Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/DicomModification.cpp @ 4684:e3810750dc9d
simplified DicomModification::RelationshipsVisitor
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 08 Jun 2021 14:42:09 +0200 |
parents | 2e850edf03d6 |
children | 693f049729ba |
rev | line source |
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786 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
786 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
786 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
786 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
786 | 20 **/ |
21 | |
22 | |
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23 #include "../PrecompiledHeaders.h" |
786 | 24 #include "DicomModification.h" |
25 | |
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26 #include "../Compatibility.h" |
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27 #include "../Logging.h" |
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28 #include "../OrthancException.h" |
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29 #include "../SerializationToolbox.h" |
790 | 30 #include "FromDcmtkBridge.h" |
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31 #include "ITagVisitor.h" |
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33 #include <memory> // For std::unique_ptr |
795 | 34 |
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35 |
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36 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2008 = |
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37 "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1"; |
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38 |
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39 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2017c = |
2314 | 40 "Orthanc " ORTHANC_VERSION " - PS 3.15-2017c Table E.1-1 Basic Profile"; |
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41 |
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42 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2021b = |
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43 "Orthanc " ORTHANC_VERSION " - PS 3.15-2021b Table E.1-1 Basic Profile"; |
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44 |
786 | 45 namespace Orthanc |
46 { | |
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47 DicomModification::DicomTagRange::DicomTagRange(uint16_t groupFrom, |
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48 uint16_t groupTo, |
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49 uint16_t elementFrom, |
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50 uint16_t elementTo) : |
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51 groupFrom_(groupFrom), |
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52 groupTo_(groupTo), |
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53 elementFrom_(elementFrom), |
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54 elementTo_(elementTo) |
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55 { |
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56 } |
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57 |
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58 |
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59 bool DicomModification::DicomTagRange::Contains(const DicomTag& tag) const |
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60 { |
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61 return (tag.GetGroup() >= groupFrom_ && |
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62 tag.GetGroup() <= groupTo_ && |
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63 tag.GetElement() >= elementFrom_ && |
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64 tag.GetElement() <= elementTo_); |
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65 } |
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66 |
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67 |
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68 class DicomModification::RelationshipsVisitor : public ITagVisitor |
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69 { |
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70 private: |
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71 DicomModification& that_; |
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72 |
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73 // This method is only applicable to first-level tags |
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74 bool IsManuallyModified(const DicomTag& tag) const |
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75 { |
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76 return (that_.IsCleared(tag) || |
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77 that_.IsRemoved(tag) || |
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78 that_.IsReplaced(tag)); |
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79 } |
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80 |
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81 public: |
4200 | 82 explicit RelationshipsVisitor(DicomModification& that) : |
83 that_(that) | |
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84 { |
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85 } |
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86 |
3195 | 87 virtual void VisitNotSupported(const std::vector<DicomTag>& parentTags, |
88 const std::vector<size_t>& parentIndexes, | |
89 const DicomTag& tag, | |
90 ValueRepresentation vr) | |
91 { | |
92 } | |
93 | |
94 virtual void VisitEmptySequence(const std::vector<DicomTag>& parentTags, | |
95 const std::vector<size_t>& parentIndexes, | |
96 const DicomTag& tag) | |
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97 { |
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98 } |
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99 |
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100 virtual void VisitBinary(const std::vector<DicomTag>& parentTags, |
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101 const std::vector<size_t>& parentIndexes, |
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102 const DicomTag& tag, |
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103 ValueRepresentation vr, |
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104 const void* data, |
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105 size_t size) |
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106 { |
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107 } |
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108 |
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109 virtual void VisitIntegers(const std::vector<DicomTag>& parentTags, |
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110 const std::vector<size_t>& parentIndexes, |
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111 const DicomTag& tag, |
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112 ValueRepresentation vr, |
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113 const std::vector<int64_t>& values) |
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114 { |
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115 } |
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116 |
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117 virtual void VisitDoubles(const std::vector<DicomTag>& parentTags, |
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118 const std::vector<size_t>& parentIndexes, |
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119 const DicomTag& tag, |
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120 ValueRepresentation vr, |
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121 const std::vector<double>& value) |
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122 { |
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123 } |
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124 |
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125 virtual void VisitAttributes(const std::vector<DicomTag>& parentTags, |
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126 const std::vector<size_t>& parentIndexes, |
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127 const DicomTag& tag, |
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128 const std::vector<DicomTag>& value) |
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129 { |
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130 } |
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131 |
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132 virtual Action VisitString(std::string& newValue, |
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133 const std::vector<DicomTag>& parentTags, |
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134 const std::vector<size_t>& parentIndexes, |
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135 const DicomTag& tag, |
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136 ValueRepresentation vr, |
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137 const std::string& value) |
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138 { |
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139 /** |
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140 * Note that all the tags in "uids_" have the VR UI (unique |
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141 * identifier), and are considered as strings. |
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142 * |
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143 * Also, the tags "SOP Instance UID", "Series Instance UID" and |
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144 * "Study Instance UID" are *never* included in "uids_", as they |
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145 * are separately handed by "MapDicomTags()". |
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146 **/ |
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147 |
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148 assert(that_.uids_.find(DICOM_TAG_STUDY_INSTANCE_UID) == that_.uids_.end()); |
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149 assert(that_.uids_.find(DICOM_TAG_SERIES_INSTANCE_UID) == that_.uids_.end()); |
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150 assert(that_.uids_.find(DICOM_TAG_SOP_INSTANCE_UID) == that_.uids_.end()); |
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151 |
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152 if (parentTags.empty()) |
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153 { |
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154 // We are on a first-level tag |
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155 if (that_.uids_.find(tag) != that_.uids_.end() && |
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156 !IsManuallyModified(tag)) |
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157 { |
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158 // This is a first-level UID tag that must be anonymized |
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159 assert(vr == ValueRepresentation_UniqueIdentifier || |
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160 vr == ValueRepresentation_NotSupported /* for older versions of DCMTK */); |
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161 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance); |
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162 return Action_Replace; |
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163 } |
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164 else |
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165 { |
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166 return Action_None; |
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167 } |
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168 } |
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169 else |
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170 { |
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171 // We are within a sequence |
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172 if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
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173 { |
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174 newValue = that_.MapDicomIdentifier(value, ResourceType_Study); |
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175 return Action_Replace; |
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176 } |
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177 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
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178 { |
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179 newValue = that_.MapDicomIdentifier(value, ResourceType_Series); |
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180 return Action_Replace; |
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181 } |
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182 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
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183 { |
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184 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance); |
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185 return Action_Replace; |
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186 } |
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187 else if (that_.uids_.find(tag) != that_.uids_.end()) |
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188 { |
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189 assert(vr == ValueRepresentation_UniqueIdentifier || |
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190 vr == ValueRepresentation_NotSupported /* for older versions of DCMTK */); |
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191 |
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192 if (parentTags.size() == 2 && |
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193 parentTags[0] == DICOM_TAG_REFERENCED_FRAME_OF_REFERENCE_SEQUENCE && |
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194 parentTags[1] == DICOM_TAG_RT_REFERENCED_STUDY_SEQUENCE && |
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195 tag == DICOM_TAG_REFERENCED_SOP_INSTANCE_UID) |
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196 { |
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197 /** |
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198 * In RT-STRUCT, this ReferencedSOPInstanceUID is actually |
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199 * referencing a StudyInstanceUID !! (observed in many |
