Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/DicomModification.cpp @ 4734:b51c08bd5c38
added ITagVisitor::Action_Remove
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 05 Jul 2021 16:12:10 +0200 |
parents | dd6274412ff4 |
children | 979ae3ea3381 |
rev | line source |
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786 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
786 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
786 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
786 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
786 | 20 **/ |
21 | |
22 | |
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23 #include "../PrecompiledHeaders.h" |
786 | 24 #include "DicomModification.h" |
25 | |
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26 #include "../Compatibility.h" |
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27 #include "../Logging.h" |
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28 #include "../OrthancException.h" |
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29 #include "../SerializationToolbox.h" |
790 | 30 #include "FromDcmtkBridge.h" |
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31 #include "ITagVisitor.h" |
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33 #include <memory> // For std::unique_ptr |
795 | 34 |
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35 |
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36 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2008 = |
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37 "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1"; |
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38 |
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39 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2017c = |
2314 | 40 "Orthanc " ORTHANC_VERSION " - PS 3.15-2017c Table E.1-1 Basic Profile"; |
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41 |
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42 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2021b = |
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43 "Orthanc " ORTHANC_VERSION " - PS 3.15-2021b Table E.1-1 Basic Profile"; |
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44 |
786 | 45 namespace Orthanc |
46 { | |
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47 DicomModification::DicomTagRange::DicomTagRange(uint16_t groupFrom, |
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48 uint16_t groupTo, |
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49 uint16_t elementFrom, |
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50 uint16_t elementTo) : |
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51 groupFrom_(groupFrom), |
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52 groupTo_(groupTo), |
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53 elementFrom_(elementFrom), |
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54 elementTo_(elementTo) |
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55 { |
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56 } |
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57 |
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58 |
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59 bool DicomModification::DicomTagRange::Contains(const DicomTag& tag) const |
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60 { |
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61 return (tag.GetGroup() >= groupFrom_ && |
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62 tag.GetGroup() <= groupTo_ && |
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63 tag.GetElement() >= elementFrom_ && |
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64 tag.GetElement() <= elementTo_); |
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65 } |
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66 |
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67 |
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68 class DicomModification::RelationshipsVisitor : public ITagVisitor |
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69 { |
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70 private: |
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71 DicomModification& that_; |
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72 |
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73 // This method is only applicable to first-level tags |
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74 bool IsManuallyModified(const DicomTag& tag) const |
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75 { |
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76 return (that_.IsCleared(tag) || |
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77 that_.IsRemoved(tag) || |
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78 that_.IsReplaced(tag)); |
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79 } |
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80 |
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81 public: |
4200 | 82 explicit RelationshipsVisitor(DicomModification& that) : |
83 that_(that) | |
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84 { |
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85 } |
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86 |
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87 virtual Action VisitNotSupported(const std::vector<DicomTag>& parentTags, |
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88 const std::vector<size_t>& parentIndexes, |
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89 const DicomTag& tag, |
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90 ValueRepresentation vr) ORTHANC_OVERRIDE |
3195 | 91 { |
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92 return Action_None; |
3195 | 93 } |
94 | |
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95 virtual Action VisitEmptySequence(const std::vector<DicomTag>& parentTags, |
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96 const std::vector<size_t>& parentIndexes, |
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97 const DicomTag& tag) ORTHANC_OVERRIDE |
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98 { |
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99 return Action_None; |
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100 } |
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101 |
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102 virtual Action VisitBinary(const std::vector<DicomTag>& parentTags, |
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103 const std::vector<size_t>& parentIndexes, |
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104 const DicomTag& tag, |
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105 ValueRepresentation vr, |
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106 const void* data, |
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107 size_t size) ORTHANC_OVERRIDE |
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108 { |
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109 return Action_None; |
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110 } |
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111 |
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112 virtual Action VisitIntegers(const std::vector<DicomTag>& parentTags, |
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113 const std::vector<size_t>& parentIndexes, |
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114 const DicomTag& tag, |
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115 ValueRepresentation vr, |
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116 const std::vector<int64_t>& values) ORTHANC_OVERRIDE |
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117 { |
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118 return Action_None; |
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119 } |
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120 |
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121 virtual Action VisitDoubles(const std::vector<DicomTag>& parentTags, |
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122 const std::vector<size_t>& parentIndexes, |
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123 const DicomTag& tag, |
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124 ValueRepresentation vr, |
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125 const std::vector<double>& value) ORTHANC_OVERRIDE |
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126 { |
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127 return Action_None; |
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128 } |
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129 |
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130 virtual Action VisitAttributes(const std::vector<DicomTag>& parentTags, |
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131 const std::vector<size_t>& parentIndexes, |
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132 const DicomTag& tag, |
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133 const std::vector<DicomTag>& value) ORTHANC_OVERRIDE |
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134 { |
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135 return Action_None; |
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136 } |
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137 |
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138 virtual Action VisitString(std::string& newValue, |
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139 const std::vector<DicomTag>& parentTags, |
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140 const std::vector<size_t>& parentIndexes, |
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141 const DicomTag& tag, |
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142 ValueRepresentation vr, |
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143 const std::string& value) ORTHANC_OVERRIDE |
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144 { |
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145 /** |
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146 * Note that all the tags in "uids_" have the VR UI (unique |
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147 * identifier), and are considered as strings. |
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148 * |
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149 * Also, the tags "SOP Instance UID", "Series Instance UID" and |
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150 * "Study Instance UID" are *never* included in "uids_", as they |
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151 * are separately handed by "MapDicomTags()". |
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152 **/ |
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153 |
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154 assert(that_.uids_.find(DICOM_TAG_STUDY_INSTANCE_UID) == that_.uids_.end()); |
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155 assert(that_.uids_.find(DICOM_TAG_SERIES_INSTANCE_UID) == that_.uids_.end()); |
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156 assert(that_.uids_.find(DICOM_TAG_SOP_INSTANCE_UID) == that_.uids_.end()); |
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157 |
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158 if (parentTags.empty()) |
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159 { |
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160 // We are on a first-level tag |
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161 if (that_.uids_.find(tag) != that_.uids_.end() && |
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162 !IsManuallyModified(tag)) |
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163 { |
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164 if (tag == DICOM_TAG_PATIENT_ID || |
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165 tag == DICOM_TAG_PATIENT_NAME) |
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166 { |
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167 assert(vr == ValueRepresentation_LongString || |
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168 vr == ValueRepresentation_PersonName); |
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169 newValue = that_.MapDicomIdentifier(value, ResourceType_Patient); |
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170 } |
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171 else |
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172 { |
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173 // This is a first-level UID tag that must be anonymized |
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174 assert(vr == ValueRepresentation_UniqueIdentifier || |
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175 vr == ValueRepresentation_NotSupported /* for older versions of DCMTK */); |
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176 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance); |
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177 } |
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178 |
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179 return Action_Replace; |
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180 } |
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181 else |
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182 { |
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183 return Action_None; |
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184 } |
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185 } |
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186 else |
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187 { |
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188 // We are within a sequence |
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189 |
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190 if (!that_.keepSequences_.empty()) |
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191 { |
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192 // New in Orthanc 1.9.4 - Solves issue LSD-629 |
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193 DicomPath path(parentTags, parentIndexes, tag); |
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194 |
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195 for (ListOfPaths::const_iterator it = that_.keepSequences_.begin(); |
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196 it != that_.keepSequences_.end(); ++it) |
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197 { |
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198 if (DicomPath::IsMatch(*it, path)) |
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199 { |
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200 return Action_None; |
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201 } |
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202 } |
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203 } |
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204 |
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205 if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
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206 { |
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207 newValue = that_.MapDicomIdentifier(value, ResourceType_Study); |
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208 return Action_Replace; |
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209 } |
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210 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
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211 { |
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212 newValue = that_.MapDicomIdentifier(value, ResourceType_Series); |
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213 return Action_Replace; |
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214 } |
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215 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
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216 { |
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217 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance); |
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218 return Action_Replace; |
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219 } |
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220 else if (that_.uids_.find(tag) != that_.uids_.end()) |
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221 { |
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222 if (tag == DICOM_TAG_PATIENT_ID || |
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223 tag == DICOM_TAG_PATIENT_NAME) |
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224 { |
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225 newValue = that_.MapDicomIdentifier(value, ResourceType_Patient); |
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226 } |
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227 else |
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228 { |
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229 assert(vr == ValueRepresentation_UniqueIdentifier || |
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230 vr == ValueRepresentation_NotSupported /* for older versions of DCMTK */); |
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231 |
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232 if (parentTags.size() == 2 && |
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233 parentTags[0] == DICOM_TAG_REFERENCED_FRAME_OF_REFERENCE_SEQUENCE && |
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234 parentTags[1] == DICOM_TAG_RT_REFERENCED_STUDY_SEQUENCE && |
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235 tag == DICOM_TAG_REFERENCED_SOP_INSTANCE_UID) |
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236 { |
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237 /** |
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238 * In RT-STRUCT, this ReferencedSOPInstanceUID is actually |
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239 * referencing a StudyInstanceUID !! (observed in many |
