Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 3087:df1b17be20f6 db-changes
cont
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 04 Jan 2019 17:22:47 +0100 |
parents | 74e3e48aa9bd |
children | 31244604f617 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
1198 | 41 #include "ServerIndexChange.h" |
8 | 42 #include "EmbeddedResources.h" |
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43 #include "OrthancConfiguration.h" |
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44 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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45 #include "ServerToolbox.h" |
0 | 46 #include "../Core/Toolbox.h" |
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47 #include "../Core/Logging.h" |
0 | 48 #include "../Core/DicomFormat/DicomArray.h" |
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49 |
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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51 #include "ServerContext.h" |
1822 | 52 #include "DicomInstanceToStore.h" |
0 | 53 |
54 #include <boost/lexical_cast.hpp> | |
55 #include <stdio.h> | |
56 | |
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57 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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58 |
62 | 59 namespace Orthanc |
0 | 60 { |
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61 static void CopyListToVector(std::vector<std::string>& target, |
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62 const std::list<std::string>& source) |
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63 { |
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64 target.resize(source.size()); |
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65 |
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66 size_t pos = 0; |
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67 |
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68 for (std::list<std::string>::const_iterator |
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69 it = source.begin(); it != source.end(); ++it) |
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70 { |
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71 target[pos] = *it; |
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72 pos ++; |
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73 } |
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74 } |
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75 |
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76 |
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77 class ServerIndex::Listener : public IDatabaseListener |
0 | 78 { |
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79 private: |
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80 struct FileToRemove |
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81 { |
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82 private: |
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83 std::string uuid_; |
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84 FileContentType type_; |
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85 |
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86 public: |
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87 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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88 type_(info.GetContentType()) |
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89 { |
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90 } |
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91 |
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92 const std::string& GetUuid() const |
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93 { |
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94 return uuid_; |
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95 } |
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96 |
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97 FileContentType GetContentType() const |
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98 { |
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99 return type_; |
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100 } |
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101 }; |
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102 |
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103 ServerContext& context_; |
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104 bool hasRemainingLevel_; |
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105 ResourceType remainingType_; |
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106 std::string remainingPublicId_; |
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107 std::list<FileToRemove> pendingFilesToRemove_; |
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108 std::list<ServerIndexChange> pendingChanges_; |
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109 uint64_t sizeOfFilesToRemove_; |
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110 bool insideTransaction_; |
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111 |
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112 void Reset() |
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113 { |
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114 sizeOfFilesToRemove_ = 0; |
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115 hasRemainingLevel_ = false; |
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116 pendingFilesToRemove_.clear(); |
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117 pendingChanges_.clear(); |
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118 } |
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119 |
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120 public: |
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121 Listener(ServerContext& context) : context_(context), |
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122 insideTransaction_(false) |
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123 { |
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124 Reset(); |
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125 assert(ResourceType_Patient < ResourceType_Study && |
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126 ResourceType_Study < ResourceType_Series && |
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127 ResourceType_Series < ResourceType_Instance); |
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128 } |
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129 |
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130 void StartTransaction() |
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131 { |
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132 Reset(); |
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133 insideTransaction_ = true; |
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134 } |
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135 |
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136 void EndTransaction() |
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137 { |
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138 insideTransaction_ = false; |
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139 } |
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140 |
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141 uint64_t GetSizeOfFilesToRemove() |
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142 { |
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143 return sizeOfFilesToRemove_; |
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144 } |
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145 |
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146 void CommitFilesToRemove() |
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147 { |
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148 for (std::list<FileToRemove>::const_iterator |
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149 it = pendingFilesToRemove_.begin(); |
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150 it != pendingFilesToRemove_.end(); ++it) |
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151 { |
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152 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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153 } |
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154 } |
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155 |
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156 void CommitChanges() |
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157 { |
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158 for (std::list<ServerIndexChange>::const_iterator |
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159 it = pendingChanges_.begin(); |
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160 it != pendingChanges_.end(); ++it) |
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161 { |
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162 context_.SignalChange(*it); |
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163 } |
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164 } |
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165 |
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166 virtual void SignalRemainingAncestor(ResourceType parentType, |
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167 const std::string& publicId) |
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168 { |
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169 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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170 |
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171 if (hasRemainingLevel_) |
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172 { |
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173 if (parentType < remainingType_) |
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174 { |
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175 remainingType_ = parentType; |
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176 remainingPublicId_ = publicId; |
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177 } |
1158 | 178 } |
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179 else |
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180 { |
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181 hasRemainingLevel_ = true; |
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182 remainingType_ = parentType; |
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183 remainingPublicId_ = publicId; |
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184 } |
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185 } |
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186 |
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187 virtual void SignalFileDeleted(const FileInfo& info) |
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188 { |
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189 assert(Toolbox::IsUuid(info.GetUuid())); |
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190 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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191 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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192 } |
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193 |
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194 virtual void SignalChange(const ServerIndexChange& change) |
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195 { |
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196 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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197 << EnumerationToString(change.GetResourceType()) << ": " |
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198 << EnumerationToString(change.GetChangeType()); |
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199 |
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200 if (insideTransaction_) |
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201 { |
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202 pendingChanges_.push_back(change); |
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203 } |
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204 else |
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205 { |
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206 context_.SignalChange(change); |
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207 } |
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208 } |
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209 |
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210 bool HasRemainingLevel() const |
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211 { |
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212 return hasRemainingLevel_; |
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213 } |
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214 |
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215 ResourceType GetRemainingType() const |
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216 { |
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217 assert(HasRemainingLevel()); |
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218 return remainingType_; |
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219 } |
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220 |
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221 const std::string& GetRemainingPublicId() const |
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222 { |
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223 assert(HasRemainingLevel()); |
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224 return remainingPublicId_; |
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225 } |
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226 }; |
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228 | |
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229 class ServerIndex::Transaction |
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230 { |
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231 private: |
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232 ServerIndex& index_; |
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233 std::auto_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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234 bool isCommitted_; |
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235 |
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236 public: |
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237 Transaction(ServerIndex& index) : |
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238 index_(index), |
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239 isCommitted_(false) |
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240 { |
1247 | 241 transaction_.reset(index_.db_.StartTransaction()); |
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242 transaction_->Begin(); |
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243 |
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244 index_.listener_->StartTransaction(); |
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245 } |
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246 |
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247 ~Transaction() |
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248 { |
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249 index_.listener_->EndTransaction(); |
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250 |
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251 if (!isCommitted_) |
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252 { |
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253 transaction_->Rollback(); |
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254 } |
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255 } |
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256 |
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257 void Commit(uint64_t sizeOfAddedFiles) |
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258 { |
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259 if (!isCommitted_) |
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260 { |
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261 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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262 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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263 |
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264 transaction_->Commit(delta); |
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265 |
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266 // We can remove the files once the SQLite transaction has |
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267 // been successfully committed. Some files might have to be |
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268 // deleted because of recycling. |
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269 index_.listener_->CommitFilesToRemove(); |
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270 |
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271 // Send all the pending changes to the Orthanc plugins |
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272 index_.listener_->CommitChanges(); |
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273 |
278
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274 isCommitted_ = true; |
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275 } |
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276 } |
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277 }; |
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278 |
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279 |
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280 class ServerIndex::UnstableResourcePayload |
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281 { |
1177
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282 private: |
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283 ResourceType type_; |
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284 std::string publicId_; |
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285 boost::posix_time::ptime time_; |
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286 |
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287 public: |
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288 UnstableResourcePayload() : type_(ResourceType_Instance) |
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289 { |
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290 } |
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291 |
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292 UnstableResourcePayload(Orthanc::ResourceType type, |
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293 const std::string& publicId) : |
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294 type_(type), |
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295 publicId_(publicId) |
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296 { |
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297 time_ = boost::posix_time::second_clock::local_time(); |
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298 } |
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299 |
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300 unsigned int GetAge() const |
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301 { |
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302 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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303 } |
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304 |
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305 ResourceType GetResourceType() const |
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306 { |
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307 return type_; |
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308 } |
