Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 3096:d9eb978a1039 db-changes
cont
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Sat, 05 Jan 2019 18:27:11 +0100 |
parents | 61da3c9b4121 |
children | 2e1711f80f74 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
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41 #include "../Core/DicomFormat/DicomArray.h" |
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42 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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43 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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44 #include "../Core/Logging.h" |
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45 #include "../Core/Toolbox.h" |
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46 |
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47 #include "Database/ResourcesContent.h" |
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48 #include "DicomInstanceToStore.h" |
8 | 49 #include "EmbeddedResources.h" |
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50 #include "OrthancConfiguration.h" |
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51 #include "Search/DatabaseLookup.h" |
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52 #include "Search/DicomTagConstraint.h" |
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53 #include "ServerContext.h" |
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54 #include "ServerIndexChange.h" |
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55 #include "ServerToolbox.h" |
0 | 56 |
57 #include <boost/lexical_cast.hpp> | |
58 #include <stdio.h> | |
59 | |
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60 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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61 |
62 | 62 namespace Orthanc |
0 | 63 { |
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64 static void CopyListToVector(std::vector<std::string>& target, |
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65 const std::list<std::string>& source) |
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66 { |
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67 target.resize(source.size()); |
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68 |
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69 size_t pos = 0; |
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70 |
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71 for (std::list<std::string>::const_iterator |
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72 it = source.begin(); it != source.end(); ++it) |
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73 { |
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74 target[pos] = *it; |
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75 pos ++; |
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76 } |
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77 } |
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78 |
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79 |
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80 class ServerIndex::Listener : public IDatabaseListener |
0 | 81 { |
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82 private: |
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83 struct FileToRemove |
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84 { |
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85 private: |
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86 std::string uuid_; |
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87 FileContentType type_; |
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88 |
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89 public: |
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90 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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91 type_(info.GetContentType()) |
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92 { |
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93 } |
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94 |
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95 const std::string& GetUuid() const |
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96 { |
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97 return uuid_; |
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98 } |
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99 |
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100 FileContentType GetContentType() const |
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101 { |
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102 return type_; |
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103 } |
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104 }; |
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105 |
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106 ServerContext& context_; |
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107 bool hasRemainingLevel_; |
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108 ResourceType remainingType_; |
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109 std::string remainingPublicId_; |
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110 std::list<FileToRemove> pendingFilesToRemove_; |
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111 std::list<ServerIndexChange> pendingChanges_; |
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112 uint64_t sizeOfFilesToRemove_; |
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113 bool insideTransaction_; |
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114 |
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115 void Reset() |
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116 { |
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117 sizeOfFilesToRemove_ = 0; |
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118 hasRemainingLevel_ = false; |
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119 pendingFilesToRemove_.clear(); |
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120 pendingChanges_.clear(); |
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121 } |
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122 |
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123 public: |
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124 Listener(ServerContext& context) : context_(context), |
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125 insideTransaction_(false) |
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126 { |
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127 Reset(); |
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128 assert(ResourceType_Patient < ResourceType_Study && |
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129 ResourceType_Study < ResourceType_Series && |
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130 ResourceType_Series < ResourceType_Instance); |
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131 } |
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132 |
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133 void StartTransaction() |
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134 { |
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135 Reset(); |
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136 insideTransaction_ = true; |
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137 } |
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138 |
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139 void EndTransaction() |
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140 { |
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141 insideTransaction_ = false; |
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142 } |
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143 |
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144 uint64_t GetSizeOfFilesToRemove() |
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145 { |
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146 return sizeOfFilesToRemove_; |
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147 } |
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148 |
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149 void CommitFilesToRemove() |
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150 { |
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151 for (std::list<FileToRemove>::const_iterator |
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152 it = pendingFilesToRemove_.begin(); |
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153 it != pendingFilesToRemove_.end(); ++it) |
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154 { |
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155 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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156 } |
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157 } |
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158 |
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159 void CommitChanges() |
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160 { |
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161 for (std::list<ServerIndexChange>::const_iterator |
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162 it = pendingChanges_.begin(); |
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163 it != pendingChanges_.end(); ++it) |
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164 { |
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165 context_.SignalChange(*it); |
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166 } |
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167 } |
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168 |
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169 virtual void SignalRemainingAncestor(ResourceType parentType, |
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170 const std::string& publicId) |
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171 { |
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172 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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173 |
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174 if (hasRemainingLevel_) |
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175 { |
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176 if (parentType < remainingType_) |
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177 { |
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178 remainingType_ = parentType; |
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179 remainingPublicId_ = publicId; |
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180 } |
1158 | 181 } |
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182 else |
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183 { |
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184 hasRemainingLevel_ = true; |
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185 remainingType_ = parentType; |
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186 remainingPublicId_ = publicId; |
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187 } |
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188 } |
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189 |
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190 virtual void SignalFileDeleted(const FileInfo& info) |
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191 { |
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192 assert(Toolbox::IsUuid(info.GetUuid())); |
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193 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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194 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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195 } |
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196 |
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197 virtual void SignalChange(const ServerIndexChange& change) |
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198 { |
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199 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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200 << EnumerationToString(change.GetResourceType()) << ": " |
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201 << EnumerationToString(change.GetChangeType()); |
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202 |
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203 if (insideTransaction_) |
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204 { |
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205 pendingChanges_.push_back(change); |
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206 } |
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207 else |
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208 { |
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209 context_.SignalChange(change); |
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210 } |
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211 } |
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212 |
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213 bool HasRemainingLevel() const |
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214 { |
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215 return hasRemainingLevel_; |
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216 } |
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217 |
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218 ResourceType GetRemainingType() const |
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219 { |
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220 assert(HasRemainingLevel()); |
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221 return remainingType_; |
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222 } |
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223 |
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224 const std::string& GetRemainingPublicId() const |
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225 { |
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226 assert(HasRemainingLevel()); |
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227 return remainingPublicId_; |
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228 } |
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229 }; |
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231 | |
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232 class ServerIndex::Transaction |
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233 { |
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234 private: |
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235 ServerIndex& index_; |
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236 std::auto_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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237 bool isCommitted_; |
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238 |
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239 public: |
