&
dd6274412ff4 new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
904 vr != ValueRepresentation_NotSupported /* if no dictionary loaded */)
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
905 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
906 throw OrthancException(ErrorCode_InternalError);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
907 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
908 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
909 else if (vr != ValueRepresentation_UniqueIdentifier &&
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
910 vr != ValueRepresentation_NotSupported /* for older versions of DCMTK */)
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
911 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
912 throw OrthancException(ErrorCode_InternalError);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
913 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
914 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
915 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
916
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
917 void DicomModification::Apply(ParsedDicomFile& toModify)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
918 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
919 // Check the request
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
920 assert(ResourceType_Patient + 1 == ResourceType_Study &&
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
921 ResourceType_Study + 1 == ResourceType_Series &&
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
922 ResourceType_Series + 1 == ResourceType_Instance);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
923
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
924 if (IsRemoved(DICOM_TAG_PATIENT_ID) ||
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
925 IsRemoved(DICOM_TAG_STUDY_INSTANCE_UID) ||
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
926 IsRemoved(DICOM_TAG_SERIES_INSTANCE_UID) ||
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
927 IsRemoved(DICOM_TAG_SOP_INSTANCE_UID))
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
928 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
929 throw OrthancException(ErrorCode_BadRequest);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
930 }
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
931
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
932
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
933 // Sanity checks at the patient level
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
934 if (!allowManualIdentifiers_)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
935 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
936 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
937 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
938 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
939 "When modifying a patient, the StudyInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
940 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
941
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
942 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
943 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
944 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
945 "When modifying a patient, the SeriesInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
946 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
947
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
948 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
949 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
950 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
951 "When modifying a patient, the SopInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
952 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
953 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
954
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
955
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
956 // Sanity checks at the study level
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
957 if (!allowManualIdentifiers_)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
958 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
959 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
960 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
961 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
962 "When modifying a study, the SeriesInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
963 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
964
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
965 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
966 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
967 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
968 "When modifying a study, the SopInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
969 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
970 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
971
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
972
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
973 // Sanity checks at the series level
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
974 if (!allowManualIdentifiers_)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
975 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
976 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
977 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
978 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
979 "When modifying a series, the SopInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
980 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
981 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
982
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
983
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
984 // (0) Create a summary of the source file, if a custom generator
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
985 // is provided
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
986 if (identifierGenerator_ != NULL)
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
987 {
4139
a4f28efdfccf "maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
988 toModify.ExtractDicomSummary(currentSource_, ORTHANC_MAXIMUM_TAG_LENGTH);
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
989 }
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
990
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
991 // (1) Make sure the relationships are updated with the ids that we force too
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
992 // i.e: an RT-STRUCT is referencing its own StudyInstanceUID
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
993 if (isAnonymization_ && updateReferencedRelationships_)
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
994 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
995 if (IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
996 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
997 std::string original;
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
998 std::string replacement = GetReplacementAsString(DICOM_TAG_STUDY_INSTANCE_UID);
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
999 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_STUDY_INSTANCE_UID);
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1000 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Study);
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1001 }
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1002
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1003 if (IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1004 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1005 std::string original;
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1006 std::string replacement = GetReplacementAsString(DICOM_TAG_SERIES_INSTANCE_UID);
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
1007 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SERIES_INSTANCE_UID);
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1008 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Series);
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1009 }
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1010
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1011 if (IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1012 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1013 std::string original;
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1014 std::string replacement = GetReplacementAsString(DICOM_TAG_SOP_INSTANCE_UID);
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
1015 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SOP_INSTANCE_UID);
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1016 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Instance);
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1017 }
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1018 }
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1019
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1020
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1021 // (2) Remove the private tags, if need be
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1022 if (removePrivateTags_)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1023 {
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
1024 toModify.RemovePrivateTags(privateTagsToKeep_);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1025 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1026
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1027 // (3) Clear the tags specified by the user
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
1028 for (SetOfTags::const_iterator it = clearings_.begin();
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
