Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerContext.h @ 4462:da460bef88f8
"/modalities/{...}/query": New string argument "LocalAet"
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 20 Jan 2021 17:02:10 +0100 |
parents | 6831de40acd9 |
children | fe774d8e904b |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
224 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
34 #pragma once | |
35 | |
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36 #include "IServerListener.h" |
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37 #include "LuaScripting.h" |
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38 #include "OrthancHttpHandler.h" |
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39 #include "ServerIndex.h" |
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40 #include "ServerJobs/IStorageCommitmentFactory.h" |
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41 |
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42 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h" |
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43 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h" |
4045 | 44 #include "../../OrthancFramework/Sources/DicomParsing/IDicomTranscoder.h" |
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45 #include "../../OrthancFramework/Sources/DicomParsing/ParsedDicomCache.h" |
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46 #include "../../OrthancFramework/Sources/MultiThreading/Semaphore.h" |
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47 |
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48 |
224 | 49 namespace Orthanc |
50 { | |
3097 | 51 class DicomInstanceToStore; |
52 class IStorageArea; | |
53 class JobsEngine; | |
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54 class MetricsRegistry; |
3085 | 55 class OrthancPlugins; |
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56 class ParsedDicomFile; |
3097 | 57 class RestApiOutput; |
58 class SetOfInstancesJob; | |
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59 class SharedArchive; |
3097 | 60 class SharedMessageQueue; |
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61 class StorageCommitmentReports; |
3097 | 62 |
3085 | 63 |
227
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64 /** |
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65 * This class is responsible for maintaining the storage area on the |
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66 * filesystem (including compression), as well as the index of the |
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67 * DICOM store. It implements the required locking mechanisms. |
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68 **/ |
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69 class ServerContext : |
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70 public IStorageCommitmentFactory, |
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71 public IDicomTranscoder, |
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72 private JobsRegistry::IObserver |
224 | 73 { |
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74 public: |
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75 class ILookupVisitor : public boost::noncopyable |
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76 { |
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77 public: |
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78 virtual ~ILookupVisitor() |
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79 { |
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80 } |
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81 |
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82 virtual bool IsDicomAsJsonNeeded() const = 0; |
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83 |
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84 virtual void MarkAsComplete() = 0; |
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85 |
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86 // NB: "dicomAsJson" must *not* be deleted, and can be NULL if |
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87 // "!IsDicomAsJsonNeeded()" |
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88 virtual void Visit(const std::string& publicId, |
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89 const std::string& instanceId, |
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90 const DicomMap& mainDicomTags, |
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91 const Json::Value* dicomAsJson) = 0; |
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92 }; |
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93 |
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94 |
224 | 95 private: |
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96 class LuaServerListener : public IServerListener |
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97 { |
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98 private: |
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99 ServerContext& context_; |
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100 |
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101 public: |
4204 | 102 explicit LuaServerListener(ServerContext& context) : |
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103 context_(context) |
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104 { |
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105 } |
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106 |
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107 virtual void SignalStoredInstance(const std::string& publicId, |
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108 const DicomInstanceToStore& instance, |
4205 | 109 const Json::Value& simplifiedTags) ORTHANC_OVERRIDE |
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110 { |
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111 context_.mainLua_.SignalStoredInstance(publicId, instance, simplifiedTags); |
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112 } |
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113 |
4205 | 114 virtual void SignalChange(const ServerIndexChange& change) ORTHANC_OVERRIDE |
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115 { |
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116 context_.mainLua_.SignalChange(change); |
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117 } |
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118 |
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119 virtual bool FilterIncomingInstance(const DicomInstanceToStore& instance, |
4205 | 120 const Json::Value& simplified) ORTHANC_OVERRIDE |
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121 { |
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122 return context_.filterLua_.FilterIncomingInstance(instance, simplified); |
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123 } |
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124 }; |
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125 |
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126 class ServerListener |
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127 { |
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128 private: |
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129 IServerListener *listener_; |
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130 std::string description_; |
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131 |
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132 public: |
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133 ServerListener(IServerListener& listener, |
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134 const std::string& description) : |
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135 listener_(&listener), |
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136 description_(description) |
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137 { |
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138 } |
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139 |
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140 IServerListener& GetListener() |
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141 { |
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142 return *listener_; |
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143 } |
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144 |
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145 const std::string& GetDescription() |
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146 { |
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147 return description_; |
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148 } |
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149 }; |
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150 |
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151 typedef std::list<ServerListener> ServerListeners; |
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152 |
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153 |
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154 static void ChangeThread(ServerContext* that, |