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240 Transaction(ServerIndex& index) : |
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241 index_(index), |
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242 isCommitted_(false) |
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243 { |
1247 | 244 transaction_.reset(index_.db_.StartTransaction()); |
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245 transaction_->Begin(); |
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246 |
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247 index_.listener_->StartTransaction(); |
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248 } |
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249 |
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250 ~Transaction() |
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251 { |
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252 index_.listener_->EndTransaction(); |
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253 |
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254 if (!isCommitted_) |
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255 { |
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256 transaction_->Rollback(); |
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257 } |
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258 } |
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259 |
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260 void Commit(uint64_t sizeOfAddedFiles) |
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261 { |
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262 if (!isCommitted_) |
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263 { |
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264 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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265 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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266 |
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267 transaction_->Commit(delta); |
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268 |
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269 // We can remove the files once the SQLite transaction has |
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270 // been successfully committed. Some files might have to be |
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271 // deleted because of recycling. |
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272 index_.listener_->CommitFilesToRemove(); |
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273 |
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274 // Send all the pending changes to the Orthanc plugins |
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275 index_.listener_->CommitChanges(); |
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276 |
278
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277 isCommitted_ = true; |
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278 } |
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279 } |
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280 }; |
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281 |
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282 |
1177
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283 class ServerIndex::UnstableResourcePayload |
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284 { |
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285 private: |
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286 ResourceType type_; |
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287 std::string publicId_; |
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288 boost::posix_time::ptime time_; |
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289 |
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290 public: |
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291 UnstableResourcePayload() : type_(ResourceType_Instance) |
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292 { |
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293 } |
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294 |
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295 UnstableResourcePayload(Orthanc::ResourceType type, |
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296 const std::string& publicId) : |
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297 type_(type), |
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298 publicId_(publicId) |
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299 { |
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300 time_ = boost::posix_time::second_clock::local_time(); |
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301 } |
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302 |
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303 unsigned int GetAge() const |
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304 { |
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305 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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306 } |
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307 |
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308 ResourceType GetResourceType() const |
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309 { |
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310 return type_; |
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311 } |
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312 |
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313 const std::string& GetPublicId() const |
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314 { |
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315 return publicId_; |
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316 } |
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317 }; |
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318 |
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319 |
3027 | 320 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable |
321 { | |
322 private: | |
323 class TagInfo | |
324 { | |
325 private: | |
326 ResourceType level_; | |
327 DicomTagType type_; | |
328 | |
329 public: | |
330 TagInfo() | |
331 { | |
332 } | |
333 | |
334 TagInfo(ResourceType level, | |
335 DicomTagType type) : | |
336 level_(level), | |
337 type_(type) | |
338 { | |
339 } | |
340 | |
341 ResourceType GetLevel() const | |
342 { | |
343 return level_; | |
344 } | |
345 | |
346 DicomTagType GetType() const | |
347 { | |
348 return type_; | |
349 } | |
350 }; | |
351 | |
352 typedef std::map<DicomTag, TagInfo> Registry; | |
353 | |
354 | |
355 Registry registry_; | |
356 | |
357 void LoadTags(ResourceType level) | |
358 { | |
359 const DicomTag* tags = NULL; | |
360 size_t size; | |
361 | |
362 ServerToolbox::LoadIdentifiers(tags, size, level); | |
363 | |
364 for (size_t i = 0; i < size; i++) | |
365 { | |
366 if (registry_.find(tags[i]) == registry_.end()) | |
367 { | |
368 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier); | |
369 } | |
370 else | |
371 { | |
372 // These patient-level tags are copied in the study level | |
373 assert(level == ResourceType_Study && | |
374 (tags[i] == DICOM_TAG_PATIENT_ID || | |
375 tags[i] == DICOM_TAG_PATIENT_NAME || | |
376 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE)); | |
377 } | |
378 } | |
379 | |
380 DicomMap::LoadMainDicomTags(tags, size, level); | |
381 | |
382 for (size_t i = 0; i < size; i++) | |
383 { | |
384 if (registry_.find(tags[i]) == registry_.end()) | |
385 { | |
386 registry_[tags[i]] = TagInfo(level, DicomTagType_Main); | |
387 } | |
388 } | |
389 } | |
390 | |
391 public: | |
392 MainDicomTagsRegistry() | |
393 { | |
394 LoadTags(ResourceType_Patient); | |
395 LoadTags(ResourceType_Study); | |
396 LoadTags(ResourceType_Series); | |
397 LoadTags(ResourceType_Instance); | |
398 } | |
399 | |
400 void LookupTag(ResourceType& level, | |
401 DicomTagType& type, | |
402 const DicomTag& tag) const | |
403 { | |
404 Registry::const_iterator it = registry_.find(tag); | |
405 | |
406 if (it == registry_.end()) | |
407 { | |
408 // Default values | |
409 level = ResourceType_Instance; | |
410 type = DicomTagType_Generic; | |
411 } | |
412 else | |
413 { | |
414 level = it->second.GetLevel(); | |
415 type = it->second.GetType(); | |
416 } | |
417 } | |
418 }; | |
419 | |
420 | |
212 | 421 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 422 const std::string& uuid, |
202 | 423 ResourceType expectedType) |
0 | 424 { |
206
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425 boost::mutex::scoped_lock lock(mutex_); |
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426 |
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427 Transaction t(*this); |
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428 |
202 | 429 int64_t id; |
430 ResourceType type; | |
1294 | 431 if (!db_.LookupResource(id, type, uuid) || |
202 | 432 expectedType != type) |
0 | 433 { |
434 return false; | |
435 } | |
202 | 436 |
1247 | 437 db_.DeleteResource(id); |
0 | 438 |
202 | 439 if (listener_->HasRemainingLevel()) |
0 | 440 { |
202 | 441 ResourceType type = listener_->GetRemainingType(); |
442 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 443 |
444 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 445 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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446 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 447 target["RemainingAncestor"]["ID"] = uuid; |
448 } | |
449 else | |
450 { | |
451 target["RemainingAncestor"] = Json::nullValue; | |
452 } | |
453 | |
278
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454 t.Commit(0); |
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455 |
0 | 456 return true; |
457 } | |
458 | |
459 | |
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460 void ServerIndex::FlushThread(ServerIndex* that, |
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461 unsigned int threadSleep) |
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462 { |
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463 // By default, wait for 10 seconds before flushing |
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464 unsigned int sleep = 10; |
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465 |
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466 try |
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467 { |
744 | 468 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 469 std::string sleepString; |
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470 |
1247 | 471 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 472 Toolbox::IsInteger(sleepString)) |
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473 { |
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474 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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475 } |
511
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476 } |
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477 catch (boost::bad_lexical_cast&) |
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478 { |
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479 } |
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480 |
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481 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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482 |
511
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483 unsigned int count = 0; |
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484 |
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485 while (!that->done_) |
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486 { |
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487 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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488 count++; |
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489 if (count < sleep) |
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490 { |
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491 continue; |
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492 } |
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493 |
2217 | 494 Logging::Flush(); |
495 | |
511
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496 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 497 that->db_.FlushToDisk(); |
511
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498 count = 0; |
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499 } |
511
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500 |
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501 LOG(INFO) << "Stopping the database flushing thread"; |
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502 } |
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503 |
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504 |
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505 static bool ComputeExpectedNumberOfInstances(int64_t& target, |
433 | 506 const DicomMap& dicomSummary) |
507 { | |
508 try | |
509 { | |
656 | 510 const DicomValue* value; |
511 const DicomValue* value2; | |
512 | |
433 | 513 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
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514 !value->IsNull() && |
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515 !value->IsBinary() && |
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516 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL && |
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517 !value2->IsNull() && |
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518 !value2->IsBinary()) |
433 | 519 { |
520 // Patch for series with temporal positions thanks to Will Ryder | |
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521 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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522 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
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523 target = imagesInAcquisition * countTemporalPositions; |
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524 return (target > 0); |
433 | 525 } |
526 | |
527 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
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528 !value->IsNull() && |
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529 !value->IsBinary() && |
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530 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL && |
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531 !value2->IsBinary() && |
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532 !value2->IsNull()) |
433 | 533 { |
534 // Support of Cardio-PET images | |
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535 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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536 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
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537 target = numberOfSlices * numberOfTimeSlices; |
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538 return (target > 0); |
433 | 539 } |
540 | |