1029 it != clearings_.end(); ++it)
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
1030 {
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
1031 toModify.Clear(*it, true /* only clear if the tag exists in the original file */);
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
1032 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
1033
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1034 // (4) Remove the tags specified by the user
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
1035 for (SetOfTags::const_iterator it = removals_.begin();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1036 it != removals_.end(); ++it)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1037 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1038 toModify.Remove(*it);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1039 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1040
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1041 // (5) Replace the tags
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1042 for (Replacements::const_iterator it = replacements_.begin();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1043 it != replacements_.end(); ++it)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1044 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1045 assert(it->second != NULL);
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1046 toModify.Replace(it->first, *it->second, true /* decode data URI scheme */,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1047 DicomReplaceMode_InsertIfAbsent, privateCreator_);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1048 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1049
4691
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1050 // (6) Update the DICOM identifiers
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1051 if (level_ <= ResourceType_Study &&
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1052 !IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1053 {
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1054 if (keepStudyInstanceUid_)
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1055 {
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1056 LOG(WARNING) << "Modifying a study while keeping its original StudyInstanceUID: This should be avoided!";
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1057 }
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1058 else
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1059 {
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1060 MapDicomTags(toModify, ResourceType_Study);
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1061 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1062 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1063
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1064 if (level_ <= ResourceType_Series &&
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1065 !IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1066 {
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1067 if (keepSeriesInstanceUid_)
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1068 {
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1069 LOG(WARNING) << "Modifying a series while keeping its original SeriesInstanceUID: This should be avoided!";
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1070 }
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1071 else
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1072 {
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1073 MapDicomTags(toModify, ResourceType_Series);
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1074 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1075 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1076
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1077 if (level_ <= ResourceType_Instance && // Always true
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1078 !IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1079 {
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1080 if (keepSopInstanceUid_)
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1081 {
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1082 LOG(WARNING) << "Modifying an instance while keeping its original SOPInstanceUID: This should be avoided!";
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1083 }
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1084 else
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1085 {
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1086 MapDicomTags(toModify, ResourceType_Instance);
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1087 }
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1088 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1089
4691
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1090 // (7) Update the "referenced" relationships in the case of an anonymization
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
1091 if (isAnonymization_)
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1092 {
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1093 RelationshipsVisitor visitor(*this);
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1094
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1095 if (updateReferencedRelationships_)
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1096 {
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
1097 const_cast<const ParsedDicomFile&>(toModify).Apply(visitor);
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1098 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1099 else
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1100 {
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1101 visitor.RemoveRelationships(toModify);
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1102 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1103 }
4691
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1104
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1105 // (8) New in Orthanc 1.9.4: Apply modifications to subsequences
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1106 for (ListOfPaths::const_iterator it = removeSequences_.begin();
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1107 it != removeSequences_.end(); ++it)
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1108 {
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1109 assert(it->GetPrefixLength() > 0);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1110 toModify.RemovePath(*it);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1111 }
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1112
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1113 for (SequenceReplacements::const_iterator it = sequenceReplacements_.begin();
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1114 it != sequenceReplacements_.end(); ++it)
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1115 {
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1116 assert(*it != NULL);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1117 assert((*it)->GetPath().GetPrefixLength() > 0);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1118 toModify.ReplacePath((*it)->GetPath(), (*it)->GetValue(), true /* decode data URI scheme */,
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1119 DicomReplaceMode_InsertIfAbsent, privateCreator_);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1120 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1121 }
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1122
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1123 void DicomModification::SetAllowManualIdentifiers(bool check)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1124 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1125 allowManualIdentifiers_ = check;
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1126 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1127
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1128 bool DicomModification::AreAllowManualIdentifiers() const
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1129 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1130 return allowManualIdentifiers_;
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1131 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1132
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1133
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1134 static bool IsDatabaseKey(const DicomTag& tag)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1135 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1136 return (tag == DICOM_TAG_PATIENT_ID ||
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1137 tag == DICOM_TAG_STUDY_INSTANCE_UID ||
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1138 tag == DICOM_TAG_SERIES_INSTANCE_UID ||
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1139 tag == DICOM_TAG_SOP_INSTANCE_UID);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1140 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1141
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1142
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1143 static void ParseListOfTags(DicomModification& target,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1144 const Json::Value& query,
4737
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4734
diff changeset
1145 TagOperation operation,
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1146 bool force)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1147 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1148 if (!query.isArray())
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1149 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1150 throw OrthancException(ErrorCode_BadRequest);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1151 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1152