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200 * data sets including: |
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201 * https://wiki.cancerimagingarchive.net/display/Public/Lung+CT+Segmentation+Challenge+2017) |
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202 * Tested in "test_anonymize_relationships_5". Introduced |
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203 * in: https://hg.orthanc-server.com/orthanc/rev/3513 |
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204 **/ |
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205 newValue = that_.MapDicomIdentifier(value, ResourceType_Study); |
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206 } |
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207 else |
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208 { |
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209 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance); |
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210 } |
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211 |
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212 return Action_Replace; |
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213 } |
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214 else |
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215 { |
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216 return Action_None; |
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217 } |
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218 } |
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219 } |
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220 |
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221 void RemoveRelationships(ParsedDicomFile& dicom) const |
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222 { |
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223 for (SetOfTags::const_iterator it = that_.uids_.begin(); it != that_.uids_.end(); ++it) |
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224 { |
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225 assert(*it != DICOM_TAG_STUDY_INSTANCE_UID && |
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226 *it != DICOM_TAG_SERIES_INSTANCE_UID && |
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227 *it != DICOM_TAG_SOP_INSTANCE_UID); |
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228 |
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229 if (!IsManuallyModified(*it)) |
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230 { |
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231 dicom.Remove(*it); |
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232 } |
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233 } |
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234 |
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235 // The only two sequences with to the "X/Z/U*" rule in the |
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236 // basic profile. They were already present in Orthanc 1.9.3. |
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237 if (!IsManuallyModified(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE)) |
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238 { |
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239 dicom.Remove(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE); |
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240 } |
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241 |
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242 if (!IsManuallyModified(DICOM_TAG_SOURCE_IMAGE_SEQUENCE)) |
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243 { |
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244 dicom.Remove(DICOM_TAG_SOURCE_IMAGE_SEQUENCE); |
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245 } |
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246 } |
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247 }; |
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248 |
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249 |
2323 | 250 bool DicomModification::CancelReplacement(const DicomTag& tag) |
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251 { |
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252 Replacements::iterator it = replacements_.find(tag); |
2323 | 253 |
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254 if (it != replacements_.end()) |
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255 { |
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256 delete it->second; |
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257 replacements_.erase(it); |
2323 | 258 return true; |
259 } | |
260 else | |
261 { | |
262 return false; | |
263 } | |
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264 } |
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265 |
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266 |
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267 void DicomModification::ReplaceInternal(const DicomTag& tag, |
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268 const Json::Value& value) |
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269 { |
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270 Replacements::iterator it = replacements_.find(tag); |
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271 |
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272 if (it != replacements_.end()) |
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273 { |
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274 delete it->second; |
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275 it->second = NULL; // In the case of an exception during the clone |
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276 it->second = new Json::Value(value); // Clone |
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277 } |
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278 else |
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279 { |
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280 replacements_[tag] = new Json::Value(value); // Clone |
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281 } |
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282 } |
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283 |
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284 |
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285 void DicomModification::ClearReplacements() |
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286 { |
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287 for (Replacements::iterator it = replacements_.begin(); |
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288 it != replacements_.end(); ++it) |
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289 { |
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290 delete it->second; |
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291 } |
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292 |
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293 replacements_.clear(); |
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294 } |
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295 |
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296 |
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297 void DicomModification::MarkNotOrthancAnonymization() |
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298 { |
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299 Replacements::iterator it = replacements_.find(DICOM_TAG_DEIDENTIFICATION_METHOD); |
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300 |
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301 if (it != replacements_.end() && |
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302 (it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2008 || |
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303 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2017c || |
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304 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2021b)) |
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305 { |
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306 delete it->second; |
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307 replacements_.erase(it); |
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308 } |
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309 } |
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310 |
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311 void DicomModification::RegisterMappedDicomIdentifier(const std::string& original, |
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312 const std::string& mapped, |
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313 ResourceType level) |
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314 { |
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315 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, original)); |
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316 |
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317 if (previous == uidMap_.end()) |
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318 { |
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319 uidMap_.insert(std::make_pair(std::make_pair(level, original), mapped)); |
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320 } |
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321 } |
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322 |
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323 std::string DicomModification::MapDicomIdentifier(const std::string& original, |
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324 ResourceType level) |
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325 { |
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326 const std::string stripped = Toolbox::StripSpaces(original); |
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327 |
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328 std::string mapped; |
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329 |
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330 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, stripped)); |
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331 |
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332 if (previous == uidMap_.end()) |
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333 { |
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334 if (identifierGenerator_ == NULL) |
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335 { |
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336 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level); |
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337 } |
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338 else |
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339 { |
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340 if (!identifierGenerator_->Apply(mapped, stripped, level, currentSource_)) |
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341 { |
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342 throw OrthancException(ErrorCode_InternalError, |
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343 "Unable to generate an anonymized ID"); |
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344 } |
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345 } |
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346 |
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347 uidMap_.insert(std::make_pair(std::make_pair(level, stripped), mapped)); |
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348 } |
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349 else |
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350 { |
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351 mapped = previous->second; |
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352 } |
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353 |
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354 return mapped; |
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355 } |
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356 |
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357 |
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358 void DicomModification::MapDicomTags(ParsedDicomFile& dicom, |
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359 ResourceType level) |
786 | 360 { |
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361 std::unique_ptr<DicomTag> tag; |
786 | 362 |
363 switch (level) | |
364 { | |
788 | 365 case ResourceType_Study: |
786 | 366 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID)); |
367 break; | |
368 | |
788 | 369 case ResourceType_Series: |
786 | 370 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID)); |
371 break; | |
372 | |
788 | 373 case ResourceType_Instance: |
786 | 374 tag.reset(new DicomTag(DICOM_TAG_SOP_INSTANCE_UID)); |
375 break; | |
376 | |
377 default: | |
378 throw OrthancException(ErrorCode_InternalError); | |
379 } | |
380 | |
381 std::string original; | |
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382 if (!const_cast<const ParsedDicomFile&>(dicom).GetTagValue(original, *tag)) |
786 | 383 { |
384 original = ""; | |
385 } | |
386 | |
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387 std::string mapped = MapDicomIdentifier(original, level); |
786 | 388 |
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389 dicom.Replace(*tag, mapped, |
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390 false /* don't try and decode data URI scheme for UIDs */, |
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391 DicomReplaceMode_InsertIfAbsent, privateCreator_); |
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392 } |
786 | 393 |
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394 |
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395 DicomModification::DicomModification() : |
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396 removePrivateTags_(false), |
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397 level_(ResourceType_Instance), |
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398 allowManualIdentifiers_(true), |
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399 keepStudyInstanceUid_(false), |
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400 keepSeriesInstanceUid_(false), |
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401 keepSopInstanceUid_(false), |
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402 updateReferencedRelationships_(true), |
2721 | 403 isAnonymization_(false), |
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404 //privateCreator_("PrivateCreator"), |