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541 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL && |
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542 !value->IsNull() && |
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543 !value->IsBinary()) |
433 | 544 { |
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545 target = boost::lexical_cast<int64_t>(value->GetContent()); |
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546 return (target > 0); |
433 | 547 } |
548 } | |
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549 catch (OrthancException&) |
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550 { |
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551 } |
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552 catch (boost::bad_lexical_cast&) |
433 | 553 { |
554 } | |
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555 |
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556 return false; |
433 | 557 } |
558 | |
559 | |
1237 | 560 |
561 | |
1238 | 562 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 563 int64_t id, |
564 MetadataType type) | |
565 { | |
1238 | 566 std::string s; |
1247 | 567 if (!db_.LookupMetadata(s, id, type)) |
1237 | 568 { |
569 return false; | |
570 } | |
571 | |
572 try | |
573 { | |
1238 | 574 result = boost::lexical_cast<int64_t>(s); |
1237 | 575 return true; |
576 } | |
577 catch (boost::bad_lexical_cast&) | |
578 { | |
579 return false; | |
580 } | |
581 } | |
582 | |
583 | |
1297 | 584 void ServerIndex::LogChange(int64_t internalId, |
585 ChangeType changeType, | |
586 ResourceType resourceType, | |
587 const std::string& publicId) | |
588 { | |
589 ServerIndexChange change(changeType, resourceType, publicId); | |
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590 |
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591 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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592 { |
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593 db_.LogChange(internalId, change); |
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594 } |
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595 |
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596 assert(listener_.get() != NULL); |
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597 listener_->SignalChange(change); |
1297 | 598 } |
599 | |
1237 | 600 |
601 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
602 { | |
603 std::string oldValue; | |
604 | |
1247 | 605 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 606 { |
607 uint64_t oldNumber; | |
608 | |
609 try | |
610 { | |
611 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 612 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 613 return oldNumber + 1; |
614 } | |
615 catch (boost::bad_lexical_cast&) | |
616 { | |
617 throw OrthancException(ErrorCode_InternalError); | |
618 } | |
619 } | |
620 else | |
621 { | |
622 // Initialize the sequence at "1" | |
1247 | 623 db_.SetGlobalProperty(property, "1"); |
1237 | 624 return 1; |
625 } | |
626 } | |
627 | |
628 | |
629 | |
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630 ServerIndex::ServerIndex(ServerContext& context, |
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631 IDatabaseWrapper& db, |
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632 unsigned int threadSleep) : |
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633 done_(false), |
1247 | 634 db_(db), |
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635 maximumStorageSize_(0), |
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636 maximumPatients_(0), |
3027 | 637 overwrite_(false), |
638 mainDicomTagsRegistry_(new MainDicomTagsRegistry) | |
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639 { |
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640 listener_.reset(new Listener(context)); |
1247 | 641 db_.SetListener(*listener_); |
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642 |
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643 // Initial recycling if the parameters have changed since the last |
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644 // execution of Orthanc |
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645 StandaloneRecycling(); |
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646 |
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647 if (db.HasFlushToDisk()) |
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648 { |
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649 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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650 } |
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651 |
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652 unstableResourcesMonitorThread_ = boost::thread |
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653 (UnstableResourcesMonitorThread, this, threadSleep); |
206
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654 } |
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655 |
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656 |
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657 |
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658 ServerIndex::~ServerIndex() |
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659 { |
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660 if (!done_) |
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661 { |
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662 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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663 Stop(); |
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664 } |
0 | 665 } |
666 | |
667 | |
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668 |
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669 void ServerIndex::Stop() |
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670 { |
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671 if (!done_) |
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672 { |
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673 done_ = true; |
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674 |
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675 if (db_.HasFlushToDisk() && |
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676 flushThread_.joinable()) |
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677 { |
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678 flushThread_.join(); |
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679 } |
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680 |
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681 if (unstableResourcesMonitorThread_.joinable()) |
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682 { |
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683 unstableResourcesMonitorThread_.join(); |
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684 } |
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685 } |
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686 } |
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687 |
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688 |
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689 static void SetInstanceMetadata(ResourcesContent& content, |
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690 std::map<MetadataType, std::string>& instanceMetadata, |
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691 int64_t instance, |
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692 MetadataType metadata, |
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693 const std::string& value) |
2188 | 694 { |
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695 content.AddMetadata(instance, metadata, value); |
2188 | 696 instanceMetadata[metadata] = value; |
697 } | |
698 | |
699 | |
3080
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700 void ServerIndex::SignalNewResource(ChangeType changeType, |
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701 ResourceType level, |
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702 const std::string& publicId, |
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703 int64_t internalId) |
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704 { |
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705 ServerIndexChange change(changeType, level, publicId); |
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|
706 db_.LogChange(internalId, change); |
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changeset
|
707 |
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started refactoring of ServerIndex::Store()
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changeset
|
708 assert(listener_.get() != NULL); |
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started refactoring of ServerIndex::Store()
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|
709 listener_->SignalChange(change); |
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|
710 } |
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started refactoring of ServerIndex::Store()
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diff
changeset
|
711 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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changeset
|
712 |
1006
649d47854314
proper handling of metadata in Store
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parents:
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diff
changeset
|
713 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 714 DicomInstanceToStore& instanceToStore, |
715 const Attachments& attachments) | |
0 | 716 { |
206
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717 boost::mutex::scoped_lock lock(mutex_); |
0 | 718 |
1822 | 719 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
720 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
721 | |
3090
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722 int64_t expectedInstances; |
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starting optimization of SeriesIndex::GetSeriesStatus()
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|
723 const bool hasExpectedInstances = |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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diff
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|
724 ComputeExpectedNumberOfInstances(expectedInstances, dicomSummary); |
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starting optimization of SeriesIndex::GetSeriesStatus()
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|
725 |
1006
649d47854314
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diff
changeset
|
726 instanceMetadata.clear(); |
649d47854314
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diff
changeset
|
727 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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|
728 const std::string hashPatient = instanceToStore.GetHasher().HashPatient(); |
1a75595d8e44
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diff
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|
729 const std::string hashStudy = instanceToStore.GetHasher().HashStudy(); |
1a75595d8e44
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diff
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|
730 const std::string hashSeries = instanceToStore.GetHasher().HashSeries(); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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|
731 const std::string hashInstance = instanceToStore.GetHasher().HashInstance(); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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732 |
0 | 733 try |
734 { | |
278
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diff
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|
735 Transaction t(*this); |
0 | 736 |
3080
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|
737 IDatabaseWrapper::CreateInstanceResult status; |
1a75595d8e44
started refactoring of ServerIndex::Store()
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|
738 int64_t instanceId; |
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diff
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|
739 |
2825
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
changeset
|
740 // Check whether this instance is already stored |
3080
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started refactoring of ServerIndex::Store()
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diff
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741 if (!db_.CreateInstance(status, instanceId, hashPatient, |
3082
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|
742 hashStudy, hashSeries, hashInstance)) |
0 | 743 { |
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744 // The instance already exists |
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diff
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|
745 |
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|
746 if (overwrite_) |
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new extension for database plugin SDK: createInstance
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747 { |
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748 // Overwrite the old instance |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
749 LOG(INFO) << "Overwriting instance: " << hashInstance; |
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diff
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|
750 db_.DeleteResource(instanceId); |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
751 |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
752 // Re-create the instance, now that the old one is removed |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
753 if (!db_.CreateInstance(status, instanceId, hashPatient, |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
754 hashStudy, hashSeries, hashInstance)) |
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new extension for database plugin SDK: createInstance
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diff
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|
755 { |
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new extension for database plugin SDK: createInstance
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|
756 throw OrthancException(ErrorCode_InternalError); |
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diff
changeset
|
757 } |
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new extension for database plugin SDK: createInstance
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diff
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|
758 } |
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new extension for database plugin SDK: createInstance
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parents:
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diff
changeset
|
759 else |
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new extension for database plugin SDK: createInstance
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
760 { |
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new extension for database plugin SDK: createInstance