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1153 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1154 {
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1155 if (query[i].type() != Json::stringValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1156 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1157 throw OrthancException(ErrorCode_BadRequest);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1158 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1159
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1160 std::string name = query[i].asString();
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1161
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1162 const DicomPath path(DicomPath::Parse(name));
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1163
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1164 if (path.GetPrefixLength() == 0 &&
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1165 !force &&
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1166 IsDatabaseKey(path.GetFinalTag()))
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1167 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1168 throw OrthancException(ErrorCode_BadRequest,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1169 "Marking tag \"" + name + "\" as to be " +
4737
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4734
diff changeset
1170 (operation == TagOperation_Keep ? "kept" : "removed") +
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1171 " requires the \"Force\" option to be set to true");
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1172 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1173
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1174 switch (operation)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1175 {
4737
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4734
diff changeset
1176 case TagOperation_Keep:
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1177 target.Keep(path);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1178 LOG(TRACE) << "Keep: " << name << " = " << path.Format();
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1179 break;
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1180
4737
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4734
diff changeset
1181 case TagOperation_Remove:
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1182 target.Remove(path);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1183 LOG(TRACE) << "Remove: " << name << " = " << path.Format();
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1184 break;
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1185
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1186 default:
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1187 throw OrthancException(ErrorCode_InternalError);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1188 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1189 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1190 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1191
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1192
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1193 static void ParseReplacements(DicomModification& target,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1194 const Json::Value& replacements,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1195 bool force)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1196 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1197 if (!replacements.isObject())
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1198 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1199 throw OrthancException(ErrorCode_BadRequest);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1200 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1201
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1202 Json::Value::Members members = replacements.getMemberNames();
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1203 for (size_t i = 0; i < members.size(); i++)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1204 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1205 const std::string& name = members[i];
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1206 const Json::Value& value = replacements[name];
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1207
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1208 const DicomPath path(DicomPath::Parse(name));
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1209
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1210 if (path.GetPrefixLength() == 0 &&
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1211 !force &&
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1212 IsDatabaseKey(path.GetFinalTag()))
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1213 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1214 throw OrthancException(ErrorCode_BadRequest,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1215 "Marking tag \"" + name + "\" as to be replaced " +
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1216 "requires the \"Force\" option to be set to true");
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1217 }
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1218
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1219 target.Replace(path, value, false /* not safe for anonymization */);
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1220
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1221 LOG(TRACE) << "Replace: " << name << " = " << path.Format()
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1222 << " by: " << value.toStyledString();
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1223 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1224 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1225
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1226
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1227 static bool GetBooleanValue(const std::string& member,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1228 const Json::Value& json,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1229 bool defaultValue)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1230 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1231 if (!json.isMember(member))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1232 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1233 return defaultValue;
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1234 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1235 else if (json[member].type() == Json::booleanValue)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1236 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1237 return json[member].asBool();
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1238 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1239 else
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1240 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1241 throw OrthancException(ErrorCode_BadFileFormat,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1242 "Member \"" + member + "\" should be a Boolean value");
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1243 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1244 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1245
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1246
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1247 void DicomModification::ParseModifyRequest(const Json::Value& request)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1248 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1249 if (!request.isObject())
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1250 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1251 throw OrthancException(ErrorCode_BadFileFormat);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1252 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1253
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1254 bool force = GetBooleanValue("Force", request, false);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1255
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1256 if (GetBooleanValue("RemovePrivateTags", request, false))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1257 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1258 SetRemovePrivateTags(true);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1259 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1260
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1261 if (request.isMember("Remove"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1262 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1263 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1264 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1265
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1266 if (request.isMember("Replace"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1267 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1268 ParseReplacements(*this, request["Replace"], force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1269 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1270
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1271 // The "Keep" operation only makes sense for the tags
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1272 // StudyInstanceUID, SeriesInstanceUID and SOPInstanceUID. Avoid
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1273 // this feature as much as possible, as this breaks the DICOM
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1274 // model of the real world, except if you know exactly what
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1275 // you're doing!