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309 |
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310 const std::string& GetPublicId() const |
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311 { |
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312 return publicId_; |
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313 } |
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314 }; |
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315 |
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316 |
3027 | 317 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable |
318 { | |
319 private: | |
320 class TagInfo | |
321 { | |
322 private: | |
323 ResourceType level_; | |
324 DicomTagType type_; | |
325 | |
326 public: | |
327 TagInfo() | |
328 { | |
329 } | |
330 | |
331 TagInfo(ResourceType level, | |
332 DicomTagType type) : | |
333 level_(level), | |
334 type_(type) | |
335 { | |
336 } | |
337 | |
338 ResourceType GetLevel() const | |
339 { | |
340 return level_; | |
341 } | |
342 | |
343 DicomTagType GetType() const | |
344 { | |
345 return type_; | |
346 } | |
347 }; | |
348 | |
349 typedef std::map<DicomTag, TagInfo> Registry; | |
350 | |
351 | |
352 Registry registry_; | |
353 | |
354 void LoadTags(ResourceType level) | |
355 { | |
356 const DicomTag* tags = NULL; | |
357 size_t size; | |
358 | |
359 ServerToolbox::LoadIdentifiers(tags, size, level); | |
360 | |
361 for (size_t i = 0; i < size; i++) | |
362 { | |
363 if (registry_.find(tags[i]) == registry_.end()) | |
364 { | |
365 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier); | |
366 } | |
367 else | |
368 { | |
369 // These patient-level tags are copied in the study level | |
370 assert(level == ResourceType_Study && | |
371 (tags[i] == DICOM_TAG_PATIENT_ID || | |
372 tags[i] == DICOM_TAG_PATIENT_NAME || | |
373 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE)); | |
374 } | |
375 } | |
376 | |
377 DicomMap::LoadMainDicomTags(tags, size, level); | |
378 | |
379 for (size_t i = 0; i < size; i++) | |
380 { | |
381 if (registry_.find(tags[i]) == registry_.end()) | |
382 { | |
383 registry_[tags[i]] = TagInfo(level, DicomTagType_Main); | |
384 } | |
385 } | |
386 } | |
387 | |
388 public: | |
389 MainDicomTagsRegistry() | |
390 { | |
391 LoadTags(ResourceType_Patient); | |
392 LoadTags(ResourceType_Study); | |
393 LoadTags(ResourceType_Series); | |
394 LoadTags(ResourceType_Instance); | |
395 } | |
396 | |
397 void LookupTag(ResourceType& level, | |
398 DicomTagType& type, | |
399 const DicomTag& tag) const | |
400 { | |
401 Registry::const_iterator it = registry_.find(tag); | |
402 | |
403 if (it == registry_.end()) | |
404 { | |
405 // Default values | |
406 level = ResourceType_Instance; | |
407 type = DicomTagType_Generic; | |
408 } | |
409 else | |
410 { | |
411 level = it->second.GetLevel(); | |
412 type = it->second.GetType(); | |
413 } | |
414 } | |
415 }; | |
416 | |
417 | |
212 | 418 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 419 const std::string& uuid, |
202 | 420 ResourceType expectedType) |
0 | 421 { |
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422 boost::mutex::scoped_lock lock(mutex_); |
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423 |
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424 Transaction t(*this); |
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425 |
202 | 426 int64_t id; |
427 ResourceType type; | |
1294 | 428 if (!db_.LookupResource(id, type, uuid) || |
202 | 429 expectedType != type) |
0 | 430 { |
431 return false; | |
432 } | |
202 | 433 |
1247 | 434 db_.DeleteResource(id); |
0 | 435 |
202 | 436 if (listener_->HasRemainingLevel()) |
0 | 437 { |
202 | 438 ResourceType type = listener_->GetRemainingType(); |
439 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 440 |
441 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 442 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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443 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 444 target["RemainingAncestor"]["ID"] = uuid; |
445 } | |
446 else | |
447 { | |
448 target["RemainingAncestor"] = Json::nullValue; | |
449 } | |
450 | |
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451 t.Commit(0); |
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452 |
0 | 453 return true; |
454 } | |
455 | |
456 | |
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457 void ServerIndex::FlushThread(ServerIndex* that, |
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458 unsigned int threadSleep) |
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459 { |
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460 // By default, wait for 10 seconds before flushing |
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461 unsigned int sleep = 10; |
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462 |
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463 try |
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464 { |
744 | 465 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 466 std::string sleepString; |
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467 |
1247 | 468 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 469 Toolbox::IsInteger(sleepString)) |
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470 { |
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471 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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472 } |
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473 } |
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474 catch (boost::bad_lexical_cast&) |
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475 { |
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476 } |
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477 |
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478 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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479 |
511
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480 unsigned int count = 0; |
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481 |
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482 while (!that->done_) |
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483 { |
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484 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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485 count++; |
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486 if (count < sleep) |
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487 { |
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488 continue; |
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489 } |
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490 |
2217 | 491 Logging::Flush(); |
492 | |
511
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493 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 494 that->db_.FlushToDisk(); |
511
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495 count = 0; |
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496 } |
511
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497 |
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498 LOG(INFO) << "Stopping the database flushing thread"; |
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499 } |
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500 |
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501 |
3087 | 502 static void ComputeExpectedNumberOfInstances(ResourcesContent& target, |
433 | 503 int64_t series, |
504 const DicomMap& dicomSummary) | |
505 { | |
506 try | |
507 { | |
656 | 508 const DicomValue* value; |
509 const DicomValue* value2; | |
510 | |
433 | 511 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
512 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
513 { | |
514 // Patch for series with temporal positions thanks to Will Ryder | |
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515 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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516 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 517 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
3087 | 518 target.AddMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); |
433 | 519 } |
520 | |
521 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
522 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
523 { | |
524 // Support of Cardio-PET images | |
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525 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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526 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 527 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
3087 | 528 target.AddMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); |
433 | 529 } |
530 | |
531 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
532 { | |
3087 | 533 target.AddMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 534 } |
535 } | |
1737
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536 catch (OrthancException&) |
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537 { |
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538 } |
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539 catch (boost::bad_lexical_cast&) |
433 | 540 { |
541 } | |
542 } | |
543 | |
544 | |
1237 | 545 |
546 | |
1238 | 547 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 548 int64_t id, |
549 MetadataType type) | |
550 { | |
1238 | 551 std::string s; |
1247 | 552 if (!db_.LookupMetadata(s, id, type)) |
1237 | 553 { |
554 return false; | |
555 } | |
556 | |
557 try | |
558 { | |
1238 | 559 result = boost::lexical_cast<int64_t>(s); |
1237 | 560 return true; |
561 } | |
562 catch (boost::bad_lexical_cast&) | |
563 { | |
564 return false; | |
565 } | |
566 } | |
567 | |
568 | |
1297 | 569 void ServerIndex::LogChange(int64_t internalId, |
570 ChangeType changeType, | |
571 ResourceType resourceType, | |
572 const std::string& publicId) | |
573 { | |
574 ServerIndexChange change(changeType, resourceType, publicId); | |
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575 |
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576 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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577 { |
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578 db_.LogChange(internalId, change); |
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579 } |
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580 |
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581 assert(listener_.get() != NULL); |
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582 listener_->SignalChange(change); |
1297 | 583 } |
584 | |
1237 | 585 |
586 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
587 { | |
588 std::string oldValue; | |
589 | |
1247 | 590 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 591 { |
592 uint64_t oldNumber; | |
593 | |
594 try | |
595 { | |
596 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 597 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 598 return oldNumber + 1; |
599 } | |
600 catch (boost::bad_lexical_cast&) | |
601 { | |
602 throw OrthancException(ErrorCode_InternalError); | |
603 } | |
604 } | |
605 else | |
606 { | |
607 // Initialize the sequence at "1" | |
1247 | 608 db_.SetGlobalProperty(property, "1"); |
1237 | 609 return 1; |
610 } | |
611 } | |
612 | |
613 | |
614 | |
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615 ServerIndex::ServerIndex(ServerContext& context, |
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616 IDatabaseWrapper& db, |
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617 unsigned int threadSleep) : |
511
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618 done_(false), |
1247 | 619 db_(db), |
269
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620 maximumStorageSize_(0), |
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621 maximumPatients_(0), |
3027 | 622 overwrite_(false), |
623 mainDicomTagsRegistry_(new MainDicomTagsRegistry) | |
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624 { |
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625 listener_.reset(new Listener(context)); |
1247 | 626 db_.SetListener(*listener_); |
180
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627 |
269
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628 // Initial recycling if the parameters have changed since the last |
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629 // execution of Orthanc |
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630 StandaloneRecycling(); |
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631 |
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632 if (db.HasFlushToDisk()) |
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633 { |
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634 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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635 } |
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636 |
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637 unstableResourcesMonitorThread_ = boost::thread |
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638 (UnstableResourcesMonitorThread, this, threadSleep); |
206
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639 } |
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640 |
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641 |
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642 |
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643 ServerIndex::~ServerIndex() |
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644 { |
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645 if (!done_) |
511
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646 { |
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647 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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648 Stop(); |
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649 } |
0 | 650 } |
651 | |
652 | |
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653 |
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654 void ServerIndex::Stop() |
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655 { |
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656 if (!done_) |
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657 { |
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658 done_ = true; |
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659 |
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660 if (db_.HasFlushToDisk() && |
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661 flushThread_.joinable()) |
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662 { |
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663 flushThread_.join(); |
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664 } |
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665 |
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666 if (unstableResourcesMonitorThread_.joinable()) |
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667 { |
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668 unstableResourcesMonitorThread_.join(); |
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669 } |
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670 } |
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671 } |
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672 |
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673 |
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674 static void SetInstanceMetadata(ResourcesContent& content, |
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675 std::map<MetadataType, std::string>& instanceMetadata, |
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676 int64_t instance, |
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677 MetadataType metadata, |
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678 const std::string& value) |
2188 | 679 { |
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680 content.AddMetadata(instance, metadata, value); |
2188 | 681 instanceMetadata[metadata] = value; |
682 } | |
683 | |
684 | |
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685 void ServerIndex::SignalNewResource(ChangeType changeType, |
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686 ResourceType level, |
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687 const std::string& publicId, |
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688 int64_t internalId) |
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689 { |
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690 ServerIndexChange change(changeType, level, publicId); |
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691 db_.LogChange(internalId, change); |
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692 |
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693 assert(listener_.get() != NULL); |
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694 listener_->SignalChange(change); |
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695 } |
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696 |
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697 |
1006
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698 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 699 DicomInstanceToStore& instanceToStore, |
700 const Attachments& attachments) | |
0 | 701 { |
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702 boost::mutex::scoped_lock lock(mutex_); |
0 | 703 |
1822 | 704 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
705 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
706 | |
1006
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707 instanceMetadata.clear(); |
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708 |
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709 const std::string hashPatient = instanceToStore.GetHasher().HashPatient(); |
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710 const std::string hashStudy = instanceToStore.GetHasher().HashStudy(); |
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711 const std::string hashSeries = instanceToStore.GetHasher().HashSeries(); |
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712 const std::string hashInstance = instanceToStore.GetHasher().HashInstance(); |
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713 |
0 | 714 try |
715 { | |
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716 Transaction t(*this); |
0 | 717 |
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718 IDatabaseWrapper::CreateInstanceResult status; |
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719 int64_t instanceId; |
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720 |
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721 // Check whether this instance is already stored |
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722 if (!db_.CreateInstance(status, instanceId, hashPatient, |
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|
723 hashStudy, hashSeries, hashInstance)) |
0 | 724 { |
3082
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new extension for database plugin SDK: createInstance
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|
725 // The instance already exists |
847a0ed92654
new extension for database plugin SDK: createInstance
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diff
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|
726 |
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new extension for database plugin SDK: createInstance
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parents:
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|
727 if (overwrite_) |
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new extension for database plugin SDK: createInstance
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parents:
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diff
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|