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diff
changeset
|
761 // Do nothing if the instance already exists and overwriting is disabled |
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new extension for database plugin SDK: createInstance
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parents:
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diff
changeset
|
762 db_.GetAllMetadata(instanceMetadata, instanceId); |
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diff
changeset
|
763 return StoreStatus_AlreadyStored; |
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diff
changeset
|
764 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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|
765 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
766 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
767 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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diff
changeset
|
768 // Warn about the creation of new resources. The order must be |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
769 // from instance to patient. |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
770 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
771 // NB: In theory, could be sped up by grouping the underlying |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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parents:
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diff
changeset
|
772 // calls to "db_.LogChange()". However, this would only have an |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
773 // impact when new patient/study/series get created, which |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
774 // occurs far less often that creating new instances. The |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
775 // positive impact looks marginal in practice. |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
776 SignalNewResource(ChangeType_NewInstance, ResourceType_Instance, hashInstance, instanceId); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
777 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
778 if (status.isNewSeries_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
779 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
780 SignalNewResource(ChangeType_NewSeries, ResourceType_Series, hashSeries, status.seriesId_); |
0 | 781 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
782 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
783 if (status.isNewStudy_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
784 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
785 SignalNewResource(ChangeType_NewStudy, ResourceType_Study, hashStudy, status.studyId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
3075
diff
changeset
|
786 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
787 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
788 if (status.isNewPatient_) |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
789 { |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
790 SignalNewResource(ChangeType_NewPatient, ResourceType_Patient, hashPatient, status.patientId_); |
1a75595d8e44
started refactoring of ServerIndex::Store()
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parents:
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diff
changeset
|
791 } |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
792 |
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
793 |
268
4bc02e2254ec
preparing ServerIndex for recycling
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264
diff
changeset
|
794 // Ensure there is enough room in the storage for the new instance |
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diff
changeset
|
795 uint64_t instanceSize = 0; |
4bc02e2254ec
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diff
changeset
|
796 for (Attachments::const_iterator it = attachments.begin(); |
656 | 797 it != attachments.end(); ++it) |
268
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preparing ServerIndex for recycling
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diff
changeset
|
798 { |
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diff
changeset
|
799 instanceSize += it->GetCompressedSize(); |
4bc02e2254ec
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diff
changeset
|
800 } |
4bc02e2254ec
preparing ServerIndex for recycling
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diff
changeset
|
801 |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
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diff
changeset
|
802 Recycle(instanceSize, hashPatient /* don't consider the current patient for recycling */); |
3086
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
803 |
74e3e48aa9bd
grouping the setting of metadata
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diff
changeset
|
804 |
74e3e48aa9bd
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diff
changeset
|
805 // Attach the files to the newly created instance |
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diff
changeset
|
806 for (Attachments::const_iterator it = attachments.begin(); |
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parents:
3083
diff
changeset
|
807 it != attachments.end(); ++it) |
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parents:
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diff
changeset
|
808 { |
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parents:
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diff
changeset
|
809 db_.AddAttachment(instanceId, *it); |
74e3e48aa9bd
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parents:
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diff
changeset
|
810 } |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
811 |
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
812 |
0 | 813 { |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
814 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
815 |
3086
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changeset
|
816 // Populate the tags of the newly-created resources |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
817 |
3083
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
818 content.AddResource(instanceId, ResourceType_Instance, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
819 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
820 if (status.isNewSeries_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
821 { |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
822 content.AddResource(status.seriesId_, ResourceType_Series, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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|
823 } |
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IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
824 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
825 if (status.isNewStudy_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
826 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
827 content.AddResource(status.studyId_, ResourceType_Study, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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diff
changeset
|
828 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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parents:
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diff
changeset
|
829 |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
830 if (status.isNewPatient_) |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
831 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
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|
832 content.AddResource(status.patientId_, ResourceType_Patient, dicomSummary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
833 } |
683d572424b6
IDatabaseWrapper::SetResourcesContent
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parents:
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diff
changeset
|
834 |
3086
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diff
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|
835 |
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parents:
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diff
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|
836 // Attach the user-specified metadata |
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diff
changeset
|
837 |
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diff
changeset
|
838 for (MetadataMap::const_iterator |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
839 it = metadata.begin(); it != metadata.end(); ++it) |
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grouping the setting of metadata
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parents:
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|
840 { |
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grouping the setting of metadata
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parents:
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diff
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|
841 switch (it->first.first) |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
842 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
843 case ResourceType_Patient: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
844 content.AddMetadata(status.patientId_, it->first.second, it->second); |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
845 break; |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
846 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
847 case ResourceType_Study: |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
848 content.AddMetadata(status.studyId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
849 break; |
74e3e48aa9bd
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parents:
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diff
changeset
|
850 |
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parents:
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diff
changeset
|
851 case ResourceType_Series: |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
852 content.AddMetadata(status.seriesId_, it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
853 break; |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
854 |
74e3e48aa9bd
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parents:
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diff
changeset
|
855 case ResourceType_Instance: |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
856 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
857 it->first.second, it->second); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
858 break; |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
859 |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
860 default: |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
861 throw OrthancException(ErrorCode_ParameterOutOfRange); |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
862 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
863 } |
74e3e48aa9bd
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
864 |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
865 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
866 // Attach the auto-computed metadata for the patient/study/series levels |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
867 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
868 content.AddMetadata(status.seriesId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
869 content.AddMetadata(status.studyId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
870 content.AddMetadata(status.patientId_, MetadataType_LastUpdate, now); |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
871 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
872 if (status.isNewSeries_ && |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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parents:
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diff
changeset
|
873 hasExpectedInstances) |
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starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
874 { |
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starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
875 content.AddMetadata(status.seriesId_, MetadataType_Series_ExpectedNumberOfInstances, |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
876 boost::lexical_cast<std::string>(expectedInstances)); |
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starting optimization of SeriesIndex::GetSeriesStatus()
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parents:
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diff
changeset
|
877 } |
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starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
878 |
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
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parents:
3087
diff
changeset
|
879 |
3086
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grouping the setting of metadata
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parents:
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diff
changeset
|
880 // Attach the auto-computed metadata for the instance level, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
881 // reflecting these additions into the input metadata map |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
882 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
883 MetadataType_Instance_ReceptionDate, now); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
884 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_RemoteAet, |
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grouping the setting of metadata
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parents:
3083
diff
changeset
|
885 instanceToStore.GetOrigin().GetRemoteAetC()); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
886 SetInstanceMetadata(content, instanceMetadata, instanceId, MetadataType_Instance_Origin, |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
887 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
888 |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
889 |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
890 { |
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grouping the setting of metadata
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parents:
3083
diff
changeset
|
891 std::string s; |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
892 |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
893 if (instanceToStore.LookupTransferSyntax(s)) |
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grouping the setting of metadata
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parents:
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diff
changeset
|
894 { |
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grouping the setting of metadata
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parents:
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diff
changeset
|
895 // New in Orthanc 1.2.0 |
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parents:
3083
diff
changeset
|