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1276 if (request.isMember("Keep"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1277 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1278 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1279 }
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1280
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1281 // New in Orthanc 1.6.0
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1282 if (request.isMember("PrivateCreator"))
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1283 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1284 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator");
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1285 }
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1286
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1287 if (!force)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1288 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1289 /**
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1290 * Sanity checks about the manual replacement of DICOM
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1291 * identifiers. Those checks were part of
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1292 * "DicomModification::Apply()" in Orthanc <= 1.11.2, and
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1293 * couldn't be disabled even if using the "Force" flag. Check
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1294 * out:
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1295 * https://groups.google.com/g/orthanc-users/c/xMUUZAnBa5g/m/WCEu-U2NBQAJ
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1296 **/
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1297 bool isReplacedPatientId = (IsReplaced(DICOM_TAG_PATIENT_ID) ||
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1298 uids_.find(DICOM_TAG_PATIENT_ID) != uids_.end());
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1299
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1300 if (level_ == ResourceType_Patient && !isReplacedPatientId)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1301 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1302 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1303 "When modifying a patient, her PatientID is required to be modified.");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1304 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1305
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1306 if (level_ == ResourceType_Study && isReplacedPatientId)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1307 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1308 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1309 "When modifying a study, the parent PatientID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1310 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1311
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1312 if (level_ == ResourceType_Series && isReplacedPatientId)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1313 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1314 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1315 "When modifying a series, the parent PatientID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1316 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1317
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1318 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1319 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1320 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1321 "When modifying a series, the parent StudyInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1322 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1323
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1324 if (level_ == ResourceType_Instance && isReplacedPatientId)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1325 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1326 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1327 "When modifying an instance, the parent PatientID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1328 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1329
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1330 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1331 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1332 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1333 "When modifying an instance, the parent StudyInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1334 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1335
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1336 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1337 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1338 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1339 "When modifying an instance, the parent SeriesInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1340 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1341 }
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1342 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1343
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1344
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
1345 void DicomModification::ParseAnonymizationRequest(bool& patientNameOverridden,
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1346 const Json::Value& request)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1347 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1348 if (!request.isObject())
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1349 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1350 throw OrthancException(ErrorCode_BadFileFormat);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1351 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1352
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1353 bool force = GetBooleanValue("Force", request, false);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1354
4677
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
1355 // DicomVersion version = DicomVersion_2008; // For Orthanc <= 1.2.0
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
1356 // DicomVersion version = DicomVersion_2017c; // For Orthanc between 1.3.0 and 1.9.3
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
1357 DicomVersion version = DicomVersion_2021b; // For Orthanc >= 1.9.4
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1358 if (request.isMember("DicomVersion"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1359 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1360 if (request["DicomVersion"].type() != Json::stringValue)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1361 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1362 throw OrthancException(ErrorCode_BadFileFormat);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1363 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1364 else
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1365 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1366 version = StringToDicomVersion(request["DicomVersion"].asString());
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1367 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1368 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1369
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1370 SetupAnonymization(version);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1371
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1372 if (GetBooleanValue("KeepPrivateTags", request, false))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1373 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1374 SetRemovePrivateTags(false);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1375 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1376
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1377 if (request.isMember("Remove"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1378 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1379 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1380 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1381
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1382 if (request.isMember("Replace"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1383 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1384 ParseReplacements(*this, request["Replace"], force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1385 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1386
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1387 if (request.isMember("Keep"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1388 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1389 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1390 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1391
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
1392 patientNameOverridden = (uids_.find(DICOM_TAG_PATIENT_NAME) == uids_.end());
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
1393
3709
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1394 // New in Orthanc 1.6.0
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1395 if (request.isMember("PrivateCreator"))
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1396 {
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1397 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator");
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1398 }