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155 unsigned int sleepDelay); |
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156 |
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157 static void SaveJobsThread(ServerContext* that, |
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158 unsigned int sleepDelay); |
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159 |
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160 void ReadDicomAsJsonInternal(std::string& result, |
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161 const std::string& instancePublicId); |
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162 |
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163 void SaveJobsEngine(); |
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164 |
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165 virtual void SignalJobSubmitted(const std::string& jobId) ORTHANC_OVERRIDE; |
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166 |
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167 virtual void SignalJobSuccess(const std::string& jobId) ORTHANC_OVERRIDE; |
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168 |
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169 virtual void SignalJobFailure(const std::string& jobId) ORTHANC_OVERRIDE; |
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170 |
224 | 171 ServerIndex index_; |
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172 IStorageArea& area_; |
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173 |
236 | 174 bool compressionEnabled_; |
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175 bool storeMD5_; |
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176 |
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177 Semaphore largeDicomThrottler_; // New in Orthanc 1.9.0 (notably for very large DICOM files in WSI) |
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178 ParsedDicomCache dicomCache_; |
224 | 179 |
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180 LuaScripting mainLua_; |
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181 LuaScripting filterLua_; |
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182 LuaServerListener luaListener_; |
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183 std::unique_ptr<SharedArchive> mediaArchive_; |
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184 |
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185 // The "JobsEngine" must be *after* "LuaScripting", as |
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186 // "LuaScripting" embeds "LuaJobManager" that registers as an |
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187 // observer to "SequenceOfOperationsJob", whose lifetime |
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188 // corresponds to that of "JobsEngine". It must also be after |
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189 // "mediaArchive_", as jobs might access this archive. |
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190 JobsEngine jobsEngine_; |
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191 |
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192 #if ORTHANC_ENABLE_PLUGINS == 1 |
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193 OrthancPlugins* plugins_; |
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194 #endif |
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195 |
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196 ServerListeners listeners_; |
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197 boost::shared_mutex listenersMutex_; |
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198 |
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199 bool done_; |
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200 bool haveJobsChanged_; |
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201 bool isJobsEngineUnserialized_; |
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202 SharedMessageQueue pendingChanges_; |
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203 boost::thread changeThread_; |
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204 boost::thread saveJobsThread_; |
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205 |
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206 std::unique_ptr<SharedArchive> queryRetrieveArchive_; |
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207 std::string defaultLocalAet_; |
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208 OrthancHttpHandler httpHandler_; |
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209 bool saveJobs_; |
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210 FindStorageAccessMode findStorageAccessMode_; |
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211 unsigned int limitFindInstances_; |
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212 unsigned int limitFindResults_; |
1368 | 213 |
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214 std::unique_ptr<MetricsRegistry> metricsRegistry_; |
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215 bool isHttpServerSecure_; |
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216 bool isExecuteLuaEnabled_; |
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217 bool overwriteInstances_; |
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218 |
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219 std::unique_ptr<StorageCommitmentReports> storageCommitmentReports_; |
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220 |
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221 bool transcodeDicomProtocol_; |
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222 std::unique_ptr<IDicomTranscoder> dcmtkTranscoder_; |
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223 BuiltinDecoderTranscoderOrder builtinDecoderTranscoderOrder_; |
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224 bool isIngestTranscoding_; |
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225 DicomTransferSyntax ingestTransferSyntax_; |
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226 bool ingestTranscodingOfUncompressed_; |
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227 bool ingestTranscodingOfCompressed_; |
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228 |
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229 StoreStatus StoreAfterTranscoding(std::string& resultPublicId, |
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230 DicomInstanceToStore& dicom, |
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231 StoreInstanceMode mode); |
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232 |
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233 void ApplyInternal(ILookupVisitor& visitor, |
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234 const DatabaseLookup& lookup, |
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235 ResourceType queryLevel, |
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236 size_t since, |
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237 size_t limit); |
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238 |
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239 void PublishDicomCacheMetrics(); |
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240 |
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241 // This DicomModification object is intended to be used as a |
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242 // "rules engine" when de-identifying logs for C-Find, C-Get, and |
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243 // C-Move queries (new in Orthanc 1.8.2) |
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244 DicomModification logsDeidentifierRules_; |
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245 bool deidentifyLogs_; |
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246 |
224 | 247 public: |
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248 class DicomCacheLocker : public boost::noncopyable |
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249 { |
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250 private: |
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251 ServerContext& context_; |
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252 std::string instancePublicId_; |
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253 std::unique_ptr<ParsedDicomCache::Accessor> accessor_; |
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254 std::unique_ptr<ParsedDicomFile> dicom_; |
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255 size_t dicomSize_; |
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256 std::unique_ptr<Semaphore::Locker> largeDicomLocker_; |
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257 |
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258 public: |
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259 DicomCacheLocker(ServerContext& context, |
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260 const std::string& instancePublicId); |
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261 |
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262 ~DicomCacheLocker(); |
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263 |