896 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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parents:
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diff
changeset
|
897 MetadataType_Instance_TransferSyntax, s); |
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parents:
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diff
changeset
|
898 } |
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grouping the setting of metadata
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parents:
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diff
changeset
|
899 |
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parents:
3083
diff
changeset
|
900 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
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grouping the setting of metadata
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parents:
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diff
changeset
|
901 { |
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parents:
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diff
changeset
|
902 // New in Orthanc 1.4.0 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
903 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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grouping the setting of metadata
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parents:
3083
diff
changeset
|
904 MetadataType_Instance_RemoteIp, s); |
74e3e48aa9bd
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parents:
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diff
changeset
|
905 } |
74e3e48aa9bd
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parents:
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diff
changeset
|
906 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
907 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
908 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
909 // New in Orthanc 1.4.0 |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
910 SetInstanceMetadata(content, instanceMetadata, instanceId, |
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grouping the setting of metadata
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parents:
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diff
changeset
|
911 MetadataType_Instance_CalledAet, s); |
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grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
912 } |
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
913 |
74e3e48aa9bd
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parents:
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diff
changeset
|
914 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
915 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
916 // New in Orthanc 1.4.0 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
917 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
918 MetadataType_Instance_HttpUsername, s); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
919 } |
74e3e48aa9bd
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parents:
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diff
changeset
|
920 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
921 |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
922 |
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parents:
3083
diff
changeset
|
923 const DicomValue* value; |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
924 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
925 !value->IsNull() && |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
926 !value->IsBinary()) |
74e3e48aa9bd
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parents:
3083
diff
changeset
|
927 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
928 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
929 MetadataType_Instance_SopClassUid, value->GetContent()); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
930 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
931 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
932 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
933 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
934 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
935 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
936 if (!value->IsNull() && |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
937 !value->IsBinary()) |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
938 { |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
939 SetInstanceMetadata(content, instanceMetadata, instanceId, |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
940 MetadataType_Instance_IndexInSeries, value->GetContent()); |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
941 } |
74e3e48aa9bd
grouping the setting of metadata
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parents:
3083
diff
changeset
|
942 } |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
943 |
74e3e48aa9bd
grouping the setting of metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3083
diff
changeset
|
944 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
945 db_.SetResourcesContent(content); |
3080
1a75595d8e44
started refactoring of ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3075
diff
changeset
|
946 } |
3086
74e3e48aa9bd
grouping the setting of metadata
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parents:
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diff
changeset
|
947 |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
948 |
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|
949 // Check whether the series of this new instance is now completed |
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950 SeriesStatus seriesStatus = GetSeriesStatus(status.seriesId_); |
205
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951 if (seriesStatus == SeriesStatus_Complete) |
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952 { |
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953 LogChange(status.seriesId_, ChangeType_CompletedSeries, ResourceType_Series, hashSeries); |
205
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954 } |
3087 | 955 |
205
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956 |
511
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957 // Mark the parent resources of this instance as unstable |
3080
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958 MarkAsUnstable(status.seriesId_, ResourceType_Series, hashSeries); |
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|
959 MarkAsUnstable(status.studyId_, ResourceType_Study, hashStudy); |
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960 MarkAsUnstable(status.patientId_, ResourceType_Patient, hashPatient); |
511
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961 |
278
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962 t.Commit(instanceSize); |
268
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963 |
0 | 964 return StoreStatus_Success; |
965 } | |
62 | 966 catch (OrthancException& e) |
0 | 967 { |
1247 | 968 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 969 } |
970 | |
971 return StoreStatus_Failure; | |
972 } | |
973 | |
974 | |
238 | 975 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 976 { |
206
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977 boost::mutex::scoped_lock lock(mutex_); |
238 | 978 target = Json::objectValue; |
0 | 979 |
3020
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diff
changeset
|
980 uint64_t cs = db_.GetTotalCompressedSize(); |
1247 | 981 uint64_t us = db_.GetTotalUncompressedSize(); |
440
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982 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 983 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
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984 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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985 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 986 |
1247 | 987 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
988 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
989 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
990 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 991 } |
992 | |
187
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993 |
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|
994 |
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|
995 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id, |
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996 int64_t expectedNumberOfInstances) |
199 | 997 { |
3091
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IDatabaseWrapper::GetChildrenMetadata()
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998 std::list<std::string> values; |
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IDatabaseWrapper::GetChildrenMetadata()
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999 db_.GetChildrenMetadata(values, id, MetadataType_Instance_IndexInSeries); |
199 | 1000 |
1238 | 1001 std::set<int64_t> instances; |
3091
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IDatabaseWrapper::GetChildrenMetadata()
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|
1002 |
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IDatabaseWrapper::GetChildrenMetadata()
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changeset
|
1003 for (std::list<std::string>::const_iterator |
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IDatabaseWrapper::GetChildrenMetadata()
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1004 it = values.begin(); it != values.end(); ++it) |
199 | 1005 { |
1238 | 1006 int64_t index; |
3091
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changeset
|
1007 |
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IDatabaseWrapper::GetChildrenMetadata()
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changeset
|
1008 try |
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changeset
|
1009 { |
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IDatabaseWrapper::GetChildrenMetadata()
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changeset
|
1010 index = boost::lexical_cast<int64_t>(*it); |
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|
1011 } |
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|
1012 catch (boost::bad_lexical_cast&) |
199 | 1013 { |
1014 return SeriesStatus_Unknown; | |
1015 } | |
3091
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diff
changeset
|
1016 |
3090
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|
1017 if (!(index > 0 && index <= expectedNumberOfInstances)) |
199 | 1018 { |
1019 // Out-of-range instance index | |
1020 return SeriesStatus_Inconsistent; | |
1021 } | |
1022 | |
1023 if (instances.find(index) != instances.end()) | |
1024 { | |
1025 // Twice the same instance index | |
1026 return SeriesStatus_Inconsistent; | |
1027 } | |
1028 | |
1029 instances.insert(index); | |
1030 } | |
1031 | |
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|
1032 if (static_cast<int64_t>(instances.size()) == expectedNumberOfInstances) |
199 | 1033 { |
1034 return SeriesStatus_Complete; | |
1035 } | |
1036 else | |
1037 { | |
1038 return SeriesStatus_Missing; | |
1039 } | |
1040 } | |
1041 | |
1042 | |
3090
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changeset
|
1043 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
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1044 { |
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changeset
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1045 // Get the expected number of instances in this series (from the metadata) |
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changeset
|
1046 int64_t expected; |
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changeset
|
1047 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) |
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|
1048 { |
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1049 return SeriesStatus_Unknown; |
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|
1050 } |
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|
1051 else |
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1052 { |
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|
1053 return GetSeriesStatus(id, expected); |
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|
1054 } |
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|
1055 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1056 |
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diff
changeset
|
1057 |
202 | 1058 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
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reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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1555
diff
changeset
|
1059 int64_t resourceId, |
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|
1060 ResourceType resourceType) |
198
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1061 { |
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1062 DicomMap tags; |
1247 | 1063 db_.GetMainDicomTags(tags, resourceId); |
1676
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diff
changeset
|
1064 |
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diff
changeset
|
1065 if (resourceType == ResourceType_Study) |
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changeset
|
1066 { |
f079f3efe33b
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diff
changeset
|
1067 DicomMap t1, t2; |
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diff
changeset
|
1068 tags.ExtractStudyInformation(t1); |
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diff
changeset
|
1069 tags.ExtractPatientInformation(t2); |
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diff
changeset
|
1070 |
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diff
changeset
|
1071 target["MainDicomTags"] = Json::objectValue; |
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changeset
|
1072 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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changeset
|
1073 |
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changeset
|
1074 target["PatientMainDicomTags"] = Json::objectValue; |
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diff
changeset
|
1075 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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changeset
|
1076 } |
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diff
changeset
|
1077 else |
f079f3efe33b
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diff
changeset
|
1078 { |
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diff
changeset
|
1079 target["MainDicomTags"] = Json::objectValue; |
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changeset
|
1080 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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1081 } |
198
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1082 } |
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1083 |
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1084 |
198
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1085 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 1086 const std::string& publicId, |