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1399 }
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1400
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1401 void DicomModification::SetDicomIdentifierGenerator(DicomModification::IDicomIdentifierGenerator &generator)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1402 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1403 identifierGenerator_ = &generator;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1404 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1405
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1406
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1407
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1408
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1409 static const char* REMOVE_PRIVATE_TAGS = "RemovePrivateTags";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1410 static const char* LEVEL = "Level";
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1411 static const char* ALLOW_MANUAL_IDENTIFIERS = "AllowManualIdentifiers";
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1412 static const char* KEEP_STUDY_INSTANCE_UID = "KeepStudyInstanceUID";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1413 static const char* KEEP_SERIES_INSTANCE_UID = "KeepSeriesInstanceUID";
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1414 static const char* KEEP_SOP_INSTANCE_UID = "KeepSOPInstanceUID";
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1415 static const char* UPDATE_REFERENCED_RELATIONSHIPS = "UpdateReferencedRelationships";
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
1416 static const char* IS_ANONYMIZATION = "IsAnonymization";
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1417 static const char* REMOVALS = "Removals";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1418 static const char* CLEARINGS = "Clearings";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1419 static const char* PRIVATE_TAGS_TO_KEEP = "PrivateTagsToKeep";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1420 static const char* REPLACEMENTS = "Replacements";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1421 static const char* MAP_PATIENTS = "MapPatients";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1422 static const char* MAP_STUDIES = "MapStudies";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1423 static const char* MAP_SERIES = "MapSeries";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1424 static const char* MAP_INSTANCES = "MapInstances";
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1425 static const char* PRIVATE_CREATOR = "PrivateCreator"; // New in Orthanc 1.6.0
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1426 static const char* UIDS = "Uids"; // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1427 static const char* REMOVED_RANGES = "RemovedRanges"; // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1428 static const char* KEEP_SEQUENCES = "KeepSequences"; // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1429 static const char* REMOVE_SEQUENCES = "RemoveSequences"; // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1430 static const char* SEQUENCE_REPLACEMENTS = "SequenceReplacements"; // New in Orthanc 1.9.4
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1431
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1432 void DicomModification::Serialize(Json::Value& value) const
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1433 {
5130
f2dcdbe05884 ResourceModification jobs can now use multiple threads
Alain Mazy <am@osimis.io>
parents: 5122
diff changeset
1434 boost::recursive_mutex::scoped_lock lock(uidMapMutex_);
f2dcdbe05884 ResourceModification jobs can now use multiple threads
Alain Mazy <am@osimis.io>
parents: 5122
diff changeset
1435
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1436 if (identifierGenerator_ != NULL)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1437 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1438 throw OrthancException(ErrorCode_InternalError,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1439 "Cannot serialize a DicomModification with a custom identifier generator");
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1440 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1441
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1442 value = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1443 value[REMOVE_PRIVATE_TAGS] = removePrivateTags_;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1444 value[LEVEL] = EnumerationToString(level_);
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1445 value[ALLOW_MANUAL_IDENTIFIERS] = allowManualIdentifiers_;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1446 value[KEEP_STUDY_INSTANCE_UID] = keepStudyInstanceUid_;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1447 value[KEEP_SERIES_INSTANCE_UID] = keepSeriesInstanceUid_;
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1448 value[KEEP_SOP_INSTANCE_UID] = keepSopInstanceUid_;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1449 value[UPDATE_REFERENCED_RELATIONSHIPS] = updateReferencedRelationships_;
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
1450 value[IS_ANONYMIZATION] = isAnonymization_;
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1451 value[PRIVATE_CREATOR] = privateCreator_;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1452
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1453 SerializationToolbox::WriteSetOfTags(value, removals_, REMOVALS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1454 SerializationToolbox::WriteSetOfTags(value, clearings_, CLEARINGS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1455 SerializationToolbox::WriteSetOfTags(value, privateTagsToKeep_, PRIVATE_TAGS_TO_KEEP);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1456
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1457 Json::Value& tmp = value[REPLACEMENTS];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1458
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1459 tmp = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1460
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1461 for (Replacements::const_iterator it = replacements_.begin();
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1462 it != replacements_.end(); ++it)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1463 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1464 assert(it->second != NULL);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1465 tmp[it->first.Format()] = *it->second;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1466 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1467
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1468 Json::Value& mapPatients = value[MAP_PATIENTS];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1469 Json::Value& mapStudies = value[MAP_STUDIES];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1470 Json::Value& mapSeries = value[MAP_SERIES];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1471 Json::Value& mapInstances = value[MAP_INSTANCES];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1472
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1473 mapPatients = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1474 mapStudies = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1475 mapSeries = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1476 mapInstances = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1477
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1478 for (UidMap::const_iterator it = uidMap_.begin(); it != uidMap_.end(); ++it)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1479 {
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1480 Json::Value* tmp2 = NULL;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1481
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1482 switch (it->first.first)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1483 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1484 case ResourceType_Patient:
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1485 tmp2 = &mapPatients;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1486 break;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1487
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1488 case ResourceType_Study:
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1489 tmp2 = &mapStudies;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1490 break;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1491
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1492 case ResourceType_Series:
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1493 tmp2 = &mapSeries;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1494 break;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1495
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1496 case ResourceType_Instance:
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1497 tmp2 = &mapInstances;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1498 break;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1499
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1500 default:
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1501 throw OrthancException(ErrorCode_InternalError);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1502 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1503