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405 identifierGenerator_(NULL) |
786 | 406 { |
407 } | |
408 | |
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409 DicomModification::~DicomModification() |
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410 { |
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411 ClearReplacements(); |
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412 } |
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413 |
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414 void DicomModification::Keep(const DicomTag& tag) |
786 | 415 { |
2323 | 416 bool wasRemoved = IsRemoved(tag); |
417 bool wasCleared = IsCleared(tag); | |
418 | |
786 | 419 removals_.erase(tag); |
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420 clearings_.erase(tag); |
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421 uids_.erase(tag); |
2323 | 422 |
423 bool wasReplaced = CancelReplacement(tag); | |
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424 |
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425 if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
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426 { |
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427 keepStudyInstanceUid_ = true; |
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428 } |
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429 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
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430 { |
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431 keepSeriesInstanceUid_ = true; |
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432 } |
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433 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
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434 { |
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435 keepSopInstanceUid_ = true; |
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436 } |
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437 else if (tag.IsPrivate()) |
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438 { |
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439 privateTagsToKeep_.insert(tag); |
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440 } |
2323 | 441 else if (!wasRemoved && |
442 !wasReplaced && | |
443 !wasCleared) | |
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444 { |
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445 LOG(WARNING) << "Marking this tag as to be kept has no effect: " << tag.Format(); |
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446 } |
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447 |
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448 MarkNotOrthancAnonymization(); |
786 | 449 } |
450 | |
451 void DicomModification::Remove(const DicomTag& tag) | |
452 { | |
453 removals_.insert(tag); | |
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454 clearings_.erase(tag); |
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455 uids_.erase(tag); |
2323 | 456 CancelReplacement(tag); |
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457 privateTagsToKeep_.erase(tag); |
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458 |
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459 MarkNotOrthancAnonymization(); |
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460 } |
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461 |
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462 void DicomModification::Clear(const DicomTag& tag) |
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463 { |
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464 removals_.erase(tag); |
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465 clearings_.insert(tag); |
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466 uids_.erase(tag); |
2323 | 467 CancelReplacement(tag); |
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468 privateTagsToKeep_.erase(tag); |
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469 |
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470 MarkNotOrthancAnonymization(); |
786 | 471 } |
472 | |
473 bool DicomModification::IsRemoved(const DicomTag& tag) const | |
474 { | |
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475 if (removals_.find(tag) != removals_.end()) |
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476 { |
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477 return true; |
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478 } |
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479 else |
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480 { |
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481 for (RemovedRanges::const_iterator it = removedRanges_.begin(); |
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482 it != removedRanges_.end(); it++) |
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483 { |
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484 if (it->Contains(tag)) |
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485 { |
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486 return true; |
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487 } |
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488 } |
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489 |
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490 return false; |
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491 } |
786 | 492 } |
493 | |
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494 bool DicomModification::IsCleared(const DicomTag& tag) const |
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495 { |
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496 return clearings_.find(tag) != clearings_.end(); |
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497 } |
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498 |
786 | 499 void DicomModification::Replace(const DicomTag& tag, |
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500 const Json::Value& value, |
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501 bool safeForAnonymization) |
786 | 502 { |
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503 clearings_.erase(tag); |
786 | 504 removals_.erase(tag); |
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505 uids_.erase(tag); |
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506 privateTagsToKeep_.erase(tag); |
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507 ReplaceInternal(tag, value); |
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508 |
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509 if (!safeForAnonymization) |
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510 { |
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511 MarkNotOrthancAnonymization(); |
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512 } |
786 | 513 } |
514 | |
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515 |
786 | 516 bool DicomModification::IsReplaced(const DicomTag& tag) const |
517 { | |
518 return replacements_.find(tag) != replacements_.end(); | |
519 } | |
520 | |
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521 const Json::Value& DicomModification::GetReplacement(const DicomTag& tag) const |
786 | 522 { |
523 Replacements::const_iterator it = replacements_.find(tag); | |
524 | |
525 if (it == replacements_.end()) | |
526 { | |
527 throw OrthancException(ErrorCode_InexistentItem); | |
528 } | |
529 else | |
530 { | |
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531 return *it->second; |
786 | 532 } |
533 } | |
534 | |
1698
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535 |
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536 std::string DicomModification::GetReplacementAsString(const DicomTag& tag) const |
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537 { |
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538 const Json::Value& json = GetReplacement(tag); |
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539 |
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540 if (json.type() != Json::stringValue) |
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541 { |
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542 throw OrthancException(ErrorCode_BadParameterType); |
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543 } |
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544 else |
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545 { |
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546 return json.asString(); |
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547 } |
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548 } |
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549 |
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550 |
786 | 551 void DicomModification::SetRemovePrivateTags(bool removed) |
552 { | |
553 removePrivateTags_ = removed; | |
1279
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554 |
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555 if (!removed) |
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556 { |
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557 MarkNotOrthancAnonymization(); |
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558 } |
786 | 559 } |
560 | |
4297 | 561 bool DicomModification::ArePrivateTagsRemoved() const |
562 { | |
563 return removePrivateTags_; | |
564 } | |
565 | |
788 | 566 void DicomModification::SetLevel(ResourceType level) |
786 | 567 { |
568 uidMap_.clear(); | |
569 level_ = level; | |
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570 |
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571 if (level != ResourceType_Patient) |
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572 { |
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573 MarkNotOrthancAnonymization(); |
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574 } |
786 | 575 } |
576 | |
4297 | 577 ResourceType DicomModification::GetLevel() const |
578 { | |
579 return level_; | |
580 } | |
581 | |
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582 |
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583 static void SetupUidsFromOrthancInternal(std::set<DicomTag>& uids, |
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584 std::set<DicomTag>& removals, |
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585 const DicomTag& tag) |
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586 { |
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587 uids.insert(tag); |
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588 removals.erase(tag); // Necessary if unserializing a job from 1.9.3 |
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589 } |
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590 |
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591 |
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592 void DicomModification::SetupUidsFromOrthanc_1_9_3() |
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593 { |
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594 /** |
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595 * Values below come from the hardcoded UID of Orthanc 1.9.3 |
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596 * in DicomModification::RelationshipsVisitor::VisitString() and |
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597 * DicomModification::RelationshipsVisitor::RemoveRelationships() |
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598 * https://hg.orthanc-server.com/orthanc/file/Orthanc-1.9.3/OrthancFramework/Sources/DicomParsing/DicomModification.cpp#l117 |
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599 **/ |
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600 uids_.clear(); |
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601 |
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602 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0008, 0x0014)); // Instance Creator UID <= from SetupAnonymization2008() |
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603 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID <= from VisitString() + RemoveRelationships() |
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604 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0020, 0x0052)); // Frame of Reference UID <= from VisitString() + RemoveRelationships() |
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605 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID <= from SetupAnonymization2008() |
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606 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0040, 0xa124)); // UID <= from SetupAnonymization2008() |
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607 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0088, 0x0140)); // Storage Media File-set UID <= from SetupAnonymization2008() |
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608 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID <= from VisitString() + RemoveRelationships() |
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609 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID <= from VisitString() + RemoveRelationships() |
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610 } |
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611 |
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612 |
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613 void DicomModification::SetupAnonymization2008() |
786 | 614 { |
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615 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles |
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616 // https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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617 |
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618 SetupUidsFromOrthanc_1_9_3(); |
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619 |
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620 //uids_.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID => set in SetupUidsFromOrthanc_1_9_3() |
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621 //removals_.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set in Apply() |
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622 removals_.insert(DicomTag(0x0008, 0x0050)); // Accession Number |
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623 removals_.insert(DicomTag(0x0008, 0x0080)); // Institution Name |
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624 removals_.insert(DicomTag(0x0008, 0x0081)); // Institution Address |