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240 * data sets including: |
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241 * https://wiki.cancerimagingarchive.net/display/Public/Lung+CT+Segmentation+Challenge+2017) |
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242 * Tested in "test_anonymize_relationships_5". Introduced |
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243 * in: https://hg.orthanc-server.com/orthanc/rev/3513 |
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244 **/ |
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245 newValue = that_.MapDicomIdentifier(value, ResourceType_Study); |
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246 } |
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247 else |
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248 { |
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249 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance); |
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250 } |
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251 } |
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252 |
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253 return Action_Replace; |
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254 } |
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255 else |
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256 { |
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257 return Action_None; |
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258 } |
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259 } |
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260 } |
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261 |
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262 void RemoveRelationships(ParsedDicomFile& dicom) const |
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263 { |
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264 for (SetOfTags::const_iterator it = that_.uids_.begin(); it != that_.uids_.end(); ++it) |
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265 { |
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266 assert(*it != DICOM_TAG_STUDY_INSTANCE_UID && |
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267 *it != DICOM_TAG_SERIES_INSTANCE_UID && |
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268 *it != DICOM_TAG_SOP_INSTANCE_UID); |
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269 |
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270 if (!IsManuallyModified(*it)) |
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271 { |
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272 dicom.Remove(*it); |
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273 } |
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274 } |
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275 |
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276 // The only two sequences with to the "X/Z/U*" rule in the |
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277 // basic profile. They were already present in Orthanc 1.9.3. |
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278 if (!IsManuallyModified(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE)) |
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279 { |
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280 dicom.Remove(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE); |
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281 } |
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282 |
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283 if (!IsManuallyModified(DICOM_TAG_SOURCE_IMAGE_SEQUENCE)) |
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284 { |
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285 dicom.Remove(DICOM_TAG_SOURCE_IMAGE_SEQUENCE); |
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286 } |
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287 } |
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288 }; |
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289 |
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290 |
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291 void DicomModification::CancelReplacement(const DicomTag& tag) |
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292 { |
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293 Replacements::iterator it = replacements_.find(tag); |
2323 | 294 |
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295 if (it != replacements_.end()) |
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296 { |
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297 assert(it->second != NULL); |
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298 delete it->second; |
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299 replacements_.erase(it); |
2323 | 300 } |
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301 } |
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302 |
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303 |
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304 void DicomModification::ReplaceInternal(const DicomTag& tag, |
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305 const Json::Value& value) |
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306 { |
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307 Replacements::iterator it = replacements_.find(tag); |
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308 |
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309 if (it != replacements_.end()) |
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310 { |
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311 assert(it->second != NULL); |
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312 delete it->second; |
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313 it->second = NULL; // In the case of an exception during the clone |
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314 it->second = new Json::Value(value); // Clone |
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315 } |
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316 else |
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317 { |
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318 replacements_[tag] = new Json::Value(value); // Clone |
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319 } |
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320 } |
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321 |
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322 |
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323 void DicomModification::ClearReplacements() |
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324 { |
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325 for (Replacements::iterator it = replacements_.begin(); |
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326 it != replacements_.end(); ++it) |
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327 { |
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328 assert(it->second != NULL); |
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329 delete it->second; |
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330 } |
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331 |
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332 replacements_.clear(); |
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333 |
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334 for (SequenceReplacements::iterator it = sequenceReplacements_.begin(); |
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335 it != sequenceReplacements_.end(); ++it) |
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336 { |
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337 assert(*it != NULL); |
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338 assert((*it)->GetPath().GetPrefixLength() > 0); |
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339 delete *it; |
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340 } |
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341 |
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342 sequenceReplacements_.clear(); |
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343 } |
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344 |
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345 |
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346 void DicomModification::MarkNotOrthancAnonymization() |
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347 { |
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348 Replacements::iterator it = replacements_.find(DICOM_TAG_DEIDENTIFICATION_METHOD); |
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349 |
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350 if (it != replacements_.end()) |
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351 { |
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352 assert(it->second != NULL); |
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353 |
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354 if (it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2008 || |
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355 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2017c || |
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356 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2021b) |
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357 { |
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358 delete it->second; |
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359 replacements_.erase(it); |
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360 } |
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361 } |
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362 } |
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363 |
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364 void DicomModification::RegisterMappedDicomIdentifier(const std::string& original, |
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365 const std::string& mapped, |
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366 ResourceType level) |
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367 { |
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368 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, original)); |
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369 |
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370 if (previous == uidMap_.end()) |
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371 { |
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372 uidMap_.insert(std::make_pair(std::make_pair(level, original), mapped)); |
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373 } |
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374 } |
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375 |
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376 std::string DicomModification::MapDicomIdentifier(const std::string& original, |
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377 ResourceType level) |
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378 { |
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379 const std::string stripped = Toolbox::StripSpaces(original); |
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380 |
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381 std::string mapped; |
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382 |
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383 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, stripped)); |
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384 |
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385 if (previous == uidMap_.end()) |
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386 { |
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DicomModification::SetDicomIdentifierGenerator()
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387 if (identifierGenerator_ == NULL) |
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388 { |
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389 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level); |
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390 } |
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391 else |
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392 { |
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393 if (!identifierGenerator_->Apply(mapped, stripped, level, currentSource_)) |
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394 { |
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395 throw OrthancException(ErrorCode_InternalError, |
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396 "Unable to generate an anonymized ID"); |
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397 } |
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398 } |
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399 |
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400 uidMap_.insert(std::make_pair(std::make_pair(level, stripped), mapped)); |
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401 } |
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402 else |
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403 { |
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404 mapped = previous->second; |
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405 } |
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406 |
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407 return mapped; |
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408 } |
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409 |
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410 |
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411 void DicomModification::MapDicomTags(ParsedDicomFile& dicom, |
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412 ResourceType level) |
786 | 413 { |
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414 std::unique_ptr<DicomTag> tag; |
786 | 415 |
416 switch (level) | |
417 { | |
788 | 418 case ResourceType_Study: |
786 | 419 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID)); |
420 break; | |
421 | |
788 | 422 case ResourceType_Series: |
786 | 423 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID)); |
424 break; | |
425 | |
788 | 426 case ResourceType_Instance: |
786 | 427 tag.reset(new DicomTag(DICOM_TAG_SOP_INSTANCE_UID)); |
428 break; | |
429 | |
430 default: | |
431 throw OrthancException(ErrorCode_InternalError); | |
432 } | |
433 | |
434 std::string original; | |
4273
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435 if (!const_cast<const ParsedDicomFile&>(dicom).GetTagValue(original, *tag)) |
786 | 436 { |
437 original = ""; | |
438 } | |
439 | |
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440 std::string mapped = MapDicomIdentifier(original, level); |
786 | 441 |
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442 dicom.Replace(*tag, mapped, |
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443 false /* don't try and decode data URI scheme for UIDs */, |
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444 DicomReplaceMode_InsertIfAbsent, privateCreator_); |
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445 } |
786 | 446 |
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447 |
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448 DicomModification::DicomModification() : |
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449 removePrivateTags_(false), |
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450 level_(ResourceType_Instance), |
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451 allowManualIdentifiers_(true), |
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changeset
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452 keepStudyInstanceUid_(false), |
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changeset
|
453 keepSeriesInstanceUid_(false), |
3860
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allow Keeping the SOPInstanceUID in /instances/../modify
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diff
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|
454 keepSopInstanceUid_(false), |
2535
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DicomModification::SetDicomIdentifierGenerator()
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diff
changeset
|
455 updateReferencedRelationships_(true), |
2721 | 456 isAnonymization_(false), |
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457 //privateCreator_("PrivateCreator"), |
2535
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|
458 identifierGenerator_(NULL) |
786 | 459 { |
460 } | |
461 | |
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462 DicomModification::~DicomModification() |
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463 { |
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|
464 ClearReplacements(); |
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465 } |
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466 |
787
ac18946afa74
refactoring of anonymization/modification
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786
diff
changeset
|
467 void DicomModification::Keep(const DicomTag& tag) |
786 | 468 { |
469 removals_.erase(tag); | |
2310
b7fba68747f6
DicomModification::Clear()
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2309
diff
changeset
|
470 clearings_.erase(tag); |
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471 uids_.erase(tag); |
2323 | 472 |
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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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diff
changeset
|
473 CancelReplacement(tag); |
991
2f76b92addd4
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diff
changeset
|
474 |
2194
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diff
changeset
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475 if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
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476 { |
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diff
changeset
|
477 keepStudyInstanceUid_ = true; |
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diff