1087 ResourceType expectedType) | |
198
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1088 { |
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1089 result = Json::objectValue; |
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1090 |
206
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1091 boost::mutex::scoped_lock lock(mutex_); |
199 | 1092 |
198
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1093 // Lookup for the requested resource |
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1094 int64_t id; |
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|
1095 ResourceType type; |
1294 | 1096 if (!db_.LookupResource(id, type, publicId) || |
199 | 1097 type != expectedType) |
198
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1098 { |
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1099 return false; |
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1100 } |
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1101 |
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1102 // Find the parent resource (if it exists) |
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1103 if (type != ResourceType_Patient) |
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1104 { |
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1105 int64_t parentId; |
1247 | 1106 if (!db_.LookupParent(parentId, id)) |
198
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1107 { |
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1108 throw OrthancException(ErrorCode_InternalError); |
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1109 } |
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1110 |
1247 | 1111 std::string parent = db_.GetPublicId(parentId); |
198
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1112 |
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1113 switch (type) |
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1114 { |
269
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1115 case ResourceType_Study: |
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diff
changeset
|
1116 result["ParentPatient"] = parent; |
f6fdf5abe751
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268
diff
changeset
|
1117 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
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diff
changeset
|
1118 |
269
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diff
changeset
|
1119 case ResourceType_Series: |
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diff
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|
1120 result["ParentStudy"] = parent; |
f6fdf5abe751
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diff
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|
1121 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
1122 |
269
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268
diff
changeset
|
1123 case ResourceType_Instance: |
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diff
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|
1124 result["ParentSeries"] = parent; |
f6fdf5abe751
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268
diff
changeset
|
1125 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
changeset
|
1126 |
269
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diff
changeset
|
1127 default: |
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|
1128 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1129 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1130 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1131 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
1132 // List the children resources |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1133 std::list<std::string> children; |
1247 | 1134 db_.GetChildrenPublicId(children, id); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1135 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1136 if (type != ResourceType_Instance) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1137 { |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1138 Json::Value c = Json::arrayValue; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1139 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1140 for (std::list<std::string>::const_iterator |
656 | 1141 it = children.begin(); it != children.end(); ++it) |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1142 { |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1143 c.append(*it); |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1144 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1145 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1146 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1147 { |
269
f6fdf5abe751
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268
diff
changeset
|
1148 case ResourceType_Patient: |
f6fdf5abe751
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268
diff
changeset
|
1149 result["Studies"] = c; |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1150 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1151 |
269
f6fdf5abe751
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parents:
268
diff
changeset
|
1152 case ResourceType_Study: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1153 result["Series"] = c; |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1154 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1155 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1156 case ResourceType_Series: |
f6fdf5abe751
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parents:
268
diff
changeset
|
1157 result["Instances"] = c; |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1158 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1159 |
269
f6fdf5abe751
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parents:
268
diff
changeset
|
1160 default: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1161 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1162 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1163 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1164 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1165 // Set the resource type |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1166 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1167 { |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1168 case ResourceType_Patient: |
f6fdf5abe751
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parents:
268
diff
changeset
|
1169 result["Type"] = "Patient"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1170 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1171 |
269
f6fdf5abe751
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parents:
268
diff
changeset
|
1172 case ResourceType_Study: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1173 result["Type"] = "Study"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1174 break; |
199 | 1175 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1176 case ResourceType_Series: |
f6fdf5abe751
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parents:
268
diff
changeset
|
1177 { |
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268
diff
changeset
|
1178 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
1179 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1180 |
1238 | 1181 int64_t i; |
1237 | 1182 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1183 { |
1238 | 1184 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1185 } |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1186 else |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1187 { |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1188 result["ExpectedNumberOfInstances"] = Json::nullValue; |
3090
31244604f617
starting optimization of SeriesIndex::GetSeriesStatus()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3087
diff
changeset
|
1189 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1190 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1191 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1192 } |
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1193 |
269
f6fdf5abe751
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parents:
268
diff
changeset
|
1194 case ResourceType_Instance: |
f6fdf5abe751
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parents:
268
diff
changeset
|
1195 { |
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268
diff
changeset
|
1196 result["Type"] = "Instance"; |
f6fdf5abe751
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268
diff
changeset
|
1197 |
f6fdf5abe751
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268
diff
changeset
|
1198 FileInfo attachment; |
1247 | 1199 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1200 { |
f6fdf5abe751
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parents:
268
diff
changeset
|
1201 throw OrthancException(ErrorCode_InternalError); |
f6fdf5abe751
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parents:
268
diff
changeset
|
1202 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1203 |
269
f6fdf5abe751
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268
diff
changeset
|
1204 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
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parents:
268
diff
changeset
|
1205 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1206 |
1238 | 1207 int64_t i; |
1237 | 1208 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1209 { |
1238 | 1210 result["IndexInSeries"] = static_cast<int>(i); |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1211 } |
269
f6fdf5abe751
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268
diff
changeset
|
1212 else |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1213 { |
269
f6fdf5abe751
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parents:
268
diff
changeset
|
1214 result["IndexInSeries"] = Json::nullValue; |
3091
476cba12c2b0
IDatabaseWrapper::GetChildrenMetadata()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3090
diff
changeset
|
1215 } |
198
663cc6c46d0a
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197
diff
changeset
|
1216 |
269
f6fdf5abe751
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268
diff
changeset
|
1217 break; |
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268
diff
changeset
|
1218 } |
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268
diff
changeset
|
1219 |
f6fdf5abe751
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268
diff
changeset
|
1220 default: |
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268
diff
changeset
|
1221 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1222 } |
663cc6c46d0a
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diff
changeset
|
1223 |
663cc6c46d0a
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diff
changeset
|
1224 // Record the remaining information |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1225 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1226 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1227 |
315 | 1228 std::string tmp; |
1229 | |
1247 | 1230 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1231 { |
315 | 1232 result["AnonymizedFrom"] = tmp; |
1236 | 1233 } |
315 | 1234 |
1247 | 1235 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1236 { |
315 | 1237 result["ModifiedFrom"] = tmp; |
1236 | 1238 } |
315 | 1239 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1240 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1241 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1242 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1243 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1244 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1245 |
1247 | 1246 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1247 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1248 result["LastUpdate"] = tmp; |
1236 | 1249 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1250 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1251 |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1252 return true; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
changeset
|
1253 } |
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1254 |
0 | 1255 |
232
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1256 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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1257 const std::string& instanceUuid, |
233 | 1258 FileContentType contentType) |
0 | 1259 { |
206
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1260 boost::mutex::scoped_lock lock(mutex_); |
0 | 1261 |
193
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1262 int64_t id; |
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1263 ResourceType type; |
1294 | 1264 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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1265 { |
1113
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1266 throw OrthancException(ErrorCode_UnknownResource); |
192
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1267 } |
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1268 |
1247 | 1269 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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1270 { |
233 | 1271 assert(attachment.GetContentType() == contentType); |
232
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1272 return true; |
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1273 } |
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1274 else |
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1275 { |
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1276 return false; |
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1277 } |
192
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1278 } |
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1279 |
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1280 |
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1281 |
1354 | 1282 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1283 ResourceType resourceType) |
0 | 1284 { |
1357 | 1285 boost::mutex::scoped_lock lock(mutex_); |
1286 db_.GetAllPublicIds(target, resourceType); | |
0 | 1287 } |
1288 | |
1289 | |
1509
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1290 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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1291 ResourceType resourceType, |
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1292 size_t since, |
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1293 size_t limit) |
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1294 { |
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1295 if (limit == 0) |
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1296 { |
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1297 target.clear(); |
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1298 return; |
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1299 } |
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1300 |
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1301 boost::mutex::scoped_lock lock(mutex_); |
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1302 db_.GetAllPublicIds(target, resourceType, since, limit); |