728 { |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
729 // Overwrite the old instance |
847a0ed92654
new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
730 LOG(INFO) << "Overwriting instance: " << hashInstance; |
847a0ed92654
new extension for database plugin SDK: createInstance
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parents:
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|
731 db_.DeleteResource(instanceId); |
847a0ed92654
new extension for database plugin SDK: createInstance
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parents:
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diff
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|
732 |
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new extension for database plugin SDK: createInstance
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parents:
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diff
changeset
|
733 // Re-create the instance, now that the old one is removed |
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new extension for database plugin SDK: createInstance
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parents:
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diff
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|
734 if (!db_.CreateInstance(status, instanceId, hashPatient, |
847a0ed92654
new extension for database plugin SDK: createInstance
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parents:
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diff
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|
735 hashStudy, hashSeries, hashInstance)) |
847a0ed92654
new extension for database plugin SDK: createInstance
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parents:
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diff
changeset
|
736 { |
847a0ed92654
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diff
changeset
|
737 throw OrthancException(ErrorCode_InternalError); |
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new extension for database plugin SDK: createInstance
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diff
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|
738 } |
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new extension for database plugin SDK: createInstance
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parents:
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|
739 } |
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new extension for database plugin SDK: createInstance
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parents:
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diff
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|
740 else |
847a0ed92654
new extension for database plugin SDK: createInstance
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parents:
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diff
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|
741 { |
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new extension for database plugin SDK: createInstance
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diff
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|
742 // Do nothing if the instance already exists and overwriting is disabled |
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diff
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|
743 db_.GetAllMetadata(instanceMetadata, instanceId); |
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new extension for database plugin SDK: createInstance
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744 return StoreStatus_AlreadyStored; |
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diff
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|
745 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
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|
746 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
747 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
748 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
749 // Warn about the creation of new resources. The order must be from instance to patient. |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
750 SignalNewResource(ChangeType_NewInstance, ResourceType_Instance, hashInstance, instanceId); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
751 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
752 if (status.isNewSeries_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
753 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
754 SignalNewResource(ChangeType_NewSeries, ResourceType_Series, hashSeries, status.seriesId_); |
0 | 755 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
756 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
3075
diff
changeset
|
757 if (status.isNewStudy_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
758 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
759 SignalNewResource(ChangeType_NewStudy, ResourceType_Study, hashStudy, status.studyId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
760 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
761 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
762 if (status.isNewPatient_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
763 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
764 SignalNewResource(ChangeType_NewPatient, ResourceType_Patient, hashPatient, status.patientId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
765 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
766 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
767 |
268
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264
diff
changeset
|
768 // Ensure there is enough room in the storage for the new instance |
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264
diff
changeset
|
769 uint64_t instanceSize = 0; |
4bc02e2254ec
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diff
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|
770 for (Attachments::const_iterator it = attachments.begin(); |
656 | 771 it != attachments.end(); ++it) |
268
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264
diff
changeset
|
772 { |
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diff
changeset
|
773 instanceSize += it->GetCompressedSize(); |
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diff
changeset
|
774 } |
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diff
changeset
|
775 |
3080
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started refactoring of ServerIndex::Store()
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changeset
|
776 Recycle(instanceSize, hashPatient /* don't consider the current patient for recycling */); |
3086
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diff
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|
777 |
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|
778 |
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|
779 // Attach the files to the newly created instance |
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changeset
|
780 for (Attachments::const_iterator it = attachments.begin(); |
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diff
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|
781 it != attachments.end(); ++it) |
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|
782 { |
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changeset
|
783 db_.AddAttachment(instanceId, *it); |
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diff
changeset
|
784 } |
3080
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started refactoring of ServerIndex::Store()
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diff
changeset
|
785 |
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started refactoring of ServerIndex::Store()
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diff
changeset
|
786 |
0 | 787 { |
3083
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
788 ResourcesContent content; |
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changeset
|
789 |
3086
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|
790 // Populate the tags of the newly-created resources |
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diff
changeset
|
791 |
3083
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changeset
|
792 content.AddResource(instanceId, ResourceType_Instance, dicomSummary); |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
793 |
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diff
changeset
|
794 if (status.isNewSeries_) |
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diff
changeset
|
795 { |
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changeset
|
796 content.AddResource(status.seriesId_, ResourceType_Series, dicomSummary); |
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diff
changeset
|
797 } |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
798 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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changeset
|
799 if (status.isNewStudy_) |
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diff
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|
800 { |
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changeset
|
801 content.AddResource(status.studyId_, ResourceType_Study, dicomSummary); |
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changeset
|
802 } |
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IDatabaseWrapper::SetResourcesContent
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parents:
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diff
changeset
|
803 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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changeset
|
804 if (status.isNewPatient_) |
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diff
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|
805 { |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
806 content.AddResource(status.patientId_, ResourceType_Patient, dicomSummary); |
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IDatabaseWrapper::SetResourcesContent
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diff
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|
807 } |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
808 |
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|
809 |
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|
810 // Attach the user-specified metadata |
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|
811 |
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|
812 for (MetadataMap::const_iterator |
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|
813 it = metadata.begin(); it != metadata.end(); ++it) |
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|
814 { |
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|
815 switch (it->first.first) |
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|
816 { |
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|
817 case ResourceType_Patient: |
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|
818 content.AddMetadata(status.patientId_, it->first.second, it->second); |
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|
819 break; |
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|
820 |
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changeset
|
821 case ResourceType_Study: |
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|
822 content.AddMetadata(status.studyId_, it->first.second, it->second); |
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|
823 break; |
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|
824 |
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|
825 case ResourceType_Series: |
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|
826 content.AddMetadata(status.seriesId_, it->first.second, it->second); |
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|
827 break; |
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|
828 |
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changeset
|
829 case ResourceType_Instance: |
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|
830 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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changeset
|
831 it->first.second, it->second); |
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|
832 break; |
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diff
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|
833 |
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|
834 default: |
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changeset
|
835 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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|
836 } |
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|
837 } |
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|
838 |
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diff
changeset
|
839 |
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changeset
|
840 // Attach the auto-computed metadata for the patient/study/series levels |
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diff
changeset
|
841 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
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changeset
|
842 content.AddMetadata(status.seriesId_, MetadataType_LastUpdate, now); |
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843 content.AddMetadata(status.studyId_, MetadataType_LastUpdate, now); |
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844 content.AddMetadata(status.patientId_, MetadataType_LastUpdate, now); |
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845 |
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846 |
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847 // Attach the auto-computed metadata for the instance level, |
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848 // reflecting these additions into the input metadata map |
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849 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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850 MetadataType_Instance_ReceptionDate, now); |
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851 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_RemoteAet, |
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852 instanceToStore.GetOrigin().GetRemoteAetC()); |
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853 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_Origin, |
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854 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
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855 |
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856 |
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857 { |
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858 std::string s; |
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859 |
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860 if (instanceToStore.LookupTransferSyntax(s)) |
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861 { |
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862 // New in Orthanc 1.2.0 |
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863 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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864 MetadataType_Instance_TransferSyntax, s); |
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865 } |
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866 |
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867 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
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868 { |
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869 // New in Orthanc 1.4.0 |
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870 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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871 MetadataType_Instance_RemoteIp, s); |
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872 } |
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873 |
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874 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
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875 { |
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876 // New in Orthanc 1.4.0 |
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877 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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878 MetadataType_Instance_CalledAet, s); |
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879 } |
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880 |
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881 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
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882 { |
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883 // New in Orthanc 1.4.0 |
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884 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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885 MetadataType_Instance_HttpUsername, s); |
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886 } |
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887 } |
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888 |
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889 |
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890 const DicomValue* value; |
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891 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
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892 !value->IsNull() && |
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893 !value->IsBinary()) |
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894 { |
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895 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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896 MetadataType_Instance_SopClassUid, value->GetContent()); |
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897 } |
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898 |
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899 |
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900 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
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901 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) |
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902 { |
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903 if (!value->IsNull() && |
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904 !value->IsBinary()) |
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905 { |
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906 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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907 MetadataType_Instance_IndexInSeries, value->GetContent()); |
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908 } |
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909 } |
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910 |
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911 |
3087 | 912 // Check whether the series of this new instance is now completed |
913 if (status.isNewSeries_) | |
914 { | |
915 ComputeExpectedNumberOfInstances(content, status.seriesId_, dicomSummary); | |
916 } | |
917 | |
918 | |
3083
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919 db_.SetResourcesContent(content); |
3080
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920 } |
3086
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921 |
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922 |
3087 | 923 // TODO - SPEED THIS UP |
3080
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924 SeriesStatus seriesStatus = GetSeriesStatus(status.seriesId_); |
205
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925 if (seriesStatus == SeriesStatus_Complete) |
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926 { |
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927 LogChange(status.seriesId_, ChangeType_CompletedSeries, ResourceType_Series, hashSeries); |