changeset
|
478 } |
2321
65ffba10cace
warning message in DicomModification::Keep()
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2314
diff
changeset
|
479 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
2194
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changeset
|
480 { |
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"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
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diff
changeset
|
481 keepSeriesInstanceUid_ = true; |
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diff
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482 } |
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483 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
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484 { |
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485 keepSopInstanceUid_ = true; |
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486 } |
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487 else if (tag.IsPrivate()) |
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488 { |
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489 privateTagsToKeep_.insert(tag); |
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490 } |
2194
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491 |
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492 MarkNotOrthancAnonymization(); |
786 | 493 } |
494 | |
495 void DicomModification::Remove(const DicomTag& tag) | |
496 { | |
497 removals_.insert(tag); | |
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498 clearings_.erase(tag); |
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499 uids_.erase(tag); |
2323 | 500 CancelReplacement(tag); |
2310
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501 privateTagsToKeep_.erase(tag); |
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502 |
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503 MarkNotOrthancAnonymization(); |
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504 } |
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DicomModification::Clear()
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505 |
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506 void DicomModification::Clear(const DicomTag& tag) |
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507 { |
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508 removals_.erase(tag); |
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509 clearings_.insert(tag); |
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510 uids_.erase(tag); |
2323 | 511 CancelReplacement(tag); |
991
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512 privateTagsToKeep_.erase(tag); |
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513 |
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514 MarkNotOrthancAnonymization(); |
786 | 515 } |
516 | |
517 bool DicomModification::IsRemoved(const DicomTag& tag) const | |
518 { | |
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519 if (removals_.find(tag) != removals_.end()) |
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520 { |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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521 return true; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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522 } |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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523 else |
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524 { |
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525 for (RemovedRanges::const_iterator it = removedRanges_.begin(); |
4690 | 526 it != removedRanges_.end(); ++it) |
4678
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Full support for the anonymization of subsequences containing tags whose VR is UI
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527 { |
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diff
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|
528 if (it->Contains(tag)) |
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diff
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529 { |
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530 return true; |
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531 } |
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532 } |
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533 |
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534 return false; |
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|
535 } |
786 | 536 } |
537 | |
2310
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diff
changeset
|
538 bool DicomModification::IsCleared(const DicomTag& tag) const |
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DicomModification::Clear()
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diff
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539 { |
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DicomModification::Clear()
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540 return clearings_.find(tag) != clearings_.end(); |
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|
541 } |
b7fba68747f6
DicomModification::Clear()
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diff
changeset
|
542 |
786 | 543 void DicomModification::Replace(const DicomTag& tag, |
1698
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DicomModification use Json::Value
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diff
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544 const Json::Value& value, |
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diff
changeset
|
545 bool safeForAnonymization) |
786 | 546 { |
2310
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DicomModification::Clear()
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changeset
|
547 clearings_.erase(tag); |
786 | 548 removals_.erase(tag); |
4678
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
changeset
|
549 uids_.erase(tag); |
991
2f76b92addd4
keep private tags during anonymization
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916
diff
changeset
|
550 privateTagsToKeep_.erase(tag); |
1698
d78b87f93bcf
DicomModification use Json::Value
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diff
changeset
|
551 ReplaceInternal(tag, value); |
1279
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More flexible /modify and /anonymize for single instance
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diff
changeset
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552 |
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changeset
|
553 if (!safeForAnonymization) |
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554 { |
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|
555 MarkNotOrthancAnonymization(); |
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diff
changeset
|
556 } |
786 | 557 } |
558 | |
1698
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DicomModification use Json::Value
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diff
changeset
|
559 |
786 | 560 bool DicomModification::IsReplaced(const DicomTag& tag) const |
561 { | |
562 return replacements_.find(tag) != replacements_.end(); | |
563 } | |
564 | |
1698
d78b87f93bcf
DicomModification use Json::Value
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diff
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|
565 const Json::Value& DicomModification::GetReplacement(const DicomTag& tag) const |
786 | 566 { |
567 Replacements::const_iterator it = replacements_.find(tag); | |
568 | |
569 if (it == replacements_.end()) | |
570 { | |
571 throw OrthancException(ErrorCode_InexistentItem); | |
572 } | |
573 else | |
574 { | |
4685
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
575 assert(it->second != NULL); |
1698
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DicomModification use Json::Value
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parents:
1695
diff
changeset
|
576 return *it->second; |
786 | 577 } |
578 } | |
579 | |
1698
d78b87f93bcf
DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
580 |
d78b87f93bcf
DicomModification use Json::Value
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diff
changeset
|
581 std::string DicomModification::GetReplacementAsString(const DicomTag& tag) const |
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DicomModification use Json::Value
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582 { |
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diff
changeset
|
583 const Json::Value& json = GetReplacement(tag); |
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DicomModification use Json::Value
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diff
changeset
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584 |
d78b87f93bcf
DicomModification use Json::Value
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diff
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|
585 if (json.type() != Json::stringValue) |
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DicomModification use Json::Value
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diff
changeset
|
586 { |
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DicomModification use Json::Value
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diff
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|
587 throw OrthancException(ErrorCode_BadParameterType); |
d78b87f93bcf
DicomModification use Json::Value
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diff
changeset
|
588 } |
d78b87f93bcf
DicomModification use Json::Value
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diff
changeset
|
589 else |
d78b87f93bcf
DicomModification use Json::Value
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diff
changeset
|
590 { |
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DicomModification use Json::Value
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diff
changeset
|
591 return json.asString(); |
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DicomModification use Json::Value
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diff
changeset
|
592 } |
d78b87f93bcf
DicomModification use Json::Value
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parents:
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diff
changeset
|
593 } |
d78b87f93bcf
DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
594 |
d78b87f93bcf
DicomModification use Json::Value
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parents:
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diff
changeset
|
595 |
786 | 596 void DicomModification::SetRemovePrivateTags(bool removed) |
597 { | |
598 removePrivateTags_ = removed; | |
1279
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changeset
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599 |
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|
600 if (!removed) |
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|
601 { |
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More flexible /modify and /anonymize for single instance
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changeset
|
602 MarkNotOrthancAnonymization(); |
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diff
changeset
|
603 } |
786 | 604 } |
605 | |
4297 | 606 bool DicomModification::ArePrivateTagsRemoved() const |
607 { | |
608 return removePrivateTags_; | |
609 } | |
610 | |
788 | 611 void DicomModification::SetLevel(ResourceType level) |
786 | 612 { |
613 uidMap_.clear(); | |
614 level_ = level; | |
1279
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|
615 |
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|
616 if (level != ResourceType_Patient) |
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617 { |
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618 MarkNotOrthancAnonymization(); |
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diff
changeset
|
619 } |
786 | 620 } |
621 | |
4297 | 622 ResourceType DicomModification::GetLevel() const |
623 { | |
624 return level_; | |
625 } | |
626 | |
2309
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2277
diff
changeset
|
627 |
4678
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diff
changeset
|
628 static void SetupUidsFromOrthancInternal(std::set<DicomTag>& uids, |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
changeset
|
629 std::set<DicomTag>& removals, |
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diff
changeset
|
630 const DicomTag& tag) |
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changeset
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631 { |
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changeset
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632 uids.insert(tag); |
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diff
changeset
|
633 removals.erase(tag); // Necessary if unserializing a job from 1.9.3 |
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diff
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|
634 } |
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635 |
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diff
changeset
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636 |
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diff
changeset
|
637 void DicomModification::SetupUidsFromOrthanc_1_9_3() |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
changeset
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638 { |
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diff
changeset
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639 /** |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
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640 * Values below come from the hardcoded UID of Orthanc 1.9.3 |
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641 * in DicomModification::RelationshipsVisitor::VisitString() and |
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642 * DicomModification::RelationshipsVisitor::RemoveRelationships() |
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643 * https://hg.orthanc-server.com/orthanc/file/Orthanc-1.9.3/OrthancFramework/Sources/DicomParsing/DicomModification.cpp#l117 |
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644 **/ |
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645 uids_.clear(); |
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646 |
4693
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647 // (*) "PatientID" and "PatientName" are handled as UIDs since Orthanc 1.9.4 |
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648 uids_.insert(DICOM_TAG_PATIENT_ID); |
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649 uids_.insert(DICOM_TAG_PATIENT_NAME); |
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650 |
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651 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0008, 0x0014)); // Instance Creator UID <= from SetupAnonymization2008() |
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652 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID <= from VisitString() + RemoveRelationships() |
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653 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0020, 0x0052)); // Frame of Reference UID <= from VisitString() + RemoveRelationships() |
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654 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID <= from SetupAnonymization2008() |
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655 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0040, 0xa124)); // UID <= from SetupAnonymization2008() |
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656 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0088, 0x0140)); // Storage Media File-set UID <= from SetupAnonymization2008() |
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657 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID <= from VisitString() + RemoveRelationships() |
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658 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID <= from VisitString() + RemoveRelationships() |
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659 } |
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660 |
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661 |
2309
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662 void DicomModification::SetupAnonymization2008() |
786 | 663 { |
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664 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles |
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665 // https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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666 |
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667 SetupUidsFromOrthanc_1_9_3(); |
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668 |
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669 //uids_.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID => set in SetupUidsFromOrthanc_1_9_3() |
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670 //removals_.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set in Apply() |
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671 removals_.insert(DicomTag(0x0008, 0x0050)); // Accession Number |
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672 removals_.insert(DicomTag(0x0008, 0x0080)); // Institution Name |
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673 removals_.insert(DicomTag(0x0008, 0x0081)); // Institution Address |
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674 removals_.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name |
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675 removals_.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address |
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676 removals_.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers |
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677 removals_.insert(DicomTag(0x0008, 0x1010)); // Station Name |
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678 removals_.insert(DicomTag(0x0008, 0x1030)); // Study Description |