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1303 } |
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1304 |
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1305 |
1244 | 1306 template <typename T> |
1307 static void FormatLog(Json::Value& target, | |
1308 const std::list<T>& log, | |
1309 const std::string& name, | |
1310 bool done, | |
1311 int64_t since) | |
1240 | 1312 { |
1313 Json::Value items = Json::arrayValue; | |
1244 | 1314 for (typename std::list<T>::const_iterator |
1304 | 1315 it = log.begin(); it != log.end(); ++it) |
1240 | 1316 { |
1317 Json::Value item; | |
1318 it->Format(item); | |
1319 items.append(item); | |
1320 } | |
1321 | |
1322 target = Json::objectValue; | |
1244 | 1323 target[name] = items; |
1240 | 1324 target["Done"] = done; |
1325 | |
1305 | 1326 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1327 target["Last"] = static_cast<int>(last); |
1328 } | |
1329 | |
1330 | |
1247 | 1331 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1332 int64_t since, |
0 | 1333 unsigned int maxResults) |
1334 { | |
1240 | 1335 std::list<ServerIndexChange> changes; |
1336 bool done; | |
1337 | |
1338 { | |
1339 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1340 |
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1341 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1342 // "GetLastChange()" involves calls to "GetPublicId()" |
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1343 Transaction transaction(*this); |
1247 | 1344 db_.GetChanges(changes, done, since, maxResults); |
2717
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1345 transaction.Commit(0); |
1240 | 1346 } |
1347 | |
1244 | 1348 FormatLog(target, changes, "Changes", done, since); |
237
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1349 } |
0 | 1350 |
1240 | 1351 |
1247 | 1352 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1353 { |
1240 | 1354 std::list<ServerIndexChange> changes; |
1355 | |
1356 { | |
1357 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1358 |
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1359 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1360 // "GetLastChange()" involves calls to "GetPublicId()" |
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1361 Transaction transaction(*this); |
1247 | 1362 db_.GetLastChange(changes); |
2717
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1363 transaction.Commit(0); |
1240 | 1364 } |
1365 | |
1244 | 1366 FormatLog(target, changes, "Changes", true, 0); |
0 | 1367 } |
231 | 1368 |
1240 | 1369 |
231 | 1370 void ServerIndex::LogExportedResource(const std::string& publicId, |
1371 const std::string& remoteModality) | |
1372 { | |
1373 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1374 Transaction transaction(*this); |
231 | 1375 |
1376 int64_t id; | |
1377 ResourceType type; | |
1294 | 1378 if (!db_.LookupResource(id, type, publicId)) |
231 | 1379 { |
2573
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1380 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1381 } |
1382 | |
1383 std::string patientId; | |
1384 std::string studyInstanceUid; | |
1385 std::string seriesInstanceUid; | |
1386 std::string sopInstanceUid; | |
1387 | |
1388 int64_t currentId = id; | |
1389 ResourceType currentType = type; | |
1390 | |
1391 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1392 bool done = false; | |
1393 while (!done) | |
1394 { | |
1395 DicomMap map; | |
1247 | 1396 db_.GetMainDicomTags(map, currentId); |
231 | 1397 |
1398 switch (currentType) | |
1399 { | |
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1400 case ResourceType_Patient: |
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1401 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1402 { |
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1403 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1404 } |
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1405 done = true; |
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1406 break; |
231 | 1407 |
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1408 case ResourceType_Study: |
2090
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1409 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1410 { |
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1411 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1412 } |
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1413 currentType = ResourceType_Patient; |
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1414 break; |
231 | 1415 |
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1416 case ResourceType_Series: |
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1417 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1418 { |
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1419 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1420 } |
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1421 currentType = ResourceType_Study; |
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1422 break; |
231 | 1423 |
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1424 case ResourceType_Instance: |
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1425 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1426 { |
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1427 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1428 } |
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1429 currentType = ResourceType_Series; |
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1430 break; |
231 | 1431 |
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1432 default: |
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1433 throw OrthancException(ErrorCode_InternalError); |
231 | 1434 } |
1435 | |
1436 // If we have not reached the Patient level, find the parent of | |
1437 // the current resource | |
1438 if (!done) | |
1439 { | |
1247 | 1440 bool ok = db_.LookupParent(currentId, currentId); |
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1441 assert(ok); |
231 | 1442 } |
1443 } | |
1444 | |
1246 | 1445 ExportedResource resource(-1, |
1446 type, | |
1447 publicId, | |
1448 remoteModality, | |
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1449 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1450 patientId, |
1451 studyInstanceUid, | |
1452 seriesInstanceUid, | |
1453 sopInstanceUid); | |
1310
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1454 |
1247 | 1455 db_.LogExportedResource(resource); |
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1456 transaction.Commit(0); |
231 | 1457 } |
1458 | |
1459 | |
1247 | 1460 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1461 int64_t since, |
1462 unsigned int maxResults) | |
1463 { | |
1244 | 1464 std::list<ExportedResource> exported; |
1465 bool done; | |
1466 | |
1467 { | |
1468 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1469 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1470 } |
1471 | |
1472 FormatLog(target, exported, "Exports", done, since); | |
231 | 1473 } |
237
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1474 |
1244 | 1475 |
1247 | 1476 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1477 { |
1244 | 1478 std::list<ExportedResource> exported; |
1479 | |
1480 { | |
1481 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1482 db_.GetLastExportedResource(exported); |
1244 | 1483 } |
1484 | |
1485 FormatLog(target, exported, "Exports", true, 0); | |
237
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1486 } |
268
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1487 |
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1488 |
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1489 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1490 { |
269
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1491 if (maximumStorageSize_ != 0) |
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1492 { |
3020
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1493 assert(maximumStorageSize_ >= instanceSize); |
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1494 |
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1495 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
269
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1496 { |
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1497 return true; |
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1498 } |
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1499 } |
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1500 |
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1501 if (maximumPatients_ != 0) |
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1502 { |
1247 | 1503 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1504 if (patientCount > maximumPatients_) |
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1505 { |
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1506 return true; |
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1507 } |
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1508 } |
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1509 |
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1510 return false; |
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1511 } |
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1512 |
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1513 |
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1514 void ServerIndex::Recycle(uint64_t instanceSize, |
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1515 const std::string& newPatientId) |
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1516 { |
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1517 if (!IsRecyclingNeeded(instanceSize)) |
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1518 { |
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1519 return; |
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1520 } |
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1521 |
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1522 // Check whether other DICOM instances from this patient are |
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1523 // already stored |
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1524 int64_t patientToAvoid; |
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1525 ResourceType type; |
1294 | 1526 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1527 |
269
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1528 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1529 { |
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1530 throw OrthancException(ErrorCode_InternalError); |
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1531 } |
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1532 |
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1533 // Iteratively select patient to remove until there is enough |
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1534 // space in the DICOM store |
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1535 int64_t patientToRecycle; |
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1536 while (true) |
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1537 { |
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1538 // If other instances of this patient are already in the store, |
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1539 // we must avoid to recycle them |
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1540 bool ok = hasPatientToAvoid ? |
1247 | 1541 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1542 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1543 |
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1544 if (!ok) |
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1545 { |
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1546 throw OrthancException(ErrorCode_FullStorage); |
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1547 } |
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1548 |
1331
77e129ba64e4
Prevent freeze on C-FIND if no DICOM tag is to be returned
Sebastien Jodogne <s.jodogne@gmail.com>
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1310
diff
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|
1549 VLOG(1) << "Recycling one patient"; |
1247 | 1550 db_.DeleteResource(patientToRecycle); |
269
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1551 |
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1552 if (!IsRecyclingNeeded(instanceSize)) |
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|
1553 { |
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1554 // OK, we're done |
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|
1555 break; |
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1556 } |
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|
1557 } |
268
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1558 } |
269
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|
1559 |
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1560 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1561 { |
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1562 boost::mutex::scoped_lock lock(mutex_); |
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1563 maximumPatients_ = count; |
270
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1564 |
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1565 if (count == 0) |
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|
1566 { |
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1567 LOG(WARNING) << "No limit on the number of stored patients"; |
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1568 } |
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|
1569 else |
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|
1570 { |
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1571 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1572 } |
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|
1573 |
269
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|
1574 StandaloneRecycling(); |
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1575 } |
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|
1576 |
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1577 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1578 { |
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1579 boost::mutex::scoped_lock lock(mutex_); |
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1580 maximumStorageSize_ = size; |
270
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1581 |
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1582 if (size == 0) |
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|
1583 { |
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1584 LOG(WARNING) << "No limit on the size of the storage area"; |
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1585 } |
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|
1586 else |
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|
1587 { |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
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diff
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|
1588 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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|