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625 removals_.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name |
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626 removals_.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address |
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627 removals_.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers |
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628 removals_.insert(DicomTag(0x0008, 0x1010)); // Station Name |
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629 removals_.insert(DicomTag(0x0008, 0x1030)); // Study Description |
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630 removals_.insert(DicomTag(0x0008, 0x103e)); // Series Description |
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631 removals_.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name |
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632 removals_.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record |
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633 removals_.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name |
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634 removals_.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study |
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635 removals_.insert(DicomTag(0x0008, 0x1070)); // Operators' Name |
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636 removals_.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description |
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637 //uids_.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID => set in SetupUidsFromOrthanc_1_9_3() |
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638 removals_.insert(DicomTag(0x0008, 0x2111)); // Derivation Description |
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639 //removals_.insert(DicomTag(0x0010, 0x0010)); // Patient's Name => cf. below (*) |
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640 //removals_.insert(DicomTag(0x0010, 0x0020)); // Patient ID => cf. below (*) |
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641 removals_.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date |
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642 removals_.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time |
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643 removals_.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex |
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644 removals_.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids |
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645 removals_.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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646 removals_.insert(DicomTag(0x0010, 0x1010)); // Patient's Age |
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647 removals_.insert(DicomTag(0x0010, 0x1020)); // Patient's Size |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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648 removals_.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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649 removals_.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator |
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650 removals_.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group |
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651 removals_.insert(DicomTag(0x0010, 0x2180)); // Occupation |
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652 removals_.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History |
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653 removals_.insert(DicomTag(0x0010, 0x4000)); // Patient Comments |
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654 removals_.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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655 removals_.insert(DicomTag(0x0018, 0x1030)); // Protocol Name |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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656 //removals_.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => set in Apply() |
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657 //removals_.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => set in Apply() |
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658 removals_.insert(DicomTag(0x0020, 0x0010)); // Study ID |
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659 //uids_.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3() |
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660 //uids_.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3() |
2309
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661 removals_.insert(DicomTag(0x0020, 0x4000)); // Image Comments |
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662 removals_.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence |
4678
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663 //uids_.insert(DicomTag(0x0040, 0xa124)); // UID => set in SetupUidsFromOrthanc_1_9_3() |
2309
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664 removals_.insert(DicomTag(0x0040, 0xa730)); // Content Sequence |
4678
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665 //uids_.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID => set in SetupUidsFromOrthanc_1_9_3() |
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666 //uids_.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3() |
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667 //uids_.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3() |
786 | 668 |
2309
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669 // Some more removals (from the experience of DICOM files at the CHU of Liege) |
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670 removals_.insert(DicomTag(0x0010, 0x1040)); // Patient's Address |
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671 removals_.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician |
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672 removals_.insert(DicomTag(0x0010, 0x2154)); // PatientTelephoneNumbers |
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673 removals_.insert(DicomTag(0x0010, 0x2000)); // Medical Alerts |
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674 |
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675 // Set the DeidentificationMethod tag |
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676 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2008); |
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|
677 } |
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|
678 |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
679 |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
680 void DicomModification::SetupAnonymization2017c() |
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681 { |
2313
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682 /** |
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683 * This is Table E.1-1 from PS 3.15-2017c (DICOM Part 15: Security |
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684 * and System Management Profiles), "basic profile" column. It was |
4675
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GenerateAnonymizationProfile.py can read from URL
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|
685 * generated automatically by calling: |
7e4d1f2b3a8f
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686 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py |
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687 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2017c/part15.xml" |
2313
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688 **/ |
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|
689 |
4676
caf963ee3de9
DicomModification_Anonymization2017c.impl.h
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690 #include "DicomModification_Anonymization2017c.impl.h" |
2313
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691 |
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|
692 // Set the DeidentificationMethod tag |
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|
693 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2017c); |
2309
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|
694 } |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
695 |
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Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
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|
696 |
4677
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697 void DicomModification::SetupAnonymization2021b() |
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698 { |
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699 /** |
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700 * This is Table E.1-1 from PS 3.15-2021b (DICOM Part 15: Security |
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701 * and System Management Profiles), "basic profile" column. It was |
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|
702 * generated automatically by calling: |
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|
703 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py |
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|
704 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2021b/part15.xml" |
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705 * |
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706 * http://dicom.nema.org/medical/dicom/2021b/output/chtml/part15/chapter_E.html#table_E.1-1a |
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|
707 * http://dicom.nema.org/medical/dicom/2021b/output/chtml/part15/chapter_E.html#table_E.1-1 |
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|
708 **/ |
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|
709 |
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|
710 #include "DicomModification_Anonymization2021b.impl.h" |
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711 |
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712 // Set the DeidentificationMethod tag |
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713 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2021b); |
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714 } |
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|
715 |
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|
716 |
2309
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717 void DicomModification::SetupAnonymization(DicomVersion version) |
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718 { |
2721 | 719 isAnonymization_ = true; |
720 | |
2309
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|
721 removals_.clear(); |
2310
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722 clearings_.clear(); |
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723 removedRanges_.clear(); |
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724 uids_.clear(); |
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|
725 ClearReplacements(); |
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726 removePrivateTags_ = true; |
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727 level_ = ResourceType_Patient; |
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728 uidMap_.clear(); |
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729 privateTagsToKeep_.clear(); |
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|
730 |
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|
731 switch (version) |
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|
732 { |
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|
733 case DicomVersion_2008: |
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|
734 SetupAnonymization2008(); |
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|
735 break; |
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|
736 |
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|
737 case DicomVersion_2017c: |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2277
diff
changeset
|
738 SetupAnonymization2017c(); |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2277
diff
changeset
|
739 break; |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2277
diff
changeset
|
740 |
4677
521e39b3f2c0
Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4676
diff
changeset
|
741 case DicomVersion_2021b: |
521e39b3f2c0
Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4676
diff
changeset
|
742 SetupAnonymization2021b(); |
521e39b3f2c0
Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4676
diff
changeset
|
743 break; |
521e39b3f2c0
Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4676
diff
changeset
|
744 |
2309
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2277
diff
changeset
|
745 default: |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2277
diff
changeset
|
746 throw OrthancException(ErrorCode_ParameterOutOfRange); |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2277
diff
changeset
|
747 } |
786 | 748 |
749 // Set the PatientIdentityRemoved tag | |
1698
d78b87f93bcf
DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
750 ReplaceInternal(DicomTag(0x0012, 0x0062), "YES"); |
786 | 751 |
752 // (*) Choose a random patient name and ID | |
788 | 753 std::string patientId = FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient); |
1698
d78b87f93bcf
DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
754 ReplaceInternal(DICOM_TAG_PATIENT_ID, patientId); |
d78b87f93bcf
DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
755 ReplaceInternal(DICOM_TAG_PATIENT_NAME, patientId); |
4678
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
756 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
757 // Sanity check |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
758 for (SetOfTags::const_iterator it = uids_.begin(); it != uids_.end(); ++it) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
759 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
760 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(*it); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
761 if (vr != ValueRepresentation_UniqueIdentifier && |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
762 vr != ValueRepresentation_NotSupported /* for older versions of DCMTK */) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
763 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
764 throw OrthancException(ErrorCode_InternalError); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
765 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
766 } |
786 | 767 } |
768 | |