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679 removals_.insert(DicomTag(0x0008, 0x103e)); // Series Description |
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680 removals_.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name |
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681 removals_.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record |
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682 removals_.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name |
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683 removals_.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study |
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684 removals_.insert(DicomTag(0x0008, 0x1070)); // Operators' Name |
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685 removals_.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description |
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686 //uids_.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID => set in SetupUidsFromOrthanc_1_9_3() |
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687 removals_.insert(DicomTag(0x0008, 0x2111)); // Derivation Description |
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688 //removals_.insert(DicomTag(0x0010, 0x0010)); // Patient's Name => cf. below (*) |
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689 //removals_.insert(DicomTag(0x0010, 0x0020)); // Patient ID => cf. below (*) |
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690 removals_.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date |
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691 removals_.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time |
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692 removals_.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex |
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693 removals_.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids |
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694 removals_.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names |
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695 removals_.insert(DicomTag(0x0010, 0x1010)); // Patient's Age |
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696 removals_.insert(DicomTag(0x0010, 0x1020)); // Patient's Size |
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697 removals_.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight |
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698 removals_.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator |
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699 removals_.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group |
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700 removals_.insert(DicomTag(0x0010, 0x2180)); // Occupation |
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701 removals_.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History |
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702 removals_.insert(DicomTag(0x0010, 0x4000)); // Patient Comments |
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703 removals_.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number |
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704 removals_.insert(DicomTag(0x0018, 0x1030)); // Protocol Name |
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705 //removals_.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => set in Apply() |
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706 //removals_.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => set in Apply() |
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707 removals_.insert(DicomTag(0x0020, 0x0010)); // Study ID |
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708 //uids_.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3() |
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709 //uids_.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3() |
2309
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710 removals_.insert(DicomTag(0x0020, 0x4000)); // Image Comments |
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711 removals_.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence |
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712 //uids_.insert(DicomTag(0x0040, 0xa124)); // UID => set in SetupUidsFromOrthanc_1_9_3() |
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713 removals_.insert(DicomTag(0x0040, 0xa730)); // Content Sequence |
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714 //uids_.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID => set in SetupUidsFromOrthanc_1_9_3() |
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715 //uids_.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3() |
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716 //uids_.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3() |
786 | 717 |
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718 // Some more removals (from the experience of DICOM files at the CHU of Liege) |
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719 removals_.insert(DicomTag(0x0010, 0x1040)); // Patient's Address |
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720 removals_.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician |
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721 removals_.insert(DicomTag(0x0010, 0x2154)); // PatientTelephoneNumbers |
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722 removals_.insert(DicomTag(0x0010, 0x2000)); // Medical Alerts |
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723 |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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diff
changeset
|
724 // Set the DeidentificationMethod tag |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
725 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2008); |
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|
726 } |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
727 |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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parents:
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diff
changeset
|
728 |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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diff
changeset
|
729 void DicomModification::SetupAnonymization2017c() |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
730 { |
2313
d19e716b79fa
switch to anonymization according to DICOM 2017c
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diff
changeset
|
731 /** |
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732 * This is Table E.1-1 from PS 3.15-2017c (DICOM Part 15: Security |
d19e716b79fa
switch to anonymization according to DICOM 2017c
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diff
changeset
|
733 * and System Management Profiles), "basic profile" column. It was |
4675
7e4d1f2b3a8f
GenerateAnonymizationProfile.py can read from URL
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diff
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|
734 * generated automatically by calling: |
7e4d1f2b3a8f
GenerateAnonymizationProfile.py can read from URL
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diff
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|
735 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py |
7e4d1f2b3a8f
GenerateAnonymizationProfile.py can read from URL
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diff
changeset
|
736 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2017c/part15.xml" |
2313
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switch to anonymization according to DICOM 2017c
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diff
changeset
|
737 **/ |
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switch to anonymization according to DICOM 2017c
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diff
changeset
|
738 |
4676
caf963ee3de9
DicomModification_Anonymization2017c.impl.h
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diff
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739 #include "DicomModification_Anonymization2017c.impl.h" |
2313
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diff
changeset
|
740 |
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switch to anonymization according to DICOM 2017c
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|
741 // Set the DeidentificationMethod tag |
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changeset
|
742 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2017c); |
2309
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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diff
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|
743 } |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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744 |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
745 |
4677
521e39b3f2c0
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|
746 void DicomModification::SetupAnonymization2021b() |
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747 { |
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|
748 /** |
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749 * This is Table E.1-1 from PS 3.15-2021b (DICOM Part 15: Security |
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diff
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|
750 * and System Management Profiles), "basic profile" column. It was |
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diff
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|
751 * generated automatically by calling: |
521e39b3f2c0
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|
752 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py |
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|
753 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2021b/part15.xml" |
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|
754 * |
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|
755 * http://dicom.nema.org/medical/dicom/2021b/output/chtml/part15/chapter_E.html#table_E.1-1a |
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diff
changeset
|
756 * http://dicom.nema.org/medical/dicom/2021b/output/chtml/part15/chapter_E.html#table_E.1-1 |
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|
757 **/ |
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|
758 |
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|
759 #include "DicomModification_Anonymization2021b.impl.h" |
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|
760 |
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|
761 // Set the DeidentificationMethod tag |
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|
762 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2021b); |
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|
763 } |
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|
764 |
521e39b3f2c0
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|
765 |
2309
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
766 void DicomModification::SetupAnonymization(DicomVersion version) |
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767 { |
2721 | 768 isAnonymization_ = true; |
769 | |
2309
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
770 removals_.clear(); |
2310
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DicomModification::Clear()
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|
771 clearings_.clear(); |
4678
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|
772 removedRanges_.clear(); |
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|
773 uids_.clear(); |
2309
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|
774 ClearReplacements(); |
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|
775 removePrivateTags_ = true; |
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|
776 level_ = ResourceType_Patient; |
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|
777 uidMap_.clear(); |
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|
778 privateTagsToKeep_.clear(); |
4685
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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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|
779 keepSequences_.clear(); |
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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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changeset
|
780 removeSequences_.clear(); |
2309
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
781 |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
782 switch (version) |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
783 { |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
784 case DicomVersion_2008: |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
785 SetupAnonymization2008(); |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
786 break; |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
787 |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
788 case DicomVersion_2017c: |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
789 SetupAnonymization2017c(); |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
790 break; |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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changeset
|
791 |
4677
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|
792 case DicomVersion_2021b: |
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|
793 SetupAnonymization2021b(); |
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|
794 break; |
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|
795 |
2309
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
796 default: |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
797 throw OrthancException(ErrorCode_ParameterOutOfRange); |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
798 } |
786 | 799 |
800 // Set the PatientIdentityRemoved tag | |
1698
d78b87f93bcf
DicomModification use Json::Value
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changeset
|
801 ReplaceInternal(DicomTag(0x0012, 0x0062), "YES"); |
786 | 802 |
803 // (*) Choose a random patient name and ID | |
4693
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804 uids_.insert(DICOM_TAG_PATIENT_ID); |
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|
805 uids_.insert(DICOM_TAG_PATIENT_NAME); |
4678
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|
806 |
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changeset
|
807 // Sanity check |
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|
808 for (SetOfTags::const_iterator it = uids_.begin(); it != uids_.end(); ++it) |
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|
809 { |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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|
810 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(*it); |
4693
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|
811 if (*it == DICOM_TAG_PATIENT_ID) |
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|
812 { |
4696
dd6274412ff4
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|
813 if (vr != ValueRepresentation_LongString && |
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|
814 vr != ValueRepresentation_NotSupported /* if no dictionary loaded */) |
4693
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|
815 { |
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added routes for bulk anonymization/modification
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|
816 throw OrthancException(ErrorCode_InternalError); |
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|
817 } |
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|
818 } |
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added routes for bulk anonymization/modification
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diff
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|
819 else if (*it == DICOM_TAG_PATIENT_NAME) |
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|
820 { |
4696
dd6274412ff4
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diff
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|
821 if (vr != ValueRepresentation_PersonName && |
dd6274412ff4
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|
822 vr != ValueRepresentation_NotSupported /* if no dictionary loaded */) |
4693
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|
823 { |
45bce660ce3a
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|
824 throw OrthancException(ErrorCode_InternalError); |
45bce660ce3a
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|
825 } |
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added routes for bulk anonymization/modification
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changeset
|
826 } |
45bce660ce3a
added routes for bulk anonymization/modification
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changeset
|
827 else if (vr != ValueRepresentation_UniqueIdentifier && |
45bce660ce3a
added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4691
diff
changeset
|
828 vr != ValueRepresentation_NotSupported /* for older versions of DCMTK */) |
4678
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
829 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
830 throw OrthancException(ErrorCode_InternalError); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
831 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
832 } |
786 | 833 } |
834 | |
835 void DicomModification::Apply(ParsedDicomFile& toModify) | |
836 { | |
837 // Check the request | |
788 | 838 assert(ResourceType_Patient + 1 == ResourceType_Study && |
839 ResourceType_Study + 1 == ResourceType_Series && | |
840 ResourceType_Series + 1 == ResourceType_Instance); | |
786 | 841 |
842 if (IsRemoved(DICOM_TAG_PATIENT_ID) || | |
843 IsRemoved(DICOM_TAG_STUDY_INSTANCE_UID) || | |
844 IsRemoved(DICOM_TAG_SERIES_INSTANCE_UID) || | |
845 IsRemoved(DICOM_TAG_SOP_INSTANCE_UID)) | |
846 { | |
847 throw OrthancException(ErrorCode_BadRequest); | |
848 } | |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
849 |
786 | 850 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
851 // Sanity checks at the patient level |