205
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928 } |
3087 | 929 |
205
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930 |
511
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931 // Mark the parent resources of this instance as unstable |
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932 MarkAsUnstable(status.seriesId_, ResourceType_Series, hashSeries); |
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933 MarkAsUnstable(status.studyId_, ResourceType_Study, hashStudy); |
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934 MarkAsUnstable(status.patientId_, ResourceType_Patient, hashPatient); |
511
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935 |
278
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936 t.Commit(instanceSize); |
268
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937 |
0 | 938 return StoreStatus_Success; |
939 } | |
62 | 940 catch (OrthancException& e) |
0 | 941 { |
1247 | 942 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 943 } |
944 | |
945 return StoreStatus_Failure; | |
946 } | |
947 | |
948 | |
238 | 949 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 950 { |
206
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951 boost::mutex::scoped_lock lock(mutex_); |
238 | 952 target = Json::objectValue; |
0 | 953 |
3020
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954 uint64_t cs = db_.GetTotalCompressedSize(); |
1247 | 955 uint64_t us = db_.GetTotalUncompressedSize(); |
440
23e5b35e3c5c
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956 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 957 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
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958 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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959 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 960 |
1247 | 961 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
962 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
963 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
964 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 965 } |
966 | |
187
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967 |
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968 |
585 | 969 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 970 { |
971 // Get the expected number of instances in this series (from the metadata) | |
1238 | 972 int64_t expected; |
973 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 974 { |
975 return SeriesStatus_Unknown; | |
976 } | |
977 | |
978 // Loop over the instances of this series | |
979 std::list<int64_t> children; | |
1247 | 980 db_.GetChildrenInternalId(children, id); |
199 | 981 |
1238 | 982 std::set<int64_t> instances; |
199 | 983 for (std::list<int64_t>::const_iterator |
656 | 984 it = children.begin(); it != children.end(); ++it) |
199 | 985 { |
986 // Get the index of this instance in the series | |
1238 | 987 int64_t index; |
988 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 989 { |
990 return SeriesStatus_Unknown; | |
991 } | |
992 | |
656 | 993 if (!(index > 0 && index <= expected)) |
199 | 994 { |
995 // Out-of-range instance index | |
996 return SeriesStatus_Inconsistent; | |
997 } | |
998 | |
999 if (instances.find(index) != instances.end()) | |
1000 { | |
1001 // Twice the same instance index | |
1002 return SeriesStatus_Inconsistent; | |
1003 } | |
1004 | |
1005 instances.insert(index); | |
1006 } | |
1007 | |
1238 | 1008 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 1009 { |
1010 return SeriesStatus_Complete; | |
1011 } | |
1012 else | |
1013 { | |
1014 return SeriesStatus_Missing; | |
1015 } | |
1016 } | |
1017 | |
1018 | |
202 | 1019 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
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1020 int64_t resourceId, |
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1021 ResourceType resourceType) |
198
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1022 { |
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1023 DicomMap tags; |
1247 | 1024 db_.GetMainDicomTags(tags, resourceId); |
1676
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1025 |
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1026 if (resourceType == ResourceType_Study) |
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diff
changeset
|
1027 { |
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diff
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|
1028 DicomMap t1, t2; |
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diff
changeset
|
1029 tags.ExtractStudyInformation(t1); |
f079f3efe33b
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diff
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|
1030 tags.ExtractPatientInformation(t2); |
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diff
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|
1031 |
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diff
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|
1032 target["MainDicomTags"] = Json::objectValue; |
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diff
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|
1033 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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diff
changeset
|
1034 |
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diff
changeset
|
1035 target["PatientMainDicomTags"] = Json::objectValue; |
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diff
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|
1036 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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diff
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|
1037 } |
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diff
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|
1038 else |
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1668
diff
changeset
|
1039 { |
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1668
diff
changeset
|
1040 target["MainDicomTags"] = Json::objectValue; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1668
diff
changeset
|
1041 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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|
1042 } |
198
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1043 } |
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1044 |
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1045 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 1046 const std::string& publicId, |
1047 ResourceType expectedType) | |
198
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1048 { |
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1049 result = Json::objectValue; |
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1050 |
206
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flush to disk thread
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1051 boost::mutex::scoped_lock lock(mutex_); |
199 | 1052 |
198
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1053 // Lookup for the requested resource |
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1054 int64_t id; |
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1055 ResourceType type; |
1294 | 1056 if (!db_.LookupResource(id, type, publicId) || |
199 | 1057 type != expectedType) |
198
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1058 { |
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1059 return false; |
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1060 } |
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1061 |
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1062 // Find the parent resource (if it exists) |
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1063 if (type != ResourceType_Patient) |
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1064 { |
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1065 int64_t parentId; |
1247 | 1066 if (!db_.LookupParent(parentId, id)) |
198
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1067 { |
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1068 throw OrthancException(ErrorCode_InternalError); |
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1069 } |
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1070 |
1247 | 1071 std::string parent = db_.GetPublicId(parentId); |
198
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1072 |
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1073 switch (type) |
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1074 { |
269
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|
1075 case ResourceType_Study: |
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1076 result["ParentPatient"] = parent; |
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1077 break; |
198
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1078 |
269
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1079 case ResourceType_Series: |
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1080 result["ParentStudy"] = parent; |
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|
1081 break; |
198
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|
1082 |
269
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|
1083 case ResourceType_Instance: |
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1084 result["ParentSeries"] = parent; |
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|
1085 break; |
198
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1086 |
269
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|
1087 default: |
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|
1088 throw OrthancException(ErrorCode_InternalError); |
198
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|
1089 } |
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|
1090 } |
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|
1091 |
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1092 // List the children resources |
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|
1093 std::list<std::string> children; |
1247 | 1094 db_.GetChildrenPublicId(children, id); |
198
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|
1095 |
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|
1096 if (type != ResourceType_Instance) |
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|
1097 { |
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|
1098 Json::Value c = Json::arrayValue; |
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|
1099 |
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|
1100 for (std::list<std::string>::const_iterator |
656 | 1101 it = children.begin(); it != children.end(); ++it) |
198
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1102 { |
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|
1103 c.append(*it); |
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1104 } |
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|
1105 |
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|
1106 switch (type) |
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|
1107 { |
269
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|
1108 case ResourceType_Patient: |
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|
1109 result["Studies"] = c; |
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|
1110 break; |
198
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|
1111 |
269
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|
1112 case ResourceType_Study: |
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|
1113 result["Series"] = c; |
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diff
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|
1114 break; |
198
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|
1115 |
269
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|
1116 case ResourceType_Series: |
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|
1117 result["Instances"] = c; |
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|
1118 break; |
198
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|
1119 |
269
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1120 default: |
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1121 throw OrthancException(ErrorCode_InternalError); |
198
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1122 } |
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1123 } |
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1124 |
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1125 // Set the resource type |
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1126 switch (type) |
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|
1127 { |
269
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1128 case ResourceType_Patient: |
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1129 result["Type"] = "Patient"; |
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|
1130 break; |
198
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|
1131 |
269
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|
1132 case ResourceType_Study: |
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1133 result["Type"] = "Study"; |
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1134 break; |
199 | 1135 |
269
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1136 case ResourceType_Series: |
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1137 { |
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1138 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
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diff
changeset
|
1139 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
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1140 |
1238 | 1141 int64_t i; |
1237 | 1142 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1143 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
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1144 else |
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|
1145 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
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changeset
|
1146 |
269
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|
1147 break; |
200
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changeset
|
1148 } |
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changeset
|
1149 |
269
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1150 case ResourceType_Instance: |
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|
1151 { |
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|
1152 result["Type"] = "Instance"; |
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1153 |
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1154 FileInfo attachment; |
1247 | 1155 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
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1156 { |
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1157 throw OrthancException(ErrorCode_InternalError); |
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1158 } |
200
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1159 |
269
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1160 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
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1161 result["FileUuid"] = attachment.GetUuid(); |
200
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|
1162 |
1238 | 1163 int64_t i; |
1237 | 1164 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1165 result["IndexInSeries"] = static_cast<int>(i); |
269
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1166 else |
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1167 result["IndexInSeries"] = Json::nullValue; |
198
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1168 |
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1169 break; |
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1170 } |
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1171 |
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1172 default: |
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1173 throw OrthancException(ErrorCode_InternalError); |
198
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1174 } |
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1175 |
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1176 // Record the remaining information |
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1177 result["ID"] = publicId; |
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1178 MainDicomTagsToJson(result, id, type); |
198
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1179 |
315 | 1180 std::string tmp; |
1181 | |
1247 | 1182 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1183 { |
315 | 1184 result["AnonymizedFrom"] = tmp; |
1236 | 1185 } |
315 | 1186 |
1247 | 1187 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1188 { |
315 | 1189 result["ModifiedFrom"] = tmp; |
1236 | 1190 } |
315 | 1191 |
511
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1192 if (type == ResourceType_Patient || |
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1193 type == ResourceType_Study || |
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|
1194 type == ResourceType_Series) |
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1195 { |
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1196 result["IsStable"] = !unstableResources_.Contains(id); |
1148
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Sebastien Jodogne <s.jodogne@gmail.com>
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1197 |
1247 | 1198 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1199 { |
1148
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1200 result["LastUpdate"] = tmp; |
1236 | 1201 } |
511
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1202 } |
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1203 |
198
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1204 return true; |
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1205 } |
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1206 |
0 | 1207 |
232
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1208 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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1209 const std::string& instanceUuid, |
233 | 1210 FileContentType contentType) |
0 | 1211 { |
206
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1212 boost::mutex::scoped_lock lock(mutex_); |
0 | 1213 |
193
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1214 int64_t id; |
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1215 ResourceType type; |
1294 | 1216 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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1217 { |
1113
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1218 throw OrthancException(ErrorCode_UnknownResource); |
192
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1219 } |
193
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1220 |
1247 | 1221 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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1222 { |
233 | 1223 assert(attachment.GetContentType() == contentType); |
232
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1224 return true; |
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1225 } |
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1226 else |
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1227 { |
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1228 return false; |
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|
1229 } |
192
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|
1230 } |
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1231 |
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1232 |
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|
1233 |
1354 | 1234 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1235 ResourceType resourceType) |
0 | 1236 { |
1357 | 1237 boost::mutex::scoped_lock lock(mutex_); |
1238 db_.GetAllPublicIds(target, resourceType); | |
0 | 1239 } |
1240 | |
1241 | |
1509