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1504 assert(tmp2 != NULL);
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1505 (*tmp2) [it->first.second] = it->second;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1506 }
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1507
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1508 // New in Orthanc 1.9.4
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1509 SerializationToolbox::WriteSetOfTags(value, uids_, UIDS);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1510
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1511 // New in Orthanc 1.9.4
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1512 Json::Value ranges = Json::arrayValue;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1513
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1514 for (RemovedRanges::const_iterator it = removedRanges_.begin(); it != removedRanges_.end(); ++it)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1515 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1516 Json::Value item = Json::arrayValue;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1517 item.append(it->GetGroupFrom());
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1518 item.append(it->GetGroupTo());
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1519 item.append(it->GetElementFrom());
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1520 item.append(it->GetElementTo());
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1521 ranges.append(item);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1522 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1523
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1524 value[REMOVED_RANGES] = ranges;
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1525
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1526 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1527 Json::Value lst = Json::arrayValue;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1528 for (ListOfPaths::const_iterator it = keepSequences_.begin(); it != keepSequences_.end(); ++it)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1529 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1530 lst.append(it->Format());
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1531 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1532
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1533 value[KEEP_SEQUENCES] = lst;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1534
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1535 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1536 lst = Json::arrayValue;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1537 for (ListOfPaths::const_iterator it = removeSequences_.begin(); it != removeSequences_.end(); ++it)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1538 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1539 assert(it->GetPrefixLength() > 0);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1540 lst.append(it->Format());
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1541 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1542
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1543 value[REMOVE_SEQUENCES] = lst;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1544
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1545 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1546 lst = Json::objectValue;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1547 for (SequenceReplacements::const_iterator it = sequenceReplacements_.begin(); it != sequenceReplacements_.end(); ++it)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1548 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1549 assert(*it != NULL);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1550 assert((*it)->GetPath().GetPrefixLength() > 0);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1551 lst[(*it)->GetPath().Format()] = (*it)->GetValue();
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1552 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1553
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1554 value[SEQUENCE_REPLACEMENTS] = lst;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1555 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1556
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1557 void DicomModification::UnserializeUidMap(ResourceType level,
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1558 const Json::Value& serialized,
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1559 const char* field)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1560 {
5130
f2dcdbe05884 ResourceModification jobs can now use multiple threads
Alain Mazy <am@osimis.io>
parents: 5122
diff changeset
1561 boost::recursive_mutex::scoped_lock lock(uidMapMutex_);
f2dcdbe05884 ResourceModification jobs can now use multiple threads
Alain Mazy <am@osimis.io>
parents: 5122
diff changeset
1562
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1563 if (!serialized.isMember(field) ||
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1564 serialized[field].type() != Json::objectValue)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1565 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1566 throw OrthancException(ErrorCode_BadFileFormat);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1567 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1568
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1569 Json::Value::Members names = serialized[field].getMemberNames();
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1570
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1571 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1572 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1573 const Json::Value& value = serialized[field][*it];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1574
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1575 if (value.type() != Json::stringValue)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1576 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1577 throw OrthancException(ErrorCode_BadFileFormat);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1578 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1579 else
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1580 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1581 uidMap_[std::make_pair(level, *it)] = value.asString();
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1582 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1583 }
2655
c196d76cb8fa serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
1584 }
c196d76cb8fa serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
1585
c196d76cb8fa serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
1586
2666
2540ac79ab6c SequenceOfOperationsJob serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1587 DicomModification::DicomModification(const Json::Value& serialized) :
2540ac79ab6c SequenceOfOperationsJob serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1588 identifierGenerator_(NULL)
2655
c196d76cb8fa serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
1589 {
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1590 removePrivateTags_ = SerializationToolbox::ReadBoolean(serialized, REMOVE_PRIVATE_TAGS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1591 level_ = StringToResourceType(SerializationToolbox::ReadString(serialized, LEVEL).c_str());
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1592 allowManualIdentifiers_ = SerializationToolbox::ReadBoolean(serialized, ALLOW_MANUAL_IDENTIFIERS);
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1593 keepStudyInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_STUDY_INSTANCE_UID);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1594 keepSeriesInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SERIES_INSTANCE_UID);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1595 updateReferencedRelationships_ = SerializationToolbox::ReadBoolean
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1596 (serialized, UPDATE_REFERENCED_RELATIONSHIPS);
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
1597 isAnonymization_ = SerializationToolbox::ReadBoolean(serialized, IS_ANONYMIZATION);
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1598
4688
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1599 if (serialized.isMember(KEEP_SOP_INSTANCE_UID))
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1600 {
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1601 keepSopInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SOP_INSTANCE_UID);
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1602 }
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1603 else
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1604 {
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1605 /**
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1606 * Compatibility with jobs serialized using Orthanc between
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1607 * 1.5.0 and 1.6.1. This compatibility was broken between 1.7.0
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1608 * and 1.9.3: Indeed, an exception was thrown in "ReadBoolean()"
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1609 * if "KEEP_SOP_INSTANCE_UID" was absent, because of changeset:
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1610 * https://hg.orthanc-server.com/orthanc/rev/3860
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1611 **/
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1612 keepSopInstanceUid_ = false;
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1613 }
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1614
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1615 if (serialized.isMember(PRIVATE_CREATOR))
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1616 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1617 privateCreator_ = SerializationToolbox::ReadString(serialized, PRIVATE_CREATOR);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1618 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1619
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1620 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1621 SerializationToolbox::ReadSetOfTags(clearings_, serialized, CLEARINGS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1622 SerializationToolbox::ReadSetOfTags(privateTagsToKeep_, serialized, PRIVATE_TAGS_TO_KEEP);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1623
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1624 if (!serialized.isMember(REPLACEMENTS) ||
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1625 serialized[REPLACEMENTS].type() != Json::objectValue)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1626 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1627 throw OrthancException(ErrorCode_BadFileFormat);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1628 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1629
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1630 Json::Value::Members names = serialized[REPLACEMENTS].getMemberNames();
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1631
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1632 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1633 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1634 DicomTag tag(0, 0);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1635 if (!DicomTag::ParseHexadecimal(tag, it->c_str()))
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1636 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1637 throw OrthancException(ErrorCode_BadFileFormat);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1638 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1639 else
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1640 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1641 const Json::Value& value = serialized[REPLACEMENTS][*it];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1642 replacements_.insert(std::make_pair(tag, new Json::Value(value)));
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1643 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1644 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1645
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1646 UnserializeUidMap(ResourceType_Patient, serialized, MAP_PATIENTS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1647 UnserializeUidMap(ResourceType_Study, serialized, MAP_STUDIES);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1648 UnserializeUidMap(ResourceType_Series, serialized, MAP_SERIES);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1649 UnserializeUidMap(ResourceType_Instance, serialized, MAP_INSTANCES);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1650
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1651 // New in Orthanc 1.9.4
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1652 if (serialized.isMember(UIDS)) // Backward compatibility with Orthanc <= 1.9.3
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1653 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1654 SerializationToolbox::ReadSetOfTags(uids_, serialized, UIDS);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1655 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1656 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1657 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1658 SetupUidsFromOrthanc_1_9_3();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1659 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1660
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1661 // New in Orthanc 1.9.4
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1662 removedRanges_.clear();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1663 if (serialized.isMember(REMOVED_RANGES)) // Backward compatibility with Orthanc <= 1.9.3
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1664 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1665 const Json::Value& ranges = serialized[REMOVED_RANGES];
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1666
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1667 if (ranges.type() != Json::arrayValue)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1668 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1669 throw OrthancException(ErrorCode_BadFileFormat);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1670 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1671 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1672 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1673 for (Json::Value::ArrayIndex i = 0; i < ranges.size(); i++)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1674 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1675 if (ranges[i].type() != Json::arrayValue ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1676 ranges[i].size() != 4 ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1677 !ranges[i][0].isUInt() ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1678 !ranges[i][1].isUInt() ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1679 !ranges[i][2].isUInt() ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1680 !ranges[i][3].isUInt())
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1681 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1682 throw OrthancException(ErrorCode_BadFileFormat);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1683 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1684 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1685 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1686 Json::LargestUInt groupFrom = ranges[i][0].asUInt();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1687 Json::LargestUInt groupTo = ranges[i][1].asUInt();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1688 Json::LargestUInt elementFrom = ranges[i][2].asUInt();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1689 Json::LargestUInt elementTo = ranges[i][3].asUInt();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1690
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1691 if (groupFrom > groupTo ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1692 elementFrom > elementTo ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1693 groupTo > 0xffffu ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1694 elementTo > 0xffffu)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1695 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1696 throw OrthancException(ErrorCode_BadFileFormat);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1697 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1698 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1699 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1700 removedRanges_.push_back(DicomTagRange(groupFrom, groupTo, elementFrom, elementTo));
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1701 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1702 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1703 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1704 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1705 }
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1706
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1707 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1708 if (serialized.isMember(KEEP_SEQUENCES))
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1709 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1710 const Json::Value& keep = serialized[KEEP_SEQUENCES];
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1711
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1712 if (keep.type() != Json::arrayValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1713 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1714 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1715 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1716 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1717 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1718 for (Json::Value::ArrayIndex i = 0; i < keep.size(); i++)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1719 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1720 if (keep[i].type() != Json::stringValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1721 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1722 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1723 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1724 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1725 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1726 keepSequences_.push_back(DicomPath::Parse(keep[i].asString()));