4693
45bce660ce3a
added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4691
diff
changeset
|
852 bool isReplacedPatientId = (IsReplaced(DICOM_TAG_PATIENT_ID) || |
45bce660ce3a
added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4691
diff
changeset
|
853 uids_.find(DICOM_TAG_PATIENT_ID) != uids_.end()); |
45bce660ce3a
added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4691
diff
changeset
|
854 |
45bce660ce3a
added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4691
diff
changeset
|
855 if (level_ == ResourceType_Patient && !isReplacedPatientId) |
786 | 856 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
857 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
858 "When modifying a patient, her PatientID is required to be modified"); |
786 | 859 } |
860 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
861 if (!allowManualIdentifiers_) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
862 { |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
863 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
864 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
865 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
866 "When modifying a patient, the StudyInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
867 } |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
868 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
869 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
870 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
871 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
872 "When modifying a patient, the SeriesInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
873 } |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
874 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
875 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
876 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
877 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
878 "When modifying a patient, the SopInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
879 } |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
880 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
881 |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
882 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
883 // Sanity checks at the study level |
4693
45bce660ce3a
added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4691
diff
changeset
|
884 if (level_ == ResourceType_Study && isReplacedPatientId) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
885 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
886 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
887 "When modifying a study, the parent PatientID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
888 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
889 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
890 if (!allowManualIdentifiers_) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
891 { |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
892 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
893 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
894 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
895 "When modifying a study, the SeriesInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
896 } |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
897 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
898 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
899 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
900 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
901 "When modifying a study, the SopInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
902 } |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
903 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
904 |
786 | 905 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
906 // Sanity checks at the series level |
4693
45bce660ce3a
added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4691
diff
changeset
|
907 if (level_ == ResourceType_Series && isReplacedPatientId) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
908 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
909 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
910 "When modifying a series, the parent PatientID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
911 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
912 |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
913 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
786 | 914 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
915 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
916 "When modifying a series, the parent StudyInstanceUID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
917 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
918 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
919 if (!allowManualIdentifiers_) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
920 { |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
921 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
922 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
923 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
924 "When modifying a series, the SopInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
925 } |
786 | 926 } |
927 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
928 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
929 // Sanity checks at the instance level |
4693
45bce660ce3a
added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4691
diff
changeset
|
930 if (level_ == ResourceType_Instance && isReplacedPatientId) |
786 | 931 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
932 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
933 "When modifying an instance, the parent PatientID cannot be manually modified"); |
786 | 934 } |
935 | |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
936 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
937 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
938 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
939 "When modifying an instance, the parent StudyInstanceUID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
940 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
941 |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
942 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
943 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
944 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
945 "When modifying an instance, the parent SeriesInstanceUID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
946 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
947 |
2535
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
948 // (0) Create a summary of the source file, if a custom generator |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
949 // is provided |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
950 if (identifierGenerator_ != NULL) |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
951 { |
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4119
diff
changeset
|
952 toModify.ExtractDicomSummary(currentSource_, ORTHANC_MAXIMUM_TAG_LENGTH); |
2535
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
953 } |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
954 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
955 // (1) Make sure the relationships are updated with the ids that we force too |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
956 // i.e: an RT-STRUCT is referencing its own StudyInstanceUID |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
957 if (isAnonymization_ && updateReferencedRelationships_) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
958 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
959 if (IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
960 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
961 std::string original; |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
962 std::string replacement = GetReplacementAsString(DICOM_TAG_STUDY_INSTANCE_UID); |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
963 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_STUDY_INSTANCE_UID); |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
964 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Study); |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
965 } |
2535
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
966 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
967 if (IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
968 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
969 std::string original; |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
970 std::string replacement = GetReplacementAsString(DICOM_TAG_SERIES_INSTANCE_UID); |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
971 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SERIES_INSTANCE_UID); |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
972 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Series); |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
973 } |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
974 |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
975 if (IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
976 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
977 std::string original; |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
978 std::string replacement = GetReplacementAsString(DICOM_TAG_SOP_INSTANCE_UID); |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
979 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SOP_INSTANCE_UID); |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
980 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Instance); |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
981 } |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
982 } |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
983 |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
984 |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
985 // (2) Remove the private tags, if need be |
786 | 986 if (removePrivateTags_) |
987 { | |
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
916
diff
changeset
|
988 toModify.RemovePrivateTags(privateTagsToKeep_); |
786 | 989 } |
990 | |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
991 // (3) Clear the tags specified by the user |
2310
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
992 for (SetOfTags::const_iterator it = clearings_.begin(); |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
993 it != clearings_.end(); ++it) |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
994 { |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
995 toModify.Clear(*it, true /* only clear if the tag exists in the original file */); |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
996 } |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
997 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
998 // (4) Remove the tags specified by the user |
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
916
diff
changeset
|
999 for (SetOfTags::const_iterator it = removals_.begin(); |
786 | 1000 it != removals_.end(); ++it) |
1001 { | |
1002 toModify.Remove(*it); | |
1003 } | |
1004 | |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
1005 // (5) Replace the tags |
786 | 1006 for (Replacements::const_iterator it = replacements_.begin(); |
1007 it != replacements_.end(); ++it) | |
1008 { | |
4685
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1009 assert(it->second != NULL); |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1010 toModify.Replace(it->first, *it->second, true /* decode data URI scheme */, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1011 DicomReplaceMode_InsertIfAbsent, privateCreator_); |
786 | 1012 } |
1013 | |
4691
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1014 // (6) Update the DICOM identifiers |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1015 if (level_ <= ResourceType_Study && |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1016 !IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
786 | 1017 { |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1018 if (keepStudyInstanceUid_) |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1019 { |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1020 LOG(WARNING) << "Modifying a study while keeping its original StudyInstanceUID: This should be avoided!"; |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1021 } |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1022 else |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1023 { |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1024 MapDicomTags(toModify, ResourceType_Study); |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1025 } |
786 | 1026 } |
1027 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1028 if (level_ <= ResourceType_Series && |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1029 !IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
786 | 1030 { |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1031 if (keepSeriesInstanceUid_) |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1032 { |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1033 LOG(WARNING) << "Modifying a series while keeping its original SeriesInstanceUID: This should be avoided!"; |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1034 } |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1035 else |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1036 { |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1037 MapDicomTags(toModify, ResourceType_Series); |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
1038 } |
786 | 1039 } |
1040 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1041 if (level_ <= ResourceType_Instance && // Always true |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
1042 !IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
786 | 1043 { |
3860
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1044 if (keepSopInstanceUid_) |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1045 { |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1046 LOG(WARNING) << "Modifying an instance while keeping its original SOPInstanceUID: This should be avoided!"; |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1047 } |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1048 else |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1049 { |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1050 MapDicomTags(toModify, ResourceType_Instance); |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1051 } |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1052 } |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1053 |
4691
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1054 // (7) Update the "referenced" relationships in the case of an anonymization |
2721 | 1055 if (isAnonymization_) |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1056 { |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1057 RelationshipsVisitor visitor(*this); |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1058 |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1059 if (updateReferencedRelationships_) |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1060 { |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
1061 const_cast<const ParsedDicomFile&>(toModify).Apply(visitor); |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1062 } |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1063 else |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1064 { |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1065 visitor.RemoveRelationships(toModify); |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1066 } |
786 | 1067 } |
4691
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1068 |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1069 // (8) New in Orthanc 1.9.4: Apply modifications to subsequences |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1070 for (ListOfPaths::const_iterator it = removeSequences_.begin(); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1071 it != removeSequences_.end(); ++it) |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1072 { |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1073 assert(it->GetPrefixLength() > 0); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1074 toModify.RemovePath(*it); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1075 } |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1076 |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1077 for (SequenceReplacements::const_iterator it = sequenceReplacements_.begin(); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1078 it != sequenceReplacements_.end(); ++it) |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1079 { |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1080 assert(*it != NULL); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1081 assert((*it)->GetPath().GetPrefixLength() > 0); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1082 toModify.ReplacePath((*it)->GetPath(), (*it)->GetValue(), true /* decode data URI scheme */, |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1083 DicomReplaceMode_InsertIfAbsent, privateCreator_); |
a08ef46c95a1
applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
1084 } |
786 | 1085 } |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1086 |
4297 | 1087 void DicomModification::SetAllowManualIdentifiers(bool check) |
1088 { | |
1089 allowManualIdentifiers_ = check; | |
1090 } | |
1091 | |
1092 bool DicomModification::AreAllowManualIdentifiers() const | |
1093 { | |
1094 return allowManualIdentifiers_; | |
1095 } | |
1096 | |
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1097 |
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1098 static bool IsDatabaseKey(const DicomTag& tag) |
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1099 { |
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1100 return (tag == DICOM_TAG_PATIENT_ID || |
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1101 tag == DICOM_TAG_STUDY_INSTANCE_UID || |
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1102 tag == DICOM_TAG_SERIES_INSTANCE_UID || |