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1242 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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1243 ResourceType resourceType, |
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1244 size_t since, |
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1245 size_t limit) |
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1246 { |
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1247 if (limit == 0) |
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|
1248 { |
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|
1249 target.clear(); |
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1250 return; |
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1251 } |
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|
1252 |
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|
1253 boost::mutex::scoped_lock lock(mutex_); |
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|
1254 db_.GetAllPublicIds(target, resourceType, since, limit); |
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1255 } |
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1256 |
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1257 |
1244 | 1258 template <typename T> |
1259 static void FormatLog(Json::Value& target, | |
1260 const std::list<T>& log, | |
1261 const std::string& name, | |
1262 bool done, | |
1263 int64_t since) | |
1240 | 1264 { |
1265 Json::Value items = Json::arrayValue; | |
1244 | 1266 for (typename std::list<T>::const_iterator |
1304 | 1267 it = log.begin(); it != log.end(); ++it) |
1240 | 1268 { |
1269 Json::Value item; | |
1270 it->Format(item); | |
1271 items.append(item); | |
1272 } | |
1273 | |
1274 target = Json::objectValue; | |
1244 | 1275 target[name] = items; |
1240 | 1276 target["Done"] = done; |
1277 | |
1305 | 1278 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1279 target["Last"] = static_cast<int>(last); |
1280 } | |
1281 | |
1282 | |
1247 | 1283 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1284 int64_t since, |
0 | 1285 unsigned int maxResults) |
1286 { | |
1240 | 1287 std::list<ServerIndexChange> changes; |
1288 bool done; | |
1289 | |
1290 { | |
1291 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1292 |
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1293 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1294 // "GetLastChange()" involves calls to "GetPublicId()" |
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1295 Transaction transaction(*this); |
1247 | 1296 db_.GetChanges(changes, done, since, maxResults); |
2717
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1297 transaction.Commit(0); |
1240 | 1298 } |
1299 | |
1244 | 1300 FormatLog(target, changes, "Changes", done, since); |
237
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1301 } |
0 | 1302 |
1240 | 1303 |
1247 | 1304 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1305 { |
1240 | 1306 std::list<ServerIndexChange> changes; |
1307 | |
1308 { | |
1309 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1310 |
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1311 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1312 // "GetLastChange()" involves calls to "GetPublicId()" |
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1313 Transaction transaction(*this); |
1247 | 1314 db_.GetLastChange(changes); |
2717
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1315 transaction.Commit(0); |
1240 | 1316 } |
1317 | |
1244 | 1318 FormatLog(target, changes, "Changes", true, 0); |
0 | 1319 } |
231 | 1320 |
1240 | 1321 |
231 | 1322 void ServerIndex::LogExportedResource(const std::string& publicId, |
1323 const std::string& remoteModality) | |
1324 { | |
1325 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1326 Transaction transaction(*this); |
231 | 1327 |
1328 int64_t id; | |
1329 ResourceType type; | |
1294 | 1330 if (!db_.LookupResource(id, type, publicId)) |
231 | 1331 { |
2573
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1332 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1333 } |
1334 | |
1335 std::string patientId; | |
1336 std::string studyInstanceUid; | |
1337 std::string seriesInstanceUid; | |
1338 std::string sopInstanceUid; | |
1339 | |
1340 int64_t currentId = id; | |
1341 ResourceType currentType = type; | |
1342 | |
1343 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1344 bool done = false; | |
1345 while (!done) | |
1346 { | |
1347 DicomMap map; | |
1247 | 1348 db_.GetMainDicomTags(map, currentId); |
231 | 1349 |
1350 switch (currentType) | |
1351 { | |
269
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1352 case ResourceType_Patient: |
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|
1353 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1354 { |
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1355 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1356 } |
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1357 done = true; |
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1358 break; |
231 | 1359 |
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1360 case ResourceType_Study: |
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1361 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1362 { |
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1363 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1364 } |
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1365 currentType = ResourceType_Patient; |
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1366 break; |
231 | 1367 |
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1368 case ResourceType_Series: |
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1369 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1370 { |
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1371 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1372 } |
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1373 currentType = ResourceType_Study; |
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1374 break; |
231 | 1375 |
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1376 case ResourceType_Instance: |
2090
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1377 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1378 { |
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1379 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1380 } |
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1381 currentType = ResourceType_Series; |
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1382 break; |
231 | 1383 |
269
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1384 default: |
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1385 throw OrthancException(ErrorCode_InternalError); |
231 | 1386 } |
1387 | |
1388 // If we have not reached the Patient level, find the parent of | |
1389 // the current resource | |
1390 if (!done) | |
1391 { | |
1247 | 1392 bool ok = db_.LookupParent(currentId, currentId); |
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1393 assert(ok); |
231 | 1394 } |
1395 } | |
1396 | |
1246 | 1397 ExportedResource resource(-1, |
1398 type, | |
1399 publicId, | |
1400 remoteModality, | |
2475
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1401 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1402 patientId, |
1403 studyInstanceUid, | |
1404 seriesInstanceUid, | |
1405 sopInstanceUid); | |
1310
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1406 |
1247 | 1407 db_.LogExportedResource(resource); |
1310
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1408 transaction.Commit(0); |
231 | 1409 } |
1410 | |
1411 | |
1247 | 1412 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1413 int64_t since, |
1414 unsigned int maxResults) | |
1415 { | |
1244 | 1416 std::list<ExportedResource> exported; |
1417 bool done; | |
1418 | |
1419 { | |
1420 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1421 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1422 } |
1423 | |
1424 FormatLog(target, exported, "Exports", done, since); | |
231 | 1425 } |
237
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1426 |
1244 | 1427 |
1247 | 1428 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1429 { |
1244 | 1430 std::list<ExportedResource> exported; |
1431 | |
1432 { | |
1433 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1434 db_.GetLastExportedResource(exported); |
1244 | 1435 } |
1436 | |
1437 FormatLog(target, exported, "Exports", true, 0); | |
237
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1438 } |
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1439 |
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1440 |
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1441 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1442 { |
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1443 if (maximumStorageSize_ != 0) |
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1444 { |
3020
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1445 assert(maximumStorageSize_ >= instanceSize); |
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1446 |
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1447 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
269
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1448 { |
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1449 return true; |
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1450 } |
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1451 } |
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1452 |
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1453 if (maximumPatients_ != 0) |
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1454 { |
1247 | 1455 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1456 if (patientCount > maximumPatients_) |
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1457 { |
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1458 return true; |
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1459 } |
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1460 } |
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1461 |
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1462 return false; |
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1463 } |
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1464 |
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1465 |
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1466 void ServerIndex::Recycle(uint64_t instanceSize, |
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1467 const std::string& newPatientId) |
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1468 { |
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1469 if (!IsRecyclingNeeded(instanceSize)) |
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1470 { |
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1471 return; |
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1472 } |
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1473 |
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1474 // Check whether other DICOM instances from this patient are |
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1475 // already stored |
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1476 int64_t patientToAvoid; |
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|
1477 ResourceType type; |
1294 | 1478 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1479 |
269
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1480 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1481 { |
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1482 throw OrthancException(ErrorCode_InternalError); |
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1483 } |
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1484 |
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1485 // Iteratively select patient to remove until there is enough |
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1486 // space in the DICOM store |
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1487 int64_t patientToRecycle; |
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1488 while (true) |
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1489 { |
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1490 // If other instances of this patient are already in the store, |
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1491 // we must avoid to recycle them |
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|
1492 bool ok = hasPatientToAvoid ? |
1247 | 1493 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1494 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1495 |
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1496 if (!ok) |
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1497 { |
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1498 throw OrthancException(ErrorCode_FullStorage); |
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1499 } |
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1500 |
1331
77e129ba64e4
Prevent freeze on C-FIND if no DICOM tag is to be returned
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|
1501 VLOG(1) << "Recycling one patient"; |
1247 | 1502 db_.DeleteResource(patientToRecycle); |
269
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1503 |
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1504 if (!IsRecyclingNeeded(instanceSize)) |
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1505 { |
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1506 // OK, we're done |
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1507 break; |
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1508 } |
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1509 } |
268
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1510 } |
269
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1511 |
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1512 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1513 { |
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1514 boost::mutex::scoped_lock lock(mutex_); |
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1515 maximumPatients_ = count; |
270
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1516 |
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1517 if (count == 0) |
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1518 { |
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1519 LOG(WARNING) << "No limit on the number of stored patients"; |
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1520 } |
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1521 else |
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1522 { |
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1523 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1524 } |
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1525 |
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1526 StandaloneRecycling(); |
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1527 } |
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1528 |
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1529 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1530 { |
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1531 boost::mutex::scoped_lock lock(mutex_); |
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1532 maximumStorageSize_ = size; |
270
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1533 |
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1534 if (size == 0) |
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1535 { |
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1536 LOG(WARNING) << "No limit on the size of the storage area"; |
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1537 } |
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1538 else |
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1539 { |
440
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1540 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1541 } |
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1542 |
269
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1543 StandaloneRecycling(); |
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1544 } |
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1545 |
2825
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|
1546 void ServerIndex::SetOverwriteInstances(bool overwrite) |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
1547 { |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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2726
diff
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|
1548 boost::mutex::scoped_lock lock(mutex_); |
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|
1549 overwrite_ = overwrite; |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
1550 } |
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|
1551 |
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1552 |
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1553 void ServerIndex::StandaloneRecycling() |
269
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1554 { |
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1555 // WARNING: No mutex here, do not include this as a public method |
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1556 Transaction t(*this); |
269
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1557 Recycle(0, ""); |
278
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1558 t.Commit(0); |
269
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1559 } |
272
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|
1560 |
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1561 |
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1562 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1563 { |
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1564 boost::mutex::scoped_lock lock(mutex_); |
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1565 |
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1566 // Lookup for the requested resource |
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1567 int64_t id; |
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1568 ResourceType type; |
1294 | 1569 if (!db_.LookupResource(id, type, publicId) || |
272
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1570 type != ResourceType_Patient) |
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|
1571 { |
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1572 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1573 } |
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1574 |
1247 | 1575 return db_.IsProtectedPatient(id); |
272
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1576 } |
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|
1577 |
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|
1578 |
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1579 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1580 bool isProtected) |
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|
1581 { |
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1582 boost::mutex::scoped_lock lock(mutex_); |
1310
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|
1583 Transaction transaction(*this); |
272
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1584 |
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1585 // Lookup for the requested resource |
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1586 int64_t id; |
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|
1587 ResourceType type; |
1294 | 1588 if (!db_.LookupResource(id, type, publicId) || |
272
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1589 type != ResourceType_Patient) |
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|
1590 { |
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|
1591 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1592 } |
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1593 |
1247 | 1594 db_.SetProtectedPatient(id, isProtected); |
1310
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1595 transaction.Commit(0); |
272
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|
1596 |