769 void DicomModification::Apply(ParsedDicomFile& toModify) | |
770 { | |
771 // Check the request | |
788 | 772 assert(ResourceType_Patient + 1 == ResourceType_Study && |
773 ResourceType_Study + 1 == ResourceType_Series && | |
774 ResourceType_Series + 1 == ResourceType_Instance); | |
786 | 775 |
776 if (IsRemoved(DICOM_TAG_PATIENT_ID) || | |
777 IsRemoved(DICOM_TAG_STUDY_INSTANCE_UID) || | |
778 IsRemoved(DICOM_TAG_SERIES_INSTANCE_UID) || | |
779 IsRemoved(DICOM_TAG_SOP_INSTANCE_UID)) | |
780 { | |
781 throw OrthancException(ErrorCode_BadRequest); | |
782 } | |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
783 |
786 | 784 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
785 // Sanity checks at the patient level |
788 | 786 if (level_ == ResourceType_Patient && !IsReplaced(DICOM_TAG_PATIENT_ID)) |
786 | 787 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
788 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
789 "When modifying a patient, her PatientID is required to be modified"); |
786 | 790 } |
791 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
792 if (!allowManualIdentifiers_) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
793 { |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
794 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
795 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
796 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
797 "When modifying a patient, the StudyInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
798 } |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
799 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
800 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
801 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
802 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
803 "When modifying a patient, the SeriesInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
804 } |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
805 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
806 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
807 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
808 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
809 "When modifying a patient, the SopInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
810 } |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
811 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
812 |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
813 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
814 // Sanity checks at the study level |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
815 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_PATIENT_ID)) |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
816 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
817 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
818 "When modifying a study, the parent PatientID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
819 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
820 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
821 if (!allowManualIdentifiers_) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
822 { |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
823 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
824 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
825 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
826 "When modifying a study, the SeriesInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
827 } |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
828 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
829 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
830 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
831 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
832 "When modifying a study, the SopInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
833 } |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
834 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
835 |
786 | 836 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
837 // Sanity checks at the series level |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
838 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_PATIENT_ID)) |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
839 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
840 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
841 "When modifying a series, the parent PatientID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
842 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
843 |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
844 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
786 | 845 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
846 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
847 "When modifying a series, the parent StudyInstanceUID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
848 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
849 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
850 if (!allowManualIdentifiers_) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
851 { |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
852 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
853 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
854 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
855 "When modifying a series, the SopInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
856 } |
786 | 857 } |
858 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
859 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
860 // Sanity checks at the instance level |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
861 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_PATIENT_ID)) |
786 | 862 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
863 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
864 "When modifying an instance, the parent PatientID cannot be manually modified"); |
786 | 865 } |
866 | |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
867 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
868 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
869 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
870 "When modifying an instance, the parent StudyInstanceUID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
871 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
872 |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
873 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
874 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
875 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
876 "When modifying an instance, the parent SeriesInstanceUID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
877 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
878 |
2535
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
879 // (0) Create a summary of the source file, if a custom generator |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
880 // is provided |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
881 if (identifierGenerator_ != NULL) |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
882 { |
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4119
diff
changeset
|
883 toModify.ExtractDicomSummary(currentSource_, ORTHANC_MAXIMUM_TAG_LENGTH); |
2535
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
884 } |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
885 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
886 // (1) Make sure the relationships are updated with the ids that we force too |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
887 // i.e: an RT-STRUCT is referencing its own StudyInstanceUID |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
888 if (isAnonymization_ && updateReferencedRelationships_) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
889 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
890 if (IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
891 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
892 std::string original; |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
893 std::string replacement = GetReplacementAsString(DICOM_TAG_STUDY_INSTANCE_UID); |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
894 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_STUDY_INSTANCE_UID); |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
895 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Study); |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
896 } |
2535
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
897 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
898 if (IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
899 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
900 std::string original; |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
901 std::string replacement = GetReplacementAsString(DICOM_TAG_SERIES_INSTANCE_UID); |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
902 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SERIES_INSTANCE_UID); |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
903 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Series); |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
904 } |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
905 |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
906 if (IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
907 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
908 std::string original; |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
909 std::string replacement = GetReplacementAsString(DICOM_TAG_SOP_INSTANCE_UID); |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
910 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SOP_INSTANCE_UID); |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
911 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Instance); |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
912 } |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
913 } |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
914 |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
915 |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
916 // (2) Remove the private tags, if need be |
786 | 917 if (removePrivateTags_) |
918 { | |
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
916
diff
changeset
|
919 toModify.RemovePrivateTags(privateTagsToKeep_); |
786 | 920 } |
921 | |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
922 // (3) Clear the tags specified by the user |
2310
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
923 for (SetOfTags::const_iterator it = clearings_.begin(); |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
924 it != clearings_.end(); ++it) |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
925 { |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
926 toModify.Clear(*it, true /* only clear if the tag exists in the original file */); |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
927 } |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
928 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
929 // (4) Remove the tags specified by the user |
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
916
diff
changeset
|
930 for (SetOfTags::const_iterator it = removals_.begin(); |
786 | 931 it != removals_.end(); ++it) |
932 { | |
933 toModify.Remove(*it); | |
934 } | |
935 | |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
936 // (5) Replace the tags |
786 | 937 for (Replacements::const_iterator it = replacements_.begin(); |
938 it != replacements_.end(); ++it) | |
939 { | |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
940 toModify.Replace(it->first, *it->second, true /* decode data URI scheme */, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
941 DicomReplaceMode_InsertIfAbsent, privateCreator_); |
786 | 942 } |
943 | |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
944 // (6) Update the DICOM identifiers |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
945 if (level_ <= ResourceType_Study && |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
946 !IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
786 | 947 { |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
948 if (keepStudyInstanceUid_) |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
949 { |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
950 LOG(WARNING) << "Modifying a study while keeping its original StudyInstanceUID: This should be avoided!"; |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
951 } |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
952 else |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
953 { |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
954 MapDicomTags(toModify, ResourceType_Study); |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
955 } |
786 | 956 } |
957 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
958 if (level_ <= ResourceType_Series && |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
959 !IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
786 | 960 { |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
961 if (keepSeriesInstanceUid_) |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
962 { |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
963 LOG(WARNING) << "Modifying a series while keeping its original SeriesInstanceUID: This should be avoided!"; |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
964 } |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
965 else |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
966 { |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
967 MapDicomTags(toModify, ResourceType_Series); |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
968 } |
786 | 969 } |
970 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
971 if (level_ <= ResourceType_Instance && // Always true |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
972 !IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
786 | 973 { |
3860
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
974 if (keepSopInstanceUid_) |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
975 { |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
976 LOG(WARNING) << "Modifying an instance while keeping its original SOPInstanceUID: This should be avoided!"; |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
977 } |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
978 else |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
979 { |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
980 MapDicomTags(toModify, ResourceType_Instance); |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