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1103 tag == DICOM_TAG_SOP_INSTANCE_UID); |
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1104 } |
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1105 |
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1106 |
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1107 static void ParseListOfTags(DicomModification& target, |
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1108 const Json::Value& query, |
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1109 DicomModification::TagOperation operation, |
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1110 bool force) |
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1111 { |
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1112 if (!query.isArray()) |
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1113 { |
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1114 throw OrthancException(ErrorCode_BadRequest); |
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1115 } |
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1116 |
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1117 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++) |
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1118 { |
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1119 if (query[i].type() != Json::stringValue) |
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1120 { |
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1121 throw OrthancException(ErrorCode_BadRequest); |
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1122 } |
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1123 |
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1124 std::string name = query[i].asString(); |
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1125 |
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1126 const DicomPath path(DicomPath::Parse(name)); |
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1127 |
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1128 if (path.GetPrefixLength() == 0 && |
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1129 !force && |
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1130 IsDatabaseKey(path.GetFinalTag())) |
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1131 { |
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1132 throw OrthancException(ErrorCode_BadRequest, |
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1133 "Marking tag \"" + name + "\" as to be " + |
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1134 (operation == DicomModification::TagOperation_Keep ? "kept" : "removed") + |
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1135 " requires the \"Force\" option to be set to true"); |
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1136 } |
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1137 |
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1138 switch (operation) |
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1139 { |
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1140 case DicomModification::TagOperation_Keep: |
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1141 target.Keep(path); |
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1142 LOG(TRACE) << "Keep: " << name << " = " << path.Format(); |
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1143 break; |
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1144 |
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1145 case DicomModification::TagOperation_Remove: |
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1146 target.Remove(path); |
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1147 LOG(TRACE) << "Remove: " << name << " = " << path.Format(); |
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1148 break; |
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1149 |
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1150 default: |
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1151 throw OrthancException(ErrorCode_InternalError); |
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1152 } |
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1153 } |
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1154 } |
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1155 |
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1156 |
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1157 static void ParseReplacements(DicomModification& target, |
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1158 const Json::Value& replacements, |
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1159 bool force) |
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1160 { |
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1161 if (!replacements.isObject()) |
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1162 { |
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1163 throw OrthancException(ErrorCode_BadRequest); |
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1164 } |
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1165 |
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1166 Json::Value::Members members = replacements.getMemberNames(); |
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1167 for (size_t i = 0; i < members.size(); i++) |
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1168 { |
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1169 const std::string& name = members[i]; |
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1170 const Json::Value& value = replacements[name]; |
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1171 |
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1172 const DicomPath path(DicomPath::Parse(name)); |
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1173 |
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1174 if (path.GetPrefixLength() == 0 && |
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1175 !force && |
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1176 IsDatabaseKey(path.GetFinalTag())) |
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1177 { |
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1178 throw OrthancException(ErrorCode_BadRequest, |
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1179 "Marking tag \"" + name + "\" as to be replaced " + |
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1180 "requires the \"Force\" option to be set to true"); |
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1181 } |
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1182 |
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1183 target.Replace(path, value, false /* not safe for anonymization */); |
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1184 |
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1185 LOG(TRACE) << "Replace: " << name << " = " << path.Format() |
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1186 << " by: " << value.toStyledString(); |
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1187 } |
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1188 } |
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1189 |
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1190 |
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1191 static bool GetBooleanValue(const std::string& member, |
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1192 const Json::Value& json, |
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1193 bool defaultValue) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1194 { |
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1195 if (!json.isMember(member)) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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1196 { |
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1197 return defaultValue; |
2e6b7862ccf2
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1198 } |
2e6b7862ccf2
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1199 else if (json[member].type() == Json::booleanValue) |
2e6b7862ccf2
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1200 { |
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1201 return json[member].asBool(); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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1202 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1203 else |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1204 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
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2844
diff
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|
1205 throw OrthancException(ErrorCode_BadFileFormat, |
d924f9bb61cc
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Sebastien Jodogne <s.jodogne@gmail.com>
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2844
diff
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|
1206 "Member \"" + member + "\" should be a Boolean value"); |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1207 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1208 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1209 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1210 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1211 void DicomModification::ParseModifyRequest(const Json::Value& request) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1212 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1213 if (!request.isObject()) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1214 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1215 throw OrthancException(ErrorCode_BadFileFormat); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1216 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1217 |
2e6b7862ccf2
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1218 bool force = GetBooleanValue("Force", request, false); |
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1219 |
2e6b7862ccf2
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|
1220 if (GetBooleanValue("RemovePrivateTags", request, false)) |
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1221 { |
2e6b7862ccf2
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1222 SetRemovePrivateTags(true); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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1223 } |
2e6b7862ccf2
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1224 |
2e6b7862ccf2
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|
1225 if (request.isMember("Remove")) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1226 { |
2e6b7862ccf2
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|
1227 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1228 } |
2e6b7862ccf2
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1229 |
2e6b7862ccf2
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1230 if (request.isMember("Replace")) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1231 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1232 ParseReplacements(*this, request["Replace"], force); |
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ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1233 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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1234 |
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ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1235 // The "Keep" operation only makes sense for the tags |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1236 // StudyInstanceUID, SeriesInstanceUID and SOPInstanceUID. Avoid |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1237 // this feature as much as possible, as this breaks the DICOM |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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1238 // model of the real world, except if you know exactly what |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1239 // you're doing! |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1240 if (request.isMember("Keep")) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1241 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1242 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1243 } |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1244 |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1245 // New in Orthanc 1.6.0 |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1246 if (request.isMember("PrivateCreator")) |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
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|
1247 { |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1248 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator"); |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1249 } |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1250 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1251 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1252 |
4693
45bce660ce3a
added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4691
diff
changeset
|
1253 void DicomModification::ParseAnonymizationRequest(bool& patientNameOverridden, |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1254 const Json::Value& request) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1255 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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2506
diff
changeset
|
1256 if (!request.isObject()) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1257 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1258 throw OrthancException(ErrorCode_BadFileFormat); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1259 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1260 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1261 bool force = GetBooleanValue("Force", request, false); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1262 |
4677
521e39b3f2c0
Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4676
diff
changeset
|
1263 // DicomVersion version = DicomVersion_2008; // For Orthanc <= 1.2.0 |
521e39b3f2c0
Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4676
diff
changeset
|
1264 // DicomVersion version = DicomVersion_2017c; // For Orthanc between 1.3.0 and 1.9.3 |
521e39b3f2c0
Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4676
diff
changeset
|
1265 DicomVersion version = DicomVersion_2021b; // For Orthanc >= 1.9.4 |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1266 if (request.isMember("DicomVersion")) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1267 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1268 if (request["DicomVersion"].type() != Json::stringValue) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1269 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1270 throw OrthancException(ErrorCode_BadFileFormat); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1271 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1272 else |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1273 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1274 version = StringToDicomVersion(request["DicomVersion"].asString()); |
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ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1275 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1276 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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changeset
|
1277 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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changeset
|
1278 SetupAnonymization(version); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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changeset
|
1279 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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|
1280 if (GetBooleanValue("KeepPrivateTags", request, false)) |
2e6b7862ccf2
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|
1281 { |
2e6b7862ccf2
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changeset
|
1282 SetRemovePrivateTags(false); |
2e6b7862ccf2
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|
1283 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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changeset
|
1284 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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changeset
|
1285 if (request.isMember("Remove")) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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changeset
|
1286 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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changeset
|
1287 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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changeset
|
1288 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
1289 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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changeset
|
1290 if (request.isMember("Replace")) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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changeset
|
1291 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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changeset
|
1292 ParseReplacements(*this, request["Replace"], force); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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changeset
|
1293 } |
2e6b7862ccf2
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1294 |
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1295 if (request.isMember("Keep")) |
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1296 { |
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1297 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force); |
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1298 } |
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1299 |
4693
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1300 patientNameOverridden = (uids_.find(DICOM_TAG_PATIENT_NAME) == uids_.end()); |
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1301 |
3709
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1302 // New in Orthanc 1.6.0 |
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1303 if (request.isMember("PrivateCreator")) |