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264 ParsedDicomFile& GetDicom() const; |
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265 }; |
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266 |
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267 ServerContext(IDatabaseWrapper& database, |
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268 IStorageArea& area, |
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269 bool unitTesting, |
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270 size_t maxCompletedJobs); |
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271 |
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272 ~ServerContext(); |
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273 |
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274 void SetupJobsEngine(bool unitTesting, |
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275 bool loadJobsFromDatabase); |
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276 |
224 | 277 ServerIndex& GetIndex() |
278 { | |
279 return index_; | |
280 } | |
281 | |
236 | 282 void SetCompressionEnabled(bool enabled); |
283 | |
284 bool IsCompressionEnabled() const | |
285 { | |
286 return compressionEnabled_; | |
287 } | |
288 | |
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289 void RemoveFile(const std::string& fileUuid, |
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290 FileContentType type); |
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291 |
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292 bool AddAttachment(const std::string& resourceId, |
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293 FileContentType attachmentType, |
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294 const void* data, |
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295 size_t size); |
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296 |
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297 StoreStatus Store(std::string& resultPublicId, |
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298 DicomInstanceToStore& dicom, |
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299 StoreInstanceMode mode); |
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300 |
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301 void AnswerAttachment(RestApiOutput& output, |
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302 const std::string& resourceId, |
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303 FileContentType content); |
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304 |
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305 void ChangeAttachmentCompression(const std::string& resourceId, |
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306 FileContentType attachmentType, |
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307 CompressionType compression); |
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308 |
2127 | 309 void ReadDicomAsJson(std::string& result, |
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310 const std::string& instancePublicId, |
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311 const std::set<DicomTag>& ignoreTagLength); |
2127 | 312 |
2124 | 313 void ReadDicomAsJson(Json::Value& result, |
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314 const std::string& instancePublicId, |
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315 const std::set<DicomTag>& ignoreTagLength); |
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316 |
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317 void ReadDicomAsJson(std::string& result, |
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318 const std::string& instancePublicId) |
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319 { |
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320 std::set<DicomTag> ignoreTagLength; |
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321 ReadDicomAsJson(result, instancePublicId, ignoreTagLength); |
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322 } |
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323 |
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324 void ReadDicomAsJson(Json::Value& result, |
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325 const std::string& instancePublicId) |
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326 { |
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327 std::set<DicomTag> ignoreTagLength; |
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328 ReadDicomAsJson(result, instancePublicId, ignoreTagLength); |
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329 } |
227
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330 |
2124 | 331 void ReadDicom(std::string& dicom, |
332 const std::string& instancePublicId) | |
333 { | |
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334 ReadAttachment(dicom, instancePublicId, FileContentType_Dicom, true); |
2124 | 335 } |
336 | |
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337 // TODO CACHING MECHANISM AT THIS POINT |
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338 void ReadAttachment(std::string& result, |
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339 const std::string& instancePublicId, |
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340 FileContentType content, |
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341 bool uncompressIfNeeded); |
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342 |
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343 void ReadAttachment(std::string& result, |
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344 const FileInfo& attachment); |
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345 |
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346 void SetStoreMD5ForAttachments(bool storeMD5); |
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347 |
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348 bool IsStoreMD5ForAttachments() const |
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349 { |
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350 return storeMD5_; |
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351 } |
771 | 352 |
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353 JobsEngine& GetJobsEngine() |
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354 { |
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355 return jobsEngine_; |
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356 } |
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357 |
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Plugins can retrieve the path to Orthanc and to its configuration file
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358 bool DeleteResource(Json::Value& target, |
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359 const std::string& uuid, |
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360 ResourceType expectedType); |
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361 |
1198 | 362 void SignalChange(const ServerIndexChange& change); |
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363 |
1368 | 364 SharedArchive& GetQueryRetrieveArchive() |
365 { | |
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366 return *queryRetrieveArchive_; |
1368 | 367 } |
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368 |
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369 SharedArchive& GetMediaArchive() |
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370 { |
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371 return *mediaArchive_; |
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372 } |
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373 |
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374 const std::string& GetDefaultLocalApplicationEntityTitle() const |
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375 { |
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376 return defaultLocalAet_; |
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377 } |
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378 |
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379 LuaScripting& GetLuaScripting() |
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380 { |
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381 return mainLua_; |
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382 } |
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383 |
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384 OrthancHttpHandler& GetHttpHandler() |
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385 { |
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386 return httpHandler_; |
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387 } |
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388 |
1447
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389 void Stop(); |
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390 |
3021
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391 void Apply(ILookupVisitor& visitor, |
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392 const DatabaseLookup& lookup, |
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393 ResourceType queryLevel, |
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394 size_t since, |