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1597 if (isProtected) |
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1598 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1599 else |
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1600 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1601 } |
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1602 |
304 | 1603 |
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|
1604 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1605 const std::string& publicId) |
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1606 { |
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1607 result.clear(); |
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1608 |
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1609 boost::mutex::scoped_lock lock(mutex_); |
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1610 |
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1611 ResourceType type; |
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|
1612 int64_t resource; |
1294 | 1613 if (!db_.LookupResource(resource, type, publicId)) |
714
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|
1614 { |
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1615 throw OrthancException(ErrorCode_UnknownResource); |
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1616 } |
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1617 |
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1618 if (type == ResourceType_Instance) |
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|
1619 { |
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1620 // An instance cannot have a child |
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1621 throw OrthancException(ErrorCode_BadParameterType); |
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1622 } |
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1623 |
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1624 std::list<int64_t> tmp; |
1247 | 1625 db_.GetChildrenInternalId(tmp, resource); |
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1626 |
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1627 for (std::list<int64_t>::const_iterator |
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1628 it = tmp.begin(); it != tmp.end(); ++it) |
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1629 { |
1247 | 1630 result.push_back(db_.GetPublicId(*it)); |
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1631 } |
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1632 } |
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1633 |
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1634 |
304 | 1635 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1636 const std::string& publicId) | |
1637 { | |
1638 result.clear(); | |
1639 | |
1640 boost::mutex::scoped_lock lock(mutex_); | |
1641 | |
1642 ResourceType type; | |
1643 int64_t top; | |
1294 | 1644 if (!db_.LookupResource(top, type, publicId)) |
304 | 1645 { |
1646 throw OrthancException(ErrorCode_UnknownResource); | |
1647 } | |
1648 | |
1649 if (type == ResourceType_Instance) | |
1650 { | |
1651 // The resource is already an instance: Do not go down the hierarchy | |
1652 result.push_back(publicId); | |
1653 return; | |
1654 } | |
1655 | |
1656 std::stack<int64_t> toExplore; | |
1657 toExplore.push(top); | |
1658 | |
1659 std::list<int64_t> tmp; | |
1660 | |
1661 while (!toExplore.empty()) | |
1662 { | |
1663 // Get the internal ID of the current resource | |
1664 int64_t resource = toExplore.top(); | |
1665 toExplore.pop(); | |
1666 | |
1247 | 1667 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1668 { |
1247 | 1669 result.push_back(db_.GetPublicId(resource)); |
304 | 1670 } |
1671 else | |
1672 { | |
1673 // Tag all the children of this resource as to be explored | |
1247 | 1674 db_.GetChildrenInternalId(tmp, resource); |
304 | 1675 for (std::list<int64_t>::const_iterator |
656 | 1676 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1677 { |
1678 toExplore.push(*it); | |
1679 } | |
1680 } | |
1681 } | |
1682 } | |
1683 | |
306
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1684 |
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1685 void ServerIndex::SetMetadata(const std::string& publicId, |
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1686 MetadataType type, |
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1687 const std::string& value) |
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1688 { |
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1689 boost::mutex::scoped_lock lock(mutex_); |
1773
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|
1690 Transaction t(*this); |
306
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1691 |
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1692 ResourceType rtype; |
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|
1693 int64_t id; |
1294 | 1694 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1695 { |
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1696 throw OrthancException(ErrorCode_UnknownResource); |
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1697 } |
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1698 |
1247 | 1699 db_.SetMetadata(id, type, value); |
1773
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1700 |
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1701 if (IsUserMetadata(type)) |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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1702 { |
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1703 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1704 } |
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1705 |
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1706 t.Commit(0); |
306
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1707 } |
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1708 |
438 | 1709 |
1710 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1711 MetadataType type) | |
1712 { | |
1713 boost::mutex::scoped_lock lock(mutex_); | |
1773
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|
1714 Transaction t(*this); |
438 | 1715 |
1716 ResourceType rtype; | |
1717 int64_t id; | |
1294 | 1718 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1719 { |
1720 throw OrthancException(ErrorCode_UnknownResource); | |
1721 } | |
1722 | |
1247 | 1723 db_.DeleteMetadata(id, type); |
1773
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1724 |
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1725 if (IsUserMetadata(type)) |
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|
1726 { |
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1727 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1728 } |
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|
1729 |
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1730 t.Commit(0); |
438 | 1731 } |
1732 | |
1733 | |
306
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1734 bool ServerIndex::LookupMetadata(std::string& target, |
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1735 const std::string& publicId, |
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1736 MetadataType type) |
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1737 { |
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1738 boost::mutex::scoped_lock lock(mutex_); |
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1739 |
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1740 ResourceType rtype; |
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1741 int64_t id; |
1294 | 1742 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1743 { |
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1744 throw OrthancException(ErrorCode_UnknownResource); |
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1745 } |
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1746 |
1247 | 1747 return db_.LookupMetadata(target, id, type); |
306
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1748 } |
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1749 |
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1750 |
739 | 1751 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1752 const std::string& publicId) |
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1753 { |
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1754 boost::mutex::scoped_lock lock(mutex_); |
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1755 |
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1756 ResourceType rtype; |
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1757 int64_t id; |
1294 | 1758 if (!db_.LookupResource(id, rtype, publicId)) |
436
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1759 { |
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1760 throw OrthancException(ErrorCode_UnknownResource); |
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1761 } |
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|
1762 |
1247 | 1763 db_.ListAvailableMetadata(target, id); |
436
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1764 } |
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|
1765 |
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|
1766 |
697
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1767 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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|
1768 const std::string& publicId, |
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1769 ResourceType expectedType) |
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|
1770 { |
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|
1771 boost::mutex::scoped_lock lock(mutex_); |
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|
1772 |
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|
1773 ResourceType type; |
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1774 int64_t id; |
1294 | 1775 if (!db_.LookupResource(id, type, publicId) || |
697
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|
1776 expectedType != type) |
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|
1777 { |
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|
1778 throw OrthancException(ErrorCode_UnknownResource); |
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|
1779 } |
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1780 |
1247 | 1781 db_.ListAvailableAttachments(target, id); |
697
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|
1782 } |
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1783 |
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1784 |
306
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1785 bool ServerIndex::LookupParent(std::string& target, |
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1786 const std::string& publicId) |
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1787 { |
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1788 boost::mutex::scoped_lock lock(mutex_); |
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1789 |
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1790 ResourceType type; |
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1791 int64_t id; |
1294 | 1792 if (!db_.LookupResource(id, type, publicId)) |
306
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1793 { |
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1794 throw OrthancException(ErrorCode_UnknownResource); |
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1795 } |
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1796 |
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1797 int64_t parentId; |
1247 | 1798 if (db_.LookupParent(parentId, id)) |
306
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1799 { |
1247 | 1800 target = db_.GetPublicId(parentId); |
306
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1801 return true; |
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1802 } |
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1803 else |
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1804 { |
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1805 return false; |
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1806 } |
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1807 } |
310 | 1808 |
1809 | |
1810 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1811 { | |
1812 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1813 Transaction transaction(*this); |
311 | 1814 |
1237 | 1815 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
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1816 transaction.Commit(0); |
311 | 1817 |
1818 return seq; | |
310 | 1819 } |
315 | 1820 |
1821 | |
1822 | |
1823 void ServerIndex::LogChange(ChangeType changeType, | |
1824 const std::string& publicId) | |
1825 { | |
1826 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1827 Transaction transaction(*this); |
315 | 1828 |
1829 int64_t id; | |
1830 ResourceType type; | |
1294 | 1831 if (!db_.LookupResource(id, type, publicId)) |
315 | 1832 { |
1833 throw OrthancException(ErrorCode_UnknownResource); | |
1834 } | |
1835 | |
1237 | 1836 LogChange(id, changeType, type, publicId); |
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1837 transaction.Commit(0); |
315 | 1838 } |
413
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1839 |
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1840 |
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1841 void ServerIndex::DeleteChanges() |
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1842 { |
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1843 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1844 db_.ClearChanges(); |
413
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1845 } |
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1846 |
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1847 void ServerIndex::DeleteExportedResources() |
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1848 { |
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|
1849 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1850 db_.ClearExportedResources(); |
413
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1851 } |
440
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1852 |
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1853 |
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|
1854 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& diskSize, |
646 | 1855 /* out */ uint64_t& uncompressedSize, |
1856 /* out */ unsigned int& countStudies, | |
1857 /* out */ unsigned int& countSeries, | |
1858 /* out */ unsigned int& countInstances, | |
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1859 /* out */ uint64_t& dicomDiskSize, |
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1860 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1861 /* in */ int64_t id, |
1862 /* in */ ResourceType type) | |
440
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1863 { |
646 | 1864 std::stack<int64_t> toExplore; |
1865 toExplore.push(id); | |
440
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1866 |
646 | 1867 countInstances = 0; |
1868 countSeries = 0; | |
1869 countStudies = 0; | |
2987
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1870 diskSize = 0; |
646 | 1871 uncompressedSize = 0; |
2987
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1872 dicomDiskSize = 0; |
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1873 dicomUncompressedSize = 0; |
440
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1874 |
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1875 while (!toExplore.empty()) |
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1876 { |
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1877 // Get the internal ID of the current resource |
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1878 int64_t resource = toExplore.top(); |
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1879 toExplore.pop(); |
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1880 |
1247 | 1881 ResourceType thisType = db_.GetResourceType(resource); |
440
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1882 |
702
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1883 std::list<FileContentType> f; |
1247 | 1884 db_.ListAvailableAttachments(f, resource); |
702
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1885 |
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1886 for (std::list<FileContentType>::const_iterator |
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1887 it = f.begin(); it != f.end(); ++it) |
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1888 { |
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1889 FileInfo attachment; |
1247 | 1890 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1891 { |
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1892 if (attachment.GetContentType() == FileContentType_Dicom) |
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1893 { |
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1894 dicomDiskSize += attachment.GetCompressedSize(); |
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1895 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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1896 } |
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1897 |
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1898 diskSize += attachment.GetCompressedSize(); |
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1899 uncompressedSize += attachment.GetUncompressedSize(); |
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1900 } |
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1901 } |
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1902 |
440
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1903 if (thisType == ResourceType_Instance) |
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1904 { |
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1905 countInstances++; |
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1906 } |
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1907 else |
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1908 { |
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1909 switch (thisType) |
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1910 { |
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1911 case ResourceType_Study: |
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1912 countStudies++; |
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1913 break; |
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1914 |
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1915 case ResourceType_Series: |
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1916 countSeries++; |
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1917 break; |
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1918 |
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1919 default: |
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1920 break; |
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1921 } |
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1922 |
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1923 // Tag all the children of this resource as to be explored |
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1924 std::list<int64_t> tmp; |
1247 | 1925 db_.GetChildrenInternalId(tmp, resource); |
440
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1926 for (std::list<int64_t>::const_iterator |
656 | 1927 it = tmp.begin(); it != tmp.end(); ++it) |
440
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1928 { |
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1929 toExplore.push(*it); |
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1930 } |
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1931 } |
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1932 } |
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1933 |
646 | 1934 if (countStudies == 0) |
1935 { | |
1936 countStudies = 1; | |
1937 } | |
1938 | |
1939 if (countSeries == 0) | |
1940 { | |
1941 countSeries = 1; | |
1942 } | |
1943 } | |
1944 | |
1945 | |
1946 | |
1947 void ServerIndex::GetStatistics(Json::Value& target, | |