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1304 { |
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1305 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator"); |
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1306 } |
2519
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1307 } |
2616
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1308 |
4297 | 1309 void DicomModification::SetDicomIdentifierGenerator(DicomModification::IDicomIdentifierGenerator &generator) |
1310 { | |
1311 identifierGenerator_ = &generator; | |
1312 } | |
1313 | |
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1314 |
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1315 |
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1316 |
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1317 static const char* REMOVE_PRIVATE_TAGS = "RemovePrivateTags"; |
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1318 static const char* LEVEL = "Level"; |
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1319 static const char* ALLOW_MANUAL_IDENTIFIERS = "AllowManualIdentifiers"; |
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1320 static const char* KEEP_STUDY_INSTANCE_UID = "KeepStudyInstanceUID"; |
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1321 static const char* KEEP_SERIES_INSTANCE_UID = "KeepSeriesInstanceUID"; |
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1322 static const char* KEEP_SOP_INSTANCE_UID = "KeepSOPInstanceUID"; |
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1323 static const char* UPDATE_REFERENCED_RELATIONSHIPS = "UpdateReferencedRelationships"; |
2721 | 1324 static const char* IS_ANONYMIZATION = "IsAnonymization"; |
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1325 static const char* REMOVALS = "Removals"; |
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1326 static const char* CLEARINGS = "Clearings"; |
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1327 static const char* PRIVATE_TAGS_TO_KEEP = "PrivateTagsToKeep"; |
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1328 static const char* REPLACEMENTS = "Replacements"; |
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1329 static const char* MAP_PATIENTS = "MapPatients"; |
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1330 static const char* MAP_STUDIES = "MapStudies"; |
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1331 static const char* MAP_SERIES = "MapSeries"; |
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1332 static const char* MAP_INSTANCES = "MapInstances"; |
4687
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1333 static const char* PRIVATE_CREATOR = "PrivateCreator"; // New in Orthanc 1.6.0 |
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1334 static const char* UIDS = "Uids"; // New in Orthanc 1.9.4 |
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1335 static const char* REMOVED_RANGES = "RemovedRanges"; // New in Orthanc 1.9.4 |
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1336 static const char* KEEP_SEQUENCES = "KeepSequences"; // New in Orthanc 1.9.4 |
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1337 static const char* REMOVE_SEQUENCES = "RemoveSequences"; // New in Orthanc 1.9.4 |
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1338 static const char* SEQUENCE_REPLACEMENTS = "SequenceReplacements"; // New in Orthanc 1.9.4 |
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1339 |
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1340 void DicomModification::Serialize(Json::Value& value) const |
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1341 { |
2662
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1342 if (identifierGenerator_ != NULL) |
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1343 { |
2954
d924f9bb61cc
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1344 throw OrthancException(ErrorCode_InternalError, |
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1345 "Cannot serialize a DicomModification with a custom identifier generator"); |
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1346 } |
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1347 |
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1348 value = Json::objectValue; |
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1349 value[REMOVE_PRIVATE_TAGS] = removePrivateTags_; |
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1350 value[LEVEL] = EnumerationToString(level_); |
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1351 value[ALLOW_MANUAL_IDENTIFIERS] = allowManualIdentifiers_; |
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1352 value[KEEP_STUDY_INSTANCE_UID] = keepStudyInstanceUid_; |
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1353 value[KEEP_SERIES_INSTANCE_UID] = keepSeriesInstanceUid_; |
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|
1354 value[KEEP_SOP_INSTANCE_UID] = keepSopInstanceUid_; |
2662
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1355 value[UPDATE_REFERENCED_RELATIONSHIPS] = updateReferencedRelationships_; |
2721 | 1356 value[IS_ANONYMIZATION] = isAnonymization_; |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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3640
diff
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|
1357 value[PRIVATE_CREATOR] = privateCreator_; |
2662
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1358 |
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1359 SerializationToolbox::WriteSetOfTags(value, removals_, REMOVALS); |
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1360 SerializationToolbox::WriteSetOfTags(value, clearings_, CLEARINGS); |
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1361 SerializationToolbox::WriteSetOfTags(value, privateTagsToKeep_, PRIVATE_TAGS_TO_KEEP); |
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1362 |
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1363 Json::Value& tmp = value[REPLACEMENTS]; |
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1364 |
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1365 tmp = Json::objectValue; |
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1366 |
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1367 for (Replacements::const_iterator it = replacements_.begin(); |
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1368 it != replacements_.end(); ++it) |
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1369 { |
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1370 assert(it->second != NULL); |
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1371 tmp[it->first.Format()] = *it->second; |
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1372 } |
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1373 |
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1374 Json::Value& mapPatients = value[MAP_PATIENTS]; |
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1375 Json::Value& mapStudies = value[MAP_STUDIES]; |
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1376 Json::Value& mapSeries = value[MAP_SERIES]; |
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1377 Json::Value& mapInstances = value[MAP_INSTANCES]; |
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1378 |
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1379 mapPatients = Json::objectValue; |
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1380 mapStudies = Json::objectValue; |
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1381 mapSeries = Json::objectValue; |
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1382 mapInstances = Json::objectValue; |
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1383 |
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1384 for (UidMap::const_iterator it = uidMap_.begin(); it != uidMap_.end(); ++it) |
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1385 { |
4200 | 1386 Json::Value* tmp2 = NULL; |
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1387 |
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1388 switch (it->first.first) |
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1389 { |
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1390 case ResourceType_Patient: |
4200 | 1391 tmp2 = &mapPatients; |
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1392 break; |
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1393 |
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1394 case ResourceType_Study: |
4200 | 1395 tmp2 = &mapStudies; |
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1396 break; |
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1397 |
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1398 case ResourceType_Series: |
4200 | 1399 tmp2 = &mapSeries; |
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1400 break; |
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1401 |
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1402 case ResourceType_Instance: |
4200 | 1403 tmp2 = &mapInstances; |
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1404 break; |
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1405 |
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1406 default: |
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1407 throw OrthancException(ErrorCode_InternalError); |
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1408 } |
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|
1409 |
4200 | 1410 assert(tmp2 != NULL); |
1411 (*tmp2) [it->first.second] = it->second; | |
2662
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1412 } |
4678
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1413 |
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1414 // New in Orthanc 1.9.4 |
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|
1415 SerializationToolbox::WriteSetOfTags(value, uids_, UIDS); |
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1416 |
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1417 // New in Orthanc 1.9.4 |
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1418 Json::Value ranges = Json::arrayValue; |
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1419 |
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1420 for (RemovedRanges::const_iterator it = removedRanges_.begin(); it != removedRanges_.end(); ++it) |
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1421 { |
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1422 Json::Value item = Json::arrayValue; |
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1423 item.append(it->GetGroupFrom()); |
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|
1424 item.append(it->GetGroupTo()); |
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1425 item.append(it->GetElementFrom()); |
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1426 item.append(it->GetElementTo()); |
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1427 ranges.append(item); |
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1428 } |
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1429 |
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1430 value[REMOVED_RANGES] = ranges; |
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1431 |
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|
1432 // New in Orthanc 1.9.4 |
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1433 Json::Value lst = Json::arrayValue; |
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1434 for (ListOfPaths::const_iterator it = keepSequences_.begin(); it != keepSequences_.end(); ++it) |
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1435 { |
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1436 lst.append(it->Format()); |
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|
1437 } |
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1438 |
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|
1439 value[KEEP_SEQUENCES] = lst; |
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1440 |
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|
1441 // New in Orthanc 1.9.4 |
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1442 lst = Json::arrayValue; |
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1443 for (ListOfPaths::const_iterator it = removeSequences_.begin(); it != removeSequences_.end(); ++it) |
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1444 { |
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1445 assert(it->GetPrefixLength() > 0); |
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1446 lst.append(it->Format()); |
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1447 } |
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1448 |
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1449 value[REMOVE_SEQUENCES] = lst; |
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1450 |
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1451 // New in Orthanc 1.9.4 |
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1452 lst = Json::objectValue; |
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1453 for (SequenceReplacements::const_iterator it = sequenceReplacements_.begin(); it != sequenceReplacements_.end(); ++it) |
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1454 { |
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1455 assert(*it != NULL); |
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1456 assert((*it)->GetPath().GetPrefixLength() > 0); |
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1457 lst[(*it)->GetPath().Format()] = (*it)->GetValue(); |
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1458 } |
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1459 |
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1460 value[SEQUENCE_REPLACEMENTS] = lst; |
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1461 } |
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1462 |
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1463 void DicomModification::UnserializeUidMap(ResourceType level, |
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1464 const Json::Value& serialized, |
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1465 const char* field) |
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1466 { |
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1467 if (!serialized.isMember(field) || |
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1468 serialized[field].type() != Json::objectValue) |
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1469 { |
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1470 throw OrthancException(ErrorCode_BadFileFormat); |
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1471 } |
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1472 |
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1473 Json::Value::Members names = serialized[field].getMemberNames(); |
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1474 |
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1475 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it) |
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1476 { |
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1477 const Json::Value& value = serialized[field][*it]; |
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1478 |
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1479 if (value.type() != Json::stringValue) |
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1480 { |
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1481 throw OrthancException(ErrorCode_BadFileFormat); |
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1482 } |
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1483 else |
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1484 { |
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1485 uidMap_[std::make_pair(level, *it)] = value.asString(); |
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1486 } |
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1487 } |
2655 | 1488 } |
1489 | |
1490 | |
2666
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1491 DicomModification::DicomModification(const Json::Value& serialized) : |
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1492 identifierGenerator_(NULL) |
2655 | 1493 { |
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1494 removePrivateTags_ = SerializationToolbox::ReadBoolean(serialized, REMOVE_PRIVATE_TAGS); |
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1495 level_ = StringToResourceType(SerializationToolbox::ReadString(serialized, LEVEL).c_str()); |
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1496 allowManualIdentifiers_ = SerializationToolbox::ReadBoolean(serialized, ALLOW_MANUAL_IDENTIFIERS); |
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1497 keepStudyInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_STUDY_INSTANCE_UID); |
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1498 keepSeriesInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SERIES_INSTANCE_UID); |
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1499 updateReferencedRelationships_ = SerializationToolbox::ReadBoolean |
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1500 (serialized, UPDATE_REFERENCED_RELATIONSHIPS); |
2721 | 1501 isAnonymization_ = SerializationToolbox::ReadBoolean(serialized, IS_ANONYMIZATION); |
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1502 |
4688
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1503 if (serialized.isMember(KEEP_SOP_INSTANCE_UID)) |
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1504 { |
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1505 keepSopInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SOP_INSTANCE_UID); |
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1506 } |
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1507 else |
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1508 { |
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1509 /** |
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1510 * Compatibility with jobs serialized using Orthanc between |
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1511 * 1.5.0 and 1.6.1. This compatibility was broken between 1.7.0 |
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1512 * and 1.9.3: Indeed, an exception was thrown in "ReadBoolean()" |