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1727 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1728 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1729 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1730 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1731
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1732 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1733 if (serialized.isMember(REMOVE_SEQUENCES))
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1734 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1735 const Json::Value& remove = serialized[REMOVE_SEQUENCES];
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1736
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1737 if (remove.type() != Json::arrayValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1738 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1739 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1740 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1741 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1742 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1743 for (Json::Value::ArrayIndex i = 0; i < remove.size(); i++)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1744 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1745 if (remove[i].type() != Json::stringValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1746 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1747 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1748 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1749 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1750 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1751 removeSequences_.push_back(DicomPath::Parse(remove[i].asString()));
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1752 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1753 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1754 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1755 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1756
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1757 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1758 if (serialized.isMember(SEQUENCE_REPLACEMENTS))
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1759 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1760 const Json::Value& replace = serialized[SEQUENCE_REPLACEMENTS];
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1761
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1762 if (replace.type() != Json::objectValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1763 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1764 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1765 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1766 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1767 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1768 Json::Value::Members members = replace.getMemberNames();
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1769 for (size_t i = 0; i < members.size(); i++)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1770 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1771 sequenceReplacements_.push_back(
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1772 new SequenceReplacement(DicomPath::Parse(members[i]), replace[members[i]]));
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1773 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1774 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1775 }
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1776 }
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1777
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1778
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1779 void DicomModification::SetPrivateCreator(const std::string &privateCreator)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1780 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1781 privateCreator_ = privateCreator;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1782 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1783
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1784 const std::string &DicomModification::GetPrivateCreator() const
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1785 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1786 return privateCreator_;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1787 }
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1788
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1789
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1790 void DicomModification::Keep(const DicomPath& path)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1791 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1792 if (path.GetPrefixLength() == 0)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1793 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1794 Keep(path.GetFinalTag());
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1795 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1796
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1797 keepSequences_.push_back(path);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1798 MarkNotOrthancAnonymization();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1799 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1800
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1801
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1802 void DicomModification::Remove(const DicomPath& path)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1803 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1804 if (path.GetPrefixLength() == 0)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1805 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1806 Remove(path.GetFinalTag());
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1807 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1808 else
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1809 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1810 removeSequences_.push_back(path);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1811 MarkNotOrthancAnonymization();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1812 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1813 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1814
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1815
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1816 void DicomModification::Replace(const DicomPath& path,
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1817 const Json::Value& value,
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1818 bool safeForAnonymization)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1819 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1820 if (path.GetPrefixLength() == 0)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1821 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1822 Replace(path.GetFinalTag(), value, safeForAnonymization);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1823 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1824 else
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1825 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1826 sequenceReplacements_.push_back(new SequenceReplacement(path, value));
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1827
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1828 if (!safeForAnonymization)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1829 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1830 MarkNotOrthancAnonymization();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1831 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1832 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1833 }
4789
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1834
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1835
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1836 bool DicomModification::IsAlteredTag(const DicomTag& tag) const
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1837 {
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1838 return (uids_.find(tag) != uids_.end() ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1839 IsCleared(tag) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1840 IsRemoved(tag) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1841 IsReplaced(tag) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1842 (tag.IsPrivate() &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1843 ArePrivateTagsRemoved() &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1844 privateTagsToKeep_.find(tag) == privateTagsToKeep_.end()) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1845 (isAnonymization_ && (
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1846 tag == DICOM_TAG_PATIENT_NAME ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1847 tag == DICOM_TAG_PATIENT_ID)) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1848 (tag == DICOM_TAG_STUDY_INSTANCE_UID &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1849 !keepStudyInstanceUid_) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1850 (tag == DICOM_TAG_SERIES_INSTANCE_UID &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1851 !keepSeriesInstanceUid_) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1852 (tag == DICOM_TAG_SOP_INSTANCE_UID &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1853 !keepSopInstanceUid_));
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1854 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1855 }