981 } |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
982 } |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
983 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
984 // (7) Update the "referenced" relationships in the case of an anonymization |
2721 | 985 if (isAnonymization_) |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
986 { |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
987 RelationshipsVisitor visitor(*this); |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
988 |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
989 if (updateReferencedRelationships_) |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
990 { |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
991 const_cast<const ParsedDicomFile&>(toModify).Apply(visitor); |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
992 } |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
993 else |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
994 { |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
995 visitor.RemoveRelationships(toModify); |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
996 } |
786 | 997 } |
998 } | |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
999 |
4297 | 1000 void DicomModification::SetAllowManualIdentifiers(bool check) |
1001 { | |
1002 allowManualIdentifiers_ = check; | |
1003 } | |
1004 | |
1005 bool DicomModification::AreAllowManualIdentifiers() const | |
1006 { | |
1007 return allowManualIdentifiers_; | |
1008 } | |
1009 | |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1010 |
2e6b7862ccf2
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1011 static bool IsDatabaseKey(const DicomTag& tag) |
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1012 { |
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1013 return (tag == DICOM_TAG_PATIENT_ID || |
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1014 tag == DICOM_TAG_STUDY_INSTANCE_UID || |
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1015 tag == DICOM_TAG_SERIES_INSTANCE_UID || |
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1016 tag == DICOM_TAG_SOP_INSTANCE_UID); |
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1017 } |
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1018 |
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1019 |
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1020 static void ParseListOfTags(DicomModification& target, |
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1021 const Json::Value& query, |
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1022 DicomModification::TagOperation operation, |
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1023 bool force) |
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1024 { |
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1025 if (!query.isArray()) |
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1026 { |
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1027 throw OrthancException(ErrorCode_BadRequest); |
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1028 } |
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1029 |
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1030 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++) |
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1031 { |
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1032 if (query[i].type() != Json::stringValue) |
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1033 { |
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1034 throw OrthancException(ErrorCode_BadRequest); |
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1035 } |
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1036 |
2519
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1037 std::string name = query[i].asString(); |
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1038 |
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1039 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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1040 |
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1041 if (!force && IsDatabaseKey(tag)) |
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1042 { |
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1043 throw OrthancException(ErrorCode_BadRequest, |
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1044 "Marking tag \"" + name + "\" as to be " + |
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1045 (operation == DicomModification::TagOperation_Keep ? "kept" : "removed") + |
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1046 " requires the \"Force\" option to be set to true"); |
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1047 } |
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1048 |
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1049 switch (operation) |
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1050 { |
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1051 case DicomModification::TagOperation_Keep: |
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1052 target.Keep(tag); |
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1053 LOG(TRACE) << "Keep: " << name << " (" << tag.Format() << ")"; |
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1054 break; |
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1055 |
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1056 case DicomModification::TagOperation_Remove: |
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1057 target.Remove(tag); |
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1058 LOG(TRACE) << "Remove: " << name << " (" << tag.Format() << ")"; |
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1059 break; |
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1060 |
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1061 default: |
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1062 throw OrthancException(ErrorCode_InternalError); |
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1063 } |
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1064 } |
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1065 } |
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1066 |
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1067 |
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1068 static void ParseReplacements(DicomModification& target, |
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1069 const Json::Value& replacements, |
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1070 bool force) |
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1071 { |
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1072 if (!replacements.isObject()) |
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1073 { |
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1074 throw OrthancException(ErrorCode_BadRequest); |
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1075 } |
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1076 |
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1077 Json::Value::Members members = replacements.getMemberNames(); |
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1078 for (size_t i = 0; i < members.size(); i++) |
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1079 { |
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1080 const std::string& name = members[i]; |
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1081 const Json::Value& value = replacements[name]; |
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1082 |
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1083 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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1084 |
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1085 if (!force && IsDatabaseKey(tag)) |
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1086 { |
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1087 throw OrthancException(ErrorCode_BadRequest, |
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1088 "Marking tag \"" + name + "\" as to be replaced " + |
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1089 "requires the \"Force\" option to be set to true"); |
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1090 } |
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1091 |
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1092 target.Replace(tag, value, false); |
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1093 |
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1094 LOG(TRACE) << "Replace: " << name << " (" << tag.Format() |
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1095 << ") == " << value.toStyledString(); |
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1096 } |
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1097 } |
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|
1098 |
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1099 |
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1100 static bool GetBooleanValue(const std::string& member, |
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1101 const Json::Value& json, |
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1102 bool defaultValue) |
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1103 { |
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1104 if (!json.isMember(member)) |
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1105 { |
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1106 return defaultValue; |
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1107 } |
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1108 else if (json[member].type() == Json::booleanValue) |
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1109 { |
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1110 return json[member].asBool(); |
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1111 } |
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1112 else |
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ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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1113 { |
2954
d924f9bb61cc
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Sebastien Jodogne <s.jodogne@gmail.com>
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1114 throw OrthancException(ErrorCode_BadFileFormat, |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1115 "Member \"" + member + "\" should be a Boolean value"); |
2519
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1116 } |
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1117 } |
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1118 |
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1119 |
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1120 void DicomModification::ParseModifyRequest(const Json::Value& request) |
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1121 { |
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1122 if (!request.isObject()) |
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1123 { |
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1124 throw OrthancException(ErrorCode_BadFileFormat); |
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1125 } |
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1126 |
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1127 bool force = GetBooleanValue("Force", request, false); |
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1128 |
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1129 if (GetBooleanValue("RemovePrivateTags", request, false)) |
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1130 { |
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1131 SetRemovePrivateTags(true); |
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1132 } |
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1133 |
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1134 if (request.isMember("Remove")) |
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1135 { |
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1136 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force); |
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1137 } |
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1138 |
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1139 if (request.isMember("Replace")) |
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1140 { |
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1141 ParseReplacements(*this, request["Replace"], force); |
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1142 } |
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1143 |
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1144 // The "Keep" operation only makes sense for the tags |
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1145 // StudyInstanceUID, SeriesInstanceUID and SOPInstanceUID. Avoid |
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1146 // this feature as much as possible, as this breaks the DICOM |
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1147 // model of the real world, except if you know exactly what |
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1148 // you're doing! |
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1149 if (request.isMember("Keep")) |
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1150 { |
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ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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1151 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force); |
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1152 } |
3691
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1153 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1154 // New in Orthanc 1.6.0 |
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1155 if (request.isMember("PrivateCreator")) |
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1156 { |
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1157 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator"); |
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|
1158 } |
2519
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|
1159 } |
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|
1160 |
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1161 |
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1162 void DicomModification::ParseAnonymizationRequest(bool& patientNameReplaced, |
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1163 const Json::Value& request) |
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1164 { |
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1165 if (!request.isObject()) |