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395 size_t limit); |
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396 |
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397 bool LookupOrReconstructMetadata(std::string& target, |
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398 const std::string& publicId, |
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399 ResourceType level, |
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400 MetadataType type); |
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401 |
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402 |
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403 /** |
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404 * Management of the plugins |
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405 **/ |
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406 |
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407 #if ORTHANC_ENABLE_PLUGINS == 1 |
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408 void SetPlugins(OrthancPlugins& plugins); |
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409 |
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410 void ResetPlugins(); |
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411 |
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fix build with plugins disabled
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|
412 const OrthancPlugins& GetPlugins() const; |
1741
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OrthancStarted and OrthancStopped events in plugins
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413 |
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OrthancStarted and OrthancStopped events in plugins
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|
414 OrthancPlugins& GetPlugins(); |
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415 #endif |
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416 |
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417 bool HasPlugins() const; |
2626 | 418 |
419 void AddChildInstances(SetOfInstancesJob& job, | |
420 const std::string& publicId); | |
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421 |
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422 void SignalUpdatedModalities(); |
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423 |
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|
424 void SignalUpdatedPeers(); |
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425 |
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|
426 MetricsRegistry& GetMetricsRegistry() |
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427 { |
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428 return *metricsRegistry_; |
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429 } |
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430 |
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431 void SetHttpServerSecure(bool isSecure) |
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432 { |
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433 isHttpServerSecure_ = isSecure; |
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434 } |
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435 |
3534
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|
436 bool IsHttpServerSecure() const |
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437 { |
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438 return isHttpServerSecure_; |
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439 } |
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440 |
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441 void SetExecuteLuaEnabled(bool enabled) |
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442 { |
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443 isExecuteLuaEnabled_ = enabled; |
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444 } |
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445 |
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446 bool IsExecuteLuaEnabled() const |
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447 { |
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448 return isExecuteLuaEnabled_; |
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449 } |
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450 |
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451 void SetOverwriteInstances(bool overwrite) |
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452 { |
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453 overwriteInstances_ = overwrite; |
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454 } |
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455 |
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456 bool IsOverwriteInstances() const |
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457 { |
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458 return overwriteInstances_; |
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459 } |
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460 |
3660
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461 virtual IStorageCommitmentFactory::ILookupHandler* |
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462 CreateStorageCommitment(const std::string& jobId, |
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463 const std::string& transactionUid, |
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464 const std::vector<std::string>& sopClassUids, |
3662
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465 const std::vector<std::string>& sopInstanceUids, |
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466 const std::string& remoteAet, |
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467 const std::string& calledAet) ORTHANC_OVERRIDE; |
3736
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|
468 |
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469 StorageCommitmentReports& GetStorageCommitmentReports() |
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470 { |
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471 return *storageCommitmentReports_; |
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472 } |
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473 |
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474 ImageAccessor* DecodeDicomFrame(const std::string& publicId, |
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475 unsigned int frameIndex); |
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476 |
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477 ImageAccessor* DecodeDicomFrame(const DicomInstanceToStore& dicom, |
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478 unsigned int frameIndex); |
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479 |
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480 ImageAccessor* DecodeDicomFrame(const void* dicom, |
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481 size_t size, |
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482 unsigned int frameIndex); |
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483 |
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|
484 void StoreWithTranscoding(std::string& sopClassUid, |
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485 std::string& sopInstanceUid, |
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486 DicomStoreUserConnection& connection, |
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487 const std::string& dicom, |
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488 bool hasMoveOriginator, |
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489 const std::string& moveOriginatorAet, |
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490 uint16_t moveOriginatorId); |
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|
491 |
3930
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diff
changeset
|
492 // This method can be used even if the global option |
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493 // "TranscodeDicomProtocol" is set to "false" |
3944
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494 virtual bool Transcode(DicomImage& target, |
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495 DicomImage& source /* in, "GetParsed()" possibly modified */, |
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496 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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|
497 bool allowNewSopInstanceUid) ORTHANC_OVERRIDE; |
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498 |
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499 bool IsTranscodeDicomProtocol() const |
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500 { |
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501 return transcodeDicomProtocol_; |
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502 } |
4375
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New config option "DeidentifyDimseQueryLogs"
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|
503 |
4376
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504 const std::string& GetDeidentifiedContent(const DicomElement& element) const; |
224 | 505 }; |
506 } |