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1513 * if "KEEP_SOP_INSTANCE_UID" was absent, because of changeset: |
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1514 * https://hg.orthanc-server.com/orthanc/rev/3860 |
177ad026d219
backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4687
diff
changeset
|
1515 **/ |
177ad026d219
backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4687
diff
changeset
|
1516 keepSopInstanceUid_ = false; |
177ad026d219
backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4687
diff
changeset
|
1517 } |
177ad026d219
backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4687
diff
changeset
|
1518 |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1519 if (serialized.isMember(PRIVATE_CREATOR)) |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1520 { |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1521 privateCreator_ = SerializationToolbox::ReadString(serialized, PRIVATE_CREATOR); |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1522 } |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1523 |
2662
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1524 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1525 SerializationToolbox::ReadSetOfTags(clearings_, serialized, CLEARINGS); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1526 SerializationToolbox::ReadSetOfTags(privateTagsToKeep_, serialized, PRIVATE_TAGS_TO_KEEP); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1527 |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1528 if (!serialized.isMember(REPLACEMENTS) || |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1529 serialized[REPLACEMENTS].type() != Json::objectValue) |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1530 { |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1531 throw OrthancException(ErrorCode_BadFileFormat); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1532 } |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1533 |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1534 Json::Value::Members names = serialized[REPLACEMENTS].getMemberNames(); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1535 |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1536 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it) |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1537 { |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1538 DicomTag tag(0, 0); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1539 if (!DicomTag::ParseHexadecimal(tag, it->c_str())) |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1540 { |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1541 throw OrthancException(ErrorCode_BadFileFormat); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1542 } |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1543 else |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1544 { |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1545 const Json::Value& value = serialized[REPLACEMENTS][*it]; |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1546 replacements_.insert(std::make_pair(tag, new Json::Value(value))); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1547 } |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1548 } |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1549 |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1550 UnserializeUidMap(ResourceType_Patient, serialized, MAP_PATIENTS); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1551 UnserializeUidMap(ResourceType_Study, serialized, MAP_STUDIES); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1552 UnserializeUidMap(ResourceType_Series, serialized, MAP_SERIES); |
47d812308d63
serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2655
diff
changeset
|
1553 UnserializeUidMap(ResourceType_Instance, serialized, MAP_INSTANCES); |
4678
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1554 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1555 // New in Orthanc 1.9.4 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1556 if (serialized.isMember(UIDS)) // Backward compatibility with Orthanc <= 1.9.3 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1557 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1558 SerializationToolbox::ReadSetOfTags(uids_, serialized, UIDS); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1559 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1560 else |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1561 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1562 SetupUidsFromOrthanc_1_9_3(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1563 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1564 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1565 // New in Orthanc 1.9.4 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1566 removedRanges_.clear(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1567 if (serialized.isMember(REMOVED_RANGES)) // Backward compatibility with Orthanc <= 1.9.3 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1568 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1569 const Json::Value& ranges = serialized[REMOVED_RANGES]; |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1570 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1571 if (ranges.type() != Json::arrayValue) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1572 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1573 throw OrthancException(ErrorCode_BadFileFormat); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1574 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1575 else |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1576 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1577 for (Json::Value::ArrayIndex i = 0; i < ranges.size(); i++) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1578 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1579 if (ranges[i].type() != Json::arrayValue || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1580 ranges[i].size() != 4 || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1581 !ranges[i][0].isUInt() || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1582 !ranges[i][1].isUInt() || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1583 !ranges[i][2].isUInt() || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1584 !ranges[i][3].isUInt()) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1585 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1586 throw OrthancException(ErrorCode_BadFileFormat); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1587 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1588 else |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1589 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1590 Json::LargestUInt groupFrom = ranges[i][0].asUInt(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1591 Json::LargestUInt groupTo = ranges[i][1].asUInt(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1592 Json::LargestUInt elementFrom = ranges[i][2].asUInt(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1593 Json::LargestUInt elementTo = ranges[i][3].asUInt(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1594 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1595 if (groupFrom > groupTo || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1596 elementFrom > elementTo || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1597 groupTo > 0xffffu || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1598 elementTo > 0xffffu) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1599 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1600 throw OrthancException(ErrorCode_BadFileFormat); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1601 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1602 else |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1603 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1604 removedRanges_.push_back(DicomTagRange(groupFrom, groupTo, elementFrom, elementTo)); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1605 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1606 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1607 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1608 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1609 } |
4687
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1610 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1611 // New in Orthanc 1.9.4 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1612 if (serialized.isMember(KEEP_SEQUENCES)) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1613 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1614 const Json::Value& keep = serialized[KEEP_SEQUENCES]; |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1615 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1616 if (keep.type() != Json::arrayValue) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1617 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1618 throw OrthancException(ErrorCode_BadFileFormat); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1619 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1620 else |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1621 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1622 for (Json::Value::ArrayIndex i = 0; i < keep.size(); i++) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1623 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1624 if (keep[i].type() != Json::stringValue) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1625 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1626 throw OrthancException(ErrorCode_BadFileFormat); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1627 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1628 else |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1629 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1630 keepSequences_.push_back(DicomPath::Parse(keep[i].asString())); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1631 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1632 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1633 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1634 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1635 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1636 // New in Orthanc 1.9.4 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1637 if (serialized.isMember(REMOVE_SEQUENCES)) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1638 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1639 const Json::Value& remove = serialized[REMOVE_SEQUENCES]; |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1640 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1641 if (remove.type() != Json::arrayValue) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1642 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1643 throw OrthancException(ErrorCode_BadFileFormat); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1644 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1645 else |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1646 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1647 for (Json::Value::ArrayIndex i = 0; i < remove.size(); i++) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1648 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1649 if (remove[i].type() != Json::stringValue) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1650 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1651 throw OrthancException(ErrorCode_BadFileFormat); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1652 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1653 else |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1654 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1655 removeSequences_.push_back(DicomPath::Parse(remove[i].asString())); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1656 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1657 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1658 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1659 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1660 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1661 // New in Orthanc 1.9.4 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1662 if (serialized.isMember(SEQUENCE_REPLACEMENTS)) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1663 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1664 const Json::Value& replace = serialized[SEQUENCE_REPLACEMENTS]; |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1665 |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1666 if (replace.type() != Json::objectValue) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1667 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1668 throw OrthancException(ErrorCode_BadFileFormat); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1669 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1670 else |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1671 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1672 Json::Value::Members members = replace.getMemberNames(); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1673 for (size_t i = 0; i < members.size(); i++) |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1674 { |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1675 sequenceReplacements_.push_back( |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1676 new SequenceReplacement(DicomPath::Parse(members[i]), replace[members[i]])); |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1677 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1678 } |
fcd2dc7c8f31
"Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4685
diff
changeset
|
1679 } |
2616
2f3007bf0708
event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2535
diff
changeset
|
1680 } |
4297 | 1681 |
1682 | |
1683 void DicomModification::SetPrivateCreator(const std::string &privateCreator) | |
1684 { | |
1685 privateCreator_ = privateCreator; | |
1686 } | |
1687 | |
1688 const std::string &DicomModification::GetPrivateCreator() const | |
1689 { | |
1690 return privateCreator_; | |
1691 } | |
4685
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1692 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1693 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1694 void DicomModification::Keep(const DicomPath& path) |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1695 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1696 if (path.GetPrefixLength() == 0) |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1697 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1698 Keep(path.GetFinalTag()); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1699 } |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1700 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1701 keepSequences_.push_back(path); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1702 MarkNotOrthancAnonymization(); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1703 } |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1704 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1705 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1706 void DicomModification::Remove(const DicomPath& path) |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1707 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1708 if (path.GetPrefixLength() == 0) |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1709 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1710 Remove(path.GetFinalTag()); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1711 } |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1712 else |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1713 { |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1714 removeSequences_.push_back(path); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1715 MarkNotOrthancAnonymization(); |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1716 } |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1717 } |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1718 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1719 |
693f049729ba
New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4684
diff
changeset
|
1720 void DicomModification::Replace(const DicomPath& path, |
693f049729ba
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1721 const Json::Value& value, |
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1722 bool safeForAnonymization) |
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parents:
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1723 { |
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1724 if (path.GetPrefixLength() == 0) |
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parents:
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1725 { |
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1726 Replace(path.GetFinalTag(), value, safeForAnonymization); |
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parents:
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1727 } |
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1728 else |
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parents:
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1729 { |
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1730 sequenceReplacements_.push_back(new SequenceReplacement(path, value)); |
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parents:
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1731 |
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parents:
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1732 if (!safeForAnonymization) |
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parents:
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1733 { |
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parents:
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1734 MarkNotOrthancAnonymization(); |
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parents:
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1735 } |
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New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1736 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1737 } |
786 | 1738 } |