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1166 { |
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1167 throw OrthancException(ErrorCode_BadFileFormat); |
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|
1168 } |
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|
1169 |
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|
1170 bool force = GetBooleanValue("Force", request, false); |
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1171 |
4677
521e39b3f2c0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4676
diff
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|
1172 // DicomVersion version = DicomVersion_2008; // For Orthanc <= 1.2.0 |
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Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1173 // DicomVersion version = DicomVersion_2017c; // For Orthanc between 1.3.0 and 1.9.3 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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4676
diff
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|
1174 DicomVersion version = DicomVersion_2021b; // For Orthanc >= 1.9.4 |
2519
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1175 if (request.isMember("DicomVersion")) |
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|
1176 { |
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1177 if (request["DicomVersion"].type() != Json::stringValue) |
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|
1178 { |
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|
1179 throw OrthancException(ErrorCode_BadFileFormat); |
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|
1180 } |
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|
1181 else |
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|
1182 { |
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1183 version = StringToDicomVersion(request["DicomVersion"].asString()); |
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|
1184 } |
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1185 } |
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1186 |
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|
1187 SetupAnonymization(version); |
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1188 |
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1189 std::string patientName = GetReplacementAsString(DICOM_TAG_PATIENT_NAME); |
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1190 |
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1191 if (GetBooleanValue("KeepPrivateTags", request, false)) |
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1192 { |
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1193 SetRemovePrivateTags(false); |
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1194 } |
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1195 |
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1196 if (request.isMember("Remove")) |
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1197 { |
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1198 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force); |
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1199 } |
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1200 |
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1201 if (request.isMember("Replace")) |
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1202 { |
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1203 ParseReplacements(*this, request["Replace"], force); |
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1204 } |
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1205 |
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1206 if (request.isMember("Keep")) |
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|
1207 { |
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|
1208 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force); |
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1209 } |
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|
1210 |
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|
1211 patientNameReplaced = (IsReplaced(DICOM_TAG_PATIENT_NAME) && |
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1212 GetReplacement(DICOM_TAG_PATIENT_NAME) == patientName); |
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1213 |
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1214 // New in Orthanc 1.6.0 |
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1215 if (request.isMember("PrivateCreator")) |
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1216 { |
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1217 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator"); |
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1218 } |
2519
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1219 } |
2616
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1220 |
4297 | 1221 void DicomModification::SetDicomIdentifierGenerator(DicomModification::IDicomIdentifierGenerator &generator) |
1222 { | |
1223 identifierGenerator_ = &generator; | |
1224 } | |
1225 | |
2662
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1226 |
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1227 |
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1228 |
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1229 static const char* REMOVE_PRIVATE_TAGS = "RemovePrivateTags"; |
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1230 static const char* LEVEL = "Level"; |
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1231 static const char* ALLOW_MANUAL_IDENTIFIERS = "AllowManualIdentifiers"; |
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1232 static const char* KEEP_STUDY_INSTANCE_UID = "KeepStudyInstanceUID"; |
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1233 static const char* KEEP_SERIES_INSTANCE_UID = "KeepSeriesInstanceUID"; |
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|
1234 static const char* KEEP_SOP_INSTANCE_UID = "KeepSOPInstanceUID"; |
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1235 static const char* UPDATE_REFERENCED_RELATIONSHIPS = "UpdateReferencedRelationships"; |
2721 | 1236 static const char* IS_ANONYMIZATION = "IsAnonymization"; |
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1237 static const char* REMOVALS = "Removals"; |
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1238 static const char* CLEARINGS = "Clearings"; |
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1239 static const char* PRIVATE_TAGS_TO_KEEP = "PrivateTagsToKeep"; |
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1240 static const char* REPLACEMENTS = "Replacements"; |
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1241 static const char* MAP_PATIENTS = "MapPatients"; |
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1242 static const char* MAP_STUDIES = "MapStudies"; |
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1243 static const char* MAP_SERIES = "MapSeries"; |
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1244 static const char* MAP_INSTANCES = "MapInstances"; |
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1245 static const char* PRIVATE_CREATOR = "PrivateCreator"; // New in Orthanc 1.6.0 |
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1246 static const char* UIDS = "Uids"; // New in Orthanc 1.9.4 |
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1247 static const char* REMOVED_RANGES = "RemovedRanges"; // New in Orthanc 1.9.4 |
2616
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1248 |
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1249 void DicomModification::Serialize(Json::Value& value) const |
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1250 { |
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1251 if (identifierGenerator_ != NULL) |
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1252 { |
2954
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1253 throw OrthancException(ErrorCode_InternalError, |
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1254 "Cannot serialize a DicomModification with a custom identifier generator"); |
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1255 } |
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1256 |
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1257 value = Json::objectValue; |
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1258 value[REMOVE_PRIVATE_TAGS] = removePrivateTags_; |
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1259 value[LEVEL] = EnumerationToString(level_); |
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1260 value[ALLOW_MANUAL_IDENTIFIERS] = allowManualIdentifiers_; |
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1261 value[KEEP_STUDY_INSTANCE_UID] = keepStudyInstanceUid_; |
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1262 value[KEEP_SERIES_INSTANCE_UID] = keepSeriesInstanceUid_; |
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1263 value[KEEP_SOP_INSTANCE_UID] = keepSopInstanceUid_; |
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1264 value[UPDATE_REFERENCED_RELATIONSHIPS] = updateReferencedRelationships_; |
2721 | 1265 value[IS_ANONYMIZATION] = isAnonymization_; |
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1266 value[PRIVATE_CREATOR] = privateCreator_; |
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1267 |
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1268 SerializationToolbox::WriteSetOfTags(value, removals_, REMOVALS); |
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1269 SerializationToolbox::WriteSetOfTags(value, clearings_, CLEARINGS); |
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1270 SerializationToolbox::WriteSetOfTags(value, privateTagsToKeep_, PRIVATE_TAGS_TO_KEEP); |
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1271 |
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1272 Json::Value& tmp = value[REPLACEMENTS]; |
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1273 |
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1274 tmp = Json::objectValue; |
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1275 |
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1276 for (Replacements::const_iterator it = replacements_.begin(); |
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1277 it != replacements_.end(); ++it) |
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1278 { |
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1279 assert(it->second != NULL); |
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1280 tmp[it->first.Format()] = *it->second; |
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1281 } |
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1282 |
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1283 Json::Value& mapPatients = value[MAP_PATIENTS]; |
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1284 Json::Value& mapStudies = value[MAP_STUDIES]; |
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1285 Json::Value& mapSeries = value[MAP_SERIES]; |
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1286 Json::Value& mapInstances = value[MAP_INSTANCES]; |
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1287 |
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1288 mapPatients = Json::objectValue; |
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1289 mapStudies = Json::objectValue; |
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1290 mapSeries = Json::objectValue; |
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1291 mapInstances = Json::objectValue; |
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1292 |
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1293 for (UidMap::const_iterator it = uidMap_.begin(); it != uidMap_.end(); ++it) |
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1294 { |
4200 | 1295 Json::Value* tmp2 = NULL; |
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1296 |
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1297 switch (it->first.first) |
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1298 { |
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1299 case ResourceType_Patient: |
4200 | 1300 tmp2 = &mapPatients; |
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1301 break; |
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1302 |
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1303 case ResourceType_Study: |
4200 | 1304 tmp2 = &mapStudies; |
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1305 break; |
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1306 |
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1307 case ResourceType_Series: |
4200 | 1308 tmp2 = &mapSeries; |
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1309 break; |
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1310 |
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1311 case ResourceType_Instance: |
4200 | 1312 tmp2 = &mapInstances; |
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1313 break; |
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1314 |
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1315 default: |
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1316 throw OrthancException(ErrorCode_InternalError); |
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1317 } |
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1318 |
4200 | 1319 assert(tmp2 != NULL); |
1320 (*tmp2) [it->first.second] = it->second; | |
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1321 } |
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1322 |
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1323 // New in Orthanc 1.9.4 |
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1324 SerializationToolbox::WriteSetOfTags(value, uids_, UIDS); |
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1325 |
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1326 // New in Orthanc 1.9.4 |
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1327 Json::Value ranges = Json::arrayValue; |
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1328 |
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1329 for (RemovedRanges::const_iterator it = removedRanges_.begin(); it != removedRanges_.end(); ++it) |
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1330 { |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
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1331 Json::Value item = Json::arrayValue; |
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diff
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|
1332 item.append(it->GetGroupFrom()); |
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diff