1948 const std::string& publicId) | |
1949 { | |
1950 boost::mutex::scoped_lock lock(mutex_); | |
1951 | |
1952 ResourceType type; | |
1953 int64_t top; | |
1294 | 1954 if (!db_.LookupResource(top, type, publicId)) |
646 | 1955 { |
1956 throw OrthancException(ErrorCode_UnknownResource); | |
1957 } | |
1958 | |
1959 uint64_t uncompressedSize; | |
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1960 uint64_t diskSize; |
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1961 uint64_t dicomUncompressedSize; |
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1962 uint64_t dicomDiskSize; |
646 | 1963 unsigned int countStudies; |
1964 unsigned int countSeries; | |
1965 unsigned int countInstances; | |
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1966 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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1967 countSeries, countInstances, dicomDiskSize, dicomUncompressedSize, top, type); |
646 | 1968 |
440
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1969 target = Json::objectValue; |
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1970 target["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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1971 target["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
440
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1972 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
1310
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1973 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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1974 |
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1975 target["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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1976 target["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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1977 target["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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1978 target["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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1979 |
440
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1980 switch (type) |
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1981 { |
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1982 // Do NOT add "break" below this point! |
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1983 case ResourceType_Patient: |
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1984 target["CountStudies"] = countStudies; |
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1985 |
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1986 case ResourceType_Study: |
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1987 target["CountSeries"] = countSeries; |
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1988 |
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1989 case ResourceType_Series: |
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1990 target["CountInstances"] = countInstances; |
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1991 |
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1992 case ResourceType_Instance: |
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1993 default: |
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1994 break; |
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1995 } |
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1996 } |
511
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1997 |
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|
1998 |
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1999 void ServerIndex::GetStatistics(/* out */ uint64_t& diskSize, |
646 | 2000 /* out */ uint64_t& uncompressedSize, |
2001 /* out */ unsigned int& countStudies, | |
2002 /* out */ unsigned int& countSeries, | |
2003 /* out */ unsigned int& countInstances, | |
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2004 /* out */ uint64_t& dicomDiskSize, |
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2005 /* out */ uint64_t& dicomUncompressedSize, |
646 | 2006 const std::string& publicId) |
2007 { | |
2008 boost::mutex::scoped_lock lock(mutex_); | |
2009 | |
2010 ResourceType type; | |
2011 int64_t top; | |
1294 | 2012 if (!db_.LookupResource(top, type, publicId)) |
646 | 2013 { |
2014 throw OrthancException(ErrorCode_UnknownResource); | |
2015 } | |
2016 | |
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2017 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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2018 countSeries, countInstances, dicomDiskSize, |
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2019 dicomUncompressedSize, top, type); |
646 | 2020 } |
2021 | |
2022 | |
2665
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|
2023 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
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|
2024 unsigned int threadSleep) |
511
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2025 { |
2940
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2026 int stableAge; |
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|
2027 |
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|
2028 { |
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|
2029 OrthancConfiguration::ReaderLock lock; |
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2030 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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2031 } |
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2032 |
511
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2033 if (stableAge <= 0) |
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2034 { |
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2035 stableAge = 60; |
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2036 } |
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2037 |
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|
2038 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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2039 |
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2040 while (!that->done_) |
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2041 { |
2665
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|
2042 // Check for stable resources each few seconds |
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2043 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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2044 |
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2045 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 2046 |
511
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2047 while (!that->unstableResources_.IsEmpty() && |
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2048 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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2049 { |
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2050 // This DICOM resource has not received any new instance for |
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2051 // some time. It can be considered as stable. |
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2052 |
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2053 UnstableResourcePayload payload; |
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2054 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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|
2055 |
513 | 2056 // Ensure that the resource is still existing before logging the change |
1247 | 2057 if (that->db_.IsExistingResource(id)) |
511
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2058 { |
1177
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2059 switch (payload.GetResourceType()) |
513 | 2060 { |
1177
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2061 case ResourceType_Patient: |
1237 | 2062 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 2063 break; |
511
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2064 |
1177
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|
2065 case ResourceType_Study: |
1237 | 2066 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 2067 break; |
511
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2068 |
1177
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|
2069 case ResourceType_Series: |
1237 | 2070 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 2071 break; |
2072 | |
2073 default: | |
2074 throw OrthancException(ErrorCode_InternalError); | |
2075 } | |
2076 | |
2077 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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|
2078 } |
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|
2079 } |
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2080 } |
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|
2081 |
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|
2082 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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2083 } |
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2084 |
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|
2085 |
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|
2086 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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2087 Orthanc::ResourceType type, |
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|
2088 const std::string& publicId) |
511
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2089 { |
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|
2090 // WARNING: Before calling this method, "mutex_" must be locked. |
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|
2091 |
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|
2092 assert(type == Orthanc::ResourceType_Patient || |
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|
2093 type == Orthanc::ResourceType_Study || |
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|
2094 type == Orthanc::ResourceType_Series); |
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2095 |
1177
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|
2096 UnstableResourcePayload payload(type, publicId); |
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|
2097 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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|
2098 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
6b9b02a16e99
NewChildInstance change type
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|
2099 |
1237 | 2100 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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|
2101 } |
521 | 2102 |
2103 | |
2104 | |
3034
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changeset
|
2105 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result, |
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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diff
changeset
|
2106 ResourceType level, |
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|
2107 const DicomTag& tag, |
4941494b5dd8
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|
2108 const std::string& value) |
615 | 2109 { |
1727 | 2110 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2111 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2112 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2113 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2114 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2115 |
615 | 2116 result.clear(); |
2117 | |
3034
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|
2118 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true); |
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|
2119 |
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|
2120 std::vector<DatabaseConstraint> query; |
3073
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refactoring to reuse DatabaseConstraint in separate projects
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diff
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|
2121 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
3034
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2122 |
3075
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IDatabaseWrapper::ApplyLookupResources now returns lists
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|
2123 std::list<std::string> tmp; |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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2124 |
3034
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|
2125 { |
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changeset
|
2126 boost::mutex::scoped_lock lock(mutex_); |
3075
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|
2127 db_.ApplyLookupResources(tmp, NULL, query, level, 0); |
3034
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|
2128 } |
3075
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|
2129 |
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changeset
|
2130 CopyListToVector(result, tmp); |
615 | 2131 } |
2132 | |
2133 | |
699
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|
2134 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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|
2135 const std::string& publicId) |
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2136 { |
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|
2137 boost::mutex::scoped_lock lock(mutex_); |
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2138 |
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changeset
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2139 Transaction t(*this); |
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2140 |
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changeset
|
2141 ResourceType resourceType; |
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|
2142 int64_t resourceId; |
1294 | 2143 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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|
2144 { |
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changeset
|
2145 return StoreStatus_Failure; // Inexistent resource |
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|
2146 } |
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changeset
|
2147 |
704
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changeset
|
2148 // Remove possible previous attachment |
1247 | 2149 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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|
2150 |
704
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changeset
|
2151 // Locate the patient of the target resource |
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changeset
|
2152 int64_t patientId = resourceId; |
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changeset
|
2153 for (;;) |
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|
2154 { |
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changeset
|
2155 int64_t parent; |
1247 | 2156 if (db_.LookupParent(parent, patientId)) |
704
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diff
changeset
|
2157 { |
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changeset
|
2158 // We have not reached the patient level yet |
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diff
changeset
|
2159 patientId = parent; |
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changeset
|
2160 } |
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changeset
|
2161 else |
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changeset
|
2162 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2163 // We have reached the patient level |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2164 break; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2165 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2166 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2167 |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2168 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2169 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2170 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2171 |
1247 | 2172 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2173 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2174 if (IsUserContentType(attachment.GetContentType())) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2175 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2176 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2177 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2178 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2179 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2180 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2181 return StoreStatus_Success; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2182 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2183 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2184 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2185 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2186 FileContentType type) |
7592a48e97e4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2187 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2188 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2189 Transaction t(*this); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2190 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2191 ResourceType rtype; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2192 int64_t id; |
1294 | 2193 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2194 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2195 throw OrthancException(ErrorCode_UnknownResource); |
7592a48e97e4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2196 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2197 |
1247 | 2198 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2199 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2200 if (IsUserContentType(type)) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2201 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2202 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2203 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2204 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2205 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2206 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2207 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
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701
diff
changeset
|
2208 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2209 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2210 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2211 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2212 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2213 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2214 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2215 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2216 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2217 int64_t id; |
1294 | 2218 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2219 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2220 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2221 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2222 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2223 std::list<MetadataType> metadata; |
1247 | 2224 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2225 |
b067017a8a5b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2226 for (std::list<MetadataType>::const_iterator |
1304 | 2227 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2228 { |
b067017a8a5b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2229 std::string key = EnumerationToString(*it); |
1238 | 2230 |
2231 std::string value; | |
1247 | 2232 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2233 { |
2234 value.clear(); | |
2235 } | |
2236 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2237 target[key] = value; |
b067017a8a5b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
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|
2238 } |
b067017a8a5b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2239 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2240 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2241 } |
1218
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2242 |
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2243 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2244 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2245 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2246 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2247 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2248 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2249 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2250 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2251 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2252 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
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2665
diff
changeset
|
2253 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2254 { |
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saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2255 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2256 return db_.LookupGlobalProperty(value, property); |
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parents:
2665
diff
changeset
|
2257 } |
d26dd081df97
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2258 |
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saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2259 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2260 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2261 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2262 { |
1239 | 2263 std::string value; |
2668
d26dd081df97
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2264 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2265 if (LookupGlobalProperty(value, property)) |
1239 | 2266 { |
2267 return value; | |
2268 } | |
2269 else | |
2270 { | |
2271 return defaultValue; | |
2272 } | |
1218
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
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1198
diff
changeset
|
2273 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2274 |
1352 | 2275 |
2276 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2277 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2278 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2279 ResourceType levelOfInterest) |
1352 | 2280 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2281 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
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diff
changeset
|
2282 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
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parents:
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diff
changeset
|
2283 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2284 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2285 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2286 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2287 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2288 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2289 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2290 |
1352 | 2291 result.Clear(); |
2292 | |
2293 boost::mutex::scoped_lock lock(mutex_); | |
2294 | |
2295 // Lookup for the requested resource | |
2296 int64_t id; | |
2297 ResourceType type; | |
2298 if (!db_.LookupResource(id, type, publicId) || | |
2299 type != expectedType) | |
2300 { | |
2301 return false; | |
2302 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2303 |
a903d57d9f0c
adaptation of search with patient tags at study level
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diff
changeset
|
2304 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2305 { |
a903d57d9f0c
adaptation of search with patient tags at study level
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diff
changeset
|
2306 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2307 db_.GetMainDicomTags(tmp, id); |
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adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2308 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2309 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2310 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2311 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2312 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2313 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2314 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2315 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2316 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2317 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2318 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2319 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2320 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2321 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2322 } |
1352 | 2323 else |
2324 { | |
2325 db_.GetMainDicomTags(result, id); | |
2326 return true; | |
2327 } | |
2328 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2329 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2330 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2331 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2332 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2333 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2334 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2335 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2336 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2337 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2338 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2339 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2340 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2341 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2342 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2343 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2344 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2345 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2346 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2347 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2348 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2349 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2350 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2351 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2352 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2353 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2354 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2355 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2356 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2357 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2358 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2359 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2360 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2361 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2362 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2363 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2364 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2365 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2366 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2367 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2368 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2369 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2370 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2371 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2372 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2373 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2374 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2375 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2376 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2377 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2378 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2379 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2380 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2381 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2382 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2383 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2384 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2385 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2386 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2387 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2388 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2389 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2390 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2391 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2392 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2393 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2394 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2395 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2396 #endif |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2397 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2398 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2399 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2400 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2401 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2402 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2403 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2404 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2405 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2406 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2407 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2408 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2409 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2410 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2411 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2412 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2413 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2414 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2415 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2416 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2417 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2418 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2419 |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2420 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2421 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2422 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2423 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2424 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2425 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2426 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2427 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2428 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2429 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2430 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2431 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2432 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2433 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2434 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2435 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2436 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2437 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2438 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2439 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2440 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2441 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2442 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2443 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2444 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2445 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2446 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2447 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2448 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2449 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2450 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2451 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2452 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2453 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2454 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2455 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2456 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2457 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2458 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2459 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2460 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2461 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2462 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2463 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2464 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2465 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2466 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2467 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2468 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2469 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2470 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2471 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2472 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2473 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2474 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2475 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2476 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2477 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2478 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2479 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2480 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2481 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2482 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2483 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2484 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2485 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2486 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2487 content.AddResource(patient, ResourceType_Patient, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2488 content.AddResource(study, ResourceType_Study, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2489 content.AddResource(series, ResourceType_Series, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2490 content.AddResource(instance, ResourceType_Instance, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2491 db_.SetResourcesContent(content); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2492 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2493 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2494 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2495 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2496 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2497 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2498 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2499 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2500 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2501 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2502 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2503 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2504 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2505 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2506 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2507 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2508 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2509 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2510 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2511 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2512 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2513 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2514 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2515 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2516 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2517 |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2518 |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2519 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target, |
3027 | 2520 const DatabaseLookup& source, |
2521 ResourceType queryLevel) const | |
2522 { | |
2523 assert(mainDicomTagsRegistry_.get() != NULL); | |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2524 |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2525 target.clear(); |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2526 target.reserve(source.GetConstraintsCount()); |
3031 | 2527 |
3027 | 2528 for (size_t i = 0; i < source.GetConstraintsCount(); i++) |
2529 { | |
3031 | 2530 ResourceType level; |
2531 DicomTagType type; | |
3027 | 2532 |
3031 | 2533 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag()); |
2534 | |
2535 if (type == DicomTagType_Identifier || | |
2536 type == DicomTagType_Main) | |
3027 | 2537 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2538 // Use the fact that patient-level tags are copied at the study level |
3031 | 2539 if (level == ResourceType_Patient && |
2540 queryLevel != ResourceType_Patient) | |
3027 | 2541 { |
3031 | 2542 level = ResourceType_Study; |
3027 | 2543 } |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2544 |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3061
diff
changeset
|
2545 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type)); |
3027 | 2546 } |
2547 } | |
2548 } | |
2549 | |
2550 | |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2551 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId, |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3034
diff
changeset
|
2552 std::vector<std::string>* instancesId, |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2553 const DatabaseLookup& lookup, |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
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2554 ResourceType queryLevel, |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2555 size_t limit) |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2556 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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2557 std::vector<DatabaseConstraint> normalized; |
3027 | 2558 NormalizeLookup(normalized, lookup, queryLevel); |
2559 | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2560 std::list<std::string> resourcesList, instancesList; |
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IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
2561 |
3027 | 2562 { |
2563 boost::mutex::scoped_lock lock(mutex_); | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2564 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2565 if (instancesId == NULL) |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2566 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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2567 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
2568 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2569 else |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2570 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
2571 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2572 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
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|
2573 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2574 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2575 CopyListToVector(resourcesId, resourcesList); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2576 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2577 if (instancesId != NULL) |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2578 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2579 CopyListToVector(*instancesId, instancesList); |
3027 | 2580 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
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|
2581 } |
0 | 2582 } |