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|
1333 item.append(it->GetGroupTo()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1334 item.append(it->GetElementFrom()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1335 item.append(it->GetElementTo()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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1336 ranges.append(item); |
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1337 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1338 |
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diff
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1339 value[REMOVED_RANGES] = ranges; |
2662
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1340 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1341 |
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|
1342 void DicomModification::UnserializeUidMap(ResourceType level, |
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serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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1343 const Json::Value& serialized, |
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diff
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1344 const char* field) |
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1345 { |
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1346 if (!serialized.isMember(field) || |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1347 serialized[field].type() != Json::objectValue) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1348 { |
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1349 throw OrthancException(ErrorCode_BadFileFormat); |
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1350 } |
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|
1351 |
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1352 Json::Value::Members names = serialized[field].getMemberNames(); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1353 |
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1354 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it) |
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1355 { |
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1356 const Json::Value& value = serialized[field][*it]; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1357 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1358 if (value.type() != Json::stringValue) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1359 { |
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|
1360 throw OrthancException(ErrorCode_BadFileFormat); |
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|
1361 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1362 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1363 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1364 uidMap_[std::make_pair(level, *it)] = value.asString(); |
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|
1365 } |
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diff
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|
1366 } |
2655 | 1367 } |
1368 | |
1369 | |
2666
2540ac79ab6c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2662
diff
changeset
|
1370 DicomModification::DicomModification(const Json::Value& serialized) : |
2540ac79ab6c
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diff
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|
1371 identifierGenerator_(NULL) |
2655 | 1372 { |
2662
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|
1373 removePrivateTags_ = SerializationToolbox::ReadBoolean(serialized, REMOVE_PRIVATE_TAGS); |
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1374 level_ = StringToResourceType(SerializationToolbox::ReadString(serialized, LEVEL).c_str()); |
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1375 allowManualIdentifiers_ = SerializationToolbox::ReadBoolean(serialized, ALLOW_MANUAL_IDENTIFIERS); |
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diff
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|
1376 keepStudyInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_STUDY_INSTANCE_UID); |
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diff
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|
1377 keepSeriesInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SERIES_INSTANCE_UID); |
3860
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
1378 keepSopInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SOP_INSTANCE_UID); |
2662
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Sebastien Jodogne <s.jodogne@gmail.com>
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1379 updateReferencedRelationships_ = SerializationToolbox::ReadBoolean |
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diff
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|
1380 (serialized, UPDATE_REFERENCED_RELATIONSHIPS); |
2721 | 1381 isAnonymization_ = SerializationToolbox::ReadBoolean(serialized, IS_ANONYMIZATION); |
2662
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diff
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|
1382 |
3691
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1383 if (serialized.isMember(PRIVATE_CREATOR)) |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
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|
1384 { |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
1385 privateCreator_ = SerializationToolbox::ReadString(serialized, PRIVATE_CREATOR); |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1386 } |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1387 |
2662
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|
1388 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS); |
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diff
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|
1389 SerializationToolbox::ReadSetOfTags(clearings_, serialized, CLEARINGS); |
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|
1390 SerializationToolbox::ReadSetOfTags(privateTagsToKeep_, serialized, PRIVATE_TAGS_TO_KEEP); |
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|
1391 |
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|
1392 if (!serialized.isMember(REPLACEMENTS) || |
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diff
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|
1393 serialized[REPLACEMENTS].type() != Json::objectValue) |
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|
1394 { |
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|
1395 throw OrthancException(ErrorCode_BadFileFormat); |
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|
1396 } |
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|
1397 |
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|
1398 Json::Value::Members names = serialized[REPLACEMENTS].getMemberNames(); |
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diff
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|
1399 |
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|
1400 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it) |
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|
1401 { |
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|
1402 DicomTag tag(0, 0); |
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serialization of DicomModification
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parents:
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diff
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|
1403 if (!DicomTag::ParseHexadecimal(tag, it->c_str())) |
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|
1404 { |
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|
1405 throw OrthancException(ErrorCode_BadFileFormat); |
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|
1406 } |
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|
1407 else |
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|
1408 { |
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|
1409 const Json::Value& value = serialized[REPLACEMENTS][*it]; |
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1410 replacements_.insert(std::make_pair(tag, new Json::Value(value))); |
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|
1411 } |
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|
1412 } |
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|
1413 |
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|
1414 UnserializeUidMap(ResourceType_Patient, serialized, MAP_PATIENTS); |
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1415 UnserializeUidMap(ResourceType_Study, serialized, MAP_STUDIES); |
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|
1416 UnserializeUidMap(ResourceType_Series, serialized, MAP_SERIES); |
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|
1417 UnserializeUidMap(ResourceType_Instance, serialized, MAP_INSTANCES); |
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1418 |
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1419 // New in Orthanc 1.9.4 |
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1420 if (serialized.isMember(UIDS)) // Backward compatibility with Orthanc <= 1.9.3 |
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1421 { |
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diff
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1422 SerializationToolbox::ReadSetOfTags(uids_, serialized, UIDS); |
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1423 } |
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1424 else |
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1425 { |
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changeset
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1426 SetupUidsFromOrthanc_1_9_3(); |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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|
1427 } |
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1428 |
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1429 // New in Orthanc 1.9.4 |
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|
1430 removedRanges_.clear(); |
2e850edf03d6
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diff
changeset
|
1431 if (serialized.isMember(REMOVED_RANGES)) // Backward compatibility with Orthanc <= 1.9.3 |
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changeset
|
1432 { |
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diff
changeset
|
1433 const Json::Value& ranges = serialized[REMOVED_RANGES]; |
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1434 |
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diff
changeset
|
1435 if (ranges.type() != Json::arrayValue) |
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diff
changeset
|
1436 { |
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diff
changeset
|
1437 throw OrthancException(ErrorCode_BadFileFormat); |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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|
1438 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
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changeset
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1439 else |
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Full support for the anonymization of subsequences containing tags whose VR is UI
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diff
changeset
|
1440 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1441 for (Json::Value::ArrayIndex i = 0; i < ranges.size(); i++) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
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|
1442 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1443 if (ranges[i].type() != Json::arrayValue || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1444 ranges[i].size() != 4 || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1445 !ranges[i][0].isUInt() || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1446 !ranges[i][1].isUInt() || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1447 !ranges[i][2].isUInt() || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1448 !ranges[i][3].isUInt()) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1449 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1450 throw OrthancException(ErrorCode_BadFileFormat); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1451 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1452 else |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1453 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
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|
1454 Json::LargestUInt groupFrom = ranges[i][0].asUInt(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1455 Json::LargestUInt groupTo = ranges[i][1].asUInt(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1456 Json::LargestUInt elementFrom = ranges[i][2].asUInt(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1457 Json::LargestUInt elementTo = ranges[i][3].asUInt(); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1458 |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1459 if (groupFrom > groupTo || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1460 elementFrom > elementTo || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
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|
1461 groupTo > 0xffffu || |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1462 elementTo > 0xffffu) |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1463 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1464 throw OrthancException(ErrorCode_BadFileFormat); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1465 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1466 else |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1467 { |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
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|
1468 removedRanges_.push_back(DicomTagRange(groupFrom, groupTo, elementFrom, elementTo)); |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1469 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
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|
1470 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1471 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1472 } |
2e850edf03d6
Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1473 } |
2616
2f3007bf0708
event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2535
diff
changeset
|
1474 } |
4297 | 1475 |
1476 | |
1477 void DicomModification::SetPrivateCreator(const std::string &privateCreator) | |
1478 { | |
1479 privateCreator_ = privateCreator; | |
1480 } | |
1481 | |
1482 const std::string &DicomModification::GetPrivateCreator() const | |
1483 { | |
1484 return privateCreator_; | |
1485 } | |
786 | 1486 } |