1589 } |
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|
1590 |
269
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|
1591 StandaloneRecycling(); |
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1592 } |
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1593 |
2825
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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2726
diff
changeset
|
1594 void ServerIndex::SetOverwriteInstances(bool overwrite) |
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
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|
1595 { |
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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2726
diff
changeset
|
1596 boost::mutex::scoped_lock lock(mutex_); |
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
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|
1597 overwrite_ = overwrite; |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
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|
1598 } |
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
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|
1599 |
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
1600 |
272
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|
1601 void ServerIndex::StandaloneRecycling() |
269
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1602 { |
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1603 // WARNING: No mutex here, do not include this as a public method |
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|
1604 Transaction t(*this); |
269
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|
1605 Recycle(0, ""); |
278
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|
1606 t.Commit(0); |
269
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1607 } |
272
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|
1608 |
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|
1609 |
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1610 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1611 { |
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|
1612 boost::mutex::scoped_lock lock(mutex_); |
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1613 |
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1614 // Lookup for the requested resource |
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1615 int64_t id; |
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1616 ResourceType type; |
1294 | 1617 if (!db_.LookupResource(id, type, publicId) || |
272
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1618 type != ResourceType_Patient) |
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1619 { |
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1620 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1621 } |
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1622 |
1247 | 1623 return db_.IsProtectedPatient(id); |
272
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1624 } |
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1625 |
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1626 |
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1627 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1628 bool isProtected) |
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1629 { |
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1630 boost::mutex::scoped_lock lock(mutex_); |
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1631 Transaction transaction(*this); |
272
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1632 |
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1633 // Lookup for the requested resource |
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1634 int64_t id; |
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1635 ResourceType type; |
1294 | 1636 if (!db_.LookupResource(id, type, publicId) || |
272
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1637 type != ResourceType_Patient) |
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1638 { |
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1639 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1640 } |
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1641 |
1247 | 1642 db_.SetProtectedPatient(id, isProtected); |
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1643 transaction.Commit(0); |
272
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1644 |
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1645 if (isProtected) |
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1646 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1647 else |
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1648 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1649 } |
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1650 |
304 | 1651 |
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1652 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1653 const std::string& publicId) |
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1654 { |
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1655 result.clear(); |
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1656 |
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1657 boost::mutex::scoped_lock lock(mutex_); |
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1658 |
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1659 ResourceType type; |
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1660 int64_t resource; |
1294 | 1661 if (!db_.LookupResource(resource, type, publicId)) |
714
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1662 { |
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1663 throw OrthancException(ErrorCode_UnknownResource); |
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1664 } |
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1665 |
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1666 if (type == ResourceType_Instance) |
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1667 { |
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1668 // An instance cannot have a child |
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1669 throw OrthancException(ErrorCode_BadParameterType); |
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1670 } |
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1671 |
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1672 std::list<int64_t> tmp; |
1247 | 1673 db_.GetChildrenInternalId(tmp, resource); |
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1674 |
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1675 for (std::list<int64_t>::const_iterator |
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1676 it = tmp.begin(); it != tmp.end(); ++it) |
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1677 { |
1247 | 1678 result.push_back(db_.GetPublicId(*it)); |
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1679 } |
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1680 } |
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1681 |
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1682 |
304 | 1683 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1684 const std::string& publicId) | |
1685 { | |
1686 result.clear(); | |
1687 | |
1688 boost::mutex::scoped_lock lock(mutex_); | |
1689 | |
1690 ResourceType type; | |
1691 int64_t top; | |
1294 | 1692 if (!db_.LookupResource(top, type, publicId)) |
304 | 1693 { |
1694 throw OrthancException(ErrorCode_UnknownResource); | |
1695 } | |
1696 | |
1697 if (type == ResourceType_Instance) | |
1698 { | |
1699 // The resource is already an instance: Do not go down the hierarchy | |
1700 result.push_back(publicId); | |
1701 return; | |
1702 } | |
1703 | |
1704 std::stack<int64_t> toExplore; | |
1705 toExplore.push(top); | |
1706 | |
1707 std::list<int64_t> tmp; | |
1708 | |
1709 while (!toExplore.empty()) | |
1710 { | |
1711 // Get the internal ID of the current resource | |
1712 int64_t resource = toExplore.top(); | |
1713 toExplore.pop(); | |
1714 | |
1247 | 1715 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1716 { |
1247 | 1717 result.push_back(db_.GetPublicId(resource)); |
304 | 1718 } |
1719 else | |
1720 { | |
1721 // Tag all the children of this resource as to be explored | |
1247 | 1722 db_.GetChildrenInternalId(tmp, resource); |
304 | 1723 for (std::list<int64_t>::const_iterator |
656 | 1724 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1725 { |
1726 toExplore.push(*it); | |
1727 } | |
1728 } | |
1729 } | |
1730 } | |
1731 | |
306
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1732 |
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1733 void ServerIndex::SetMetadata(const std::string& publicId, |
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1734 MetadataType type, |
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1735 const std::string& value) |
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1736 { |
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1737 boost::mutex::scoped_lock lock(mutex_); |
1773
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1738 Transaction t(*this); |
306
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1739 |
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1740 ResourceType rtype; |
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1741 int64_t id; |
1294 | 1742 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1743 { |
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1744 throw OrthancException(ErrorCode_UnknownResource); |
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1745 } |
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1746 |
1247 | 1747 db_.SetMetadata(id, type, value); |
1773
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1748 |
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1749 if (IsUserMetadata(type)) |
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1750 { |
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1751 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1752 } |
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1753 |
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1754 t.Commit(0); |
306
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1755 } |
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1756 |
438 | 1757 |
1758 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1759 MetadataType type) | |
1760 { | |
1761 boost::mutex::scoped_lock lock(mutex_); | |
1773
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1762 Transaction t(*this); |
438 | 1763 |
1764 ResourceType rtype; | |
1765 int64_t id; | |
1294 | 1766 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1767 { |
1768 throw OrthancException(ErrorCode_UnknownResource); | |
1769 } | |
1770 | |
1247 | 1771 db_.DeleteMetadata(id, type); |
1773
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1772 |
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1773 if (IsUserMetadata(type)) |
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1774 { |
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1775 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1776 } |
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1777 |
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1778 t.Commit(0); |
438 | 1779 } |
1780 | |
1781 | |
306
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1782 bool ServerIndex::LookupMetadata(std::string& target, |
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1783 const std::string& publicId, |
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1784 MetadataType type) |
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1785 { |
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1786 boost::mutex::scoped_lock lock(mutex_); |
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1787 |
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1788 ResourceType rtype; |
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1789 int64_t id; |
1294 | 1790 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1791 { |
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1792 throw OrthancException(ErrorCode_UnknownResource); |
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1793 } |
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1794 |
1247 | 1795 return db_.LookupMetadata(target, id, type); |
306
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1796 } |
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1797 |
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1798 |
739 | 1799 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1800 const std::string& publicId) |
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1801 { |
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1802 boost::mutex::scoped_lock lock(mutex_); |
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1803 |
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1804 ResourceType rtype; |
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1805 int64_t id; |
1294 | 1806 if (!db_.LookupResource(id, rtype, publicId)) |
436
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1807 { |
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1808 throw OrthancException(ErrorCode_UnknownResource); |
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1809 } |
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1810 |
1247 | 1811 db_.ListAvailableMetadata(target, id); |
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1812 } |
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1813 |
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1814 |
697
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1815 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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1816 const std::string& publicId, |
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1817 ResourceType expectedType) |
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1818 { |
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1819 boost::mutex::scoped_lock lock(mutex_); |
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1820 |
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1821 ResourceType type; |
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1822 int64_t id; |
1294 | 1823 if (!db_.LookupResource(id, type, publicId) || |
697
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1824 expectedType != type) |
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1825 { |
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1826 throw OrthancException(ErrorCode_UnknownResource); |
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1827 } |
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1828 |
1247 | 1829 db_.ListAvailableAttachments(target, id); |
697
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1830 } |
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1831 |
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1832 |
306
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1833 bool ServerIndex::LookupParent(std::string& target, |
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1834 const std::string& publicId) |
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1835 { |
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1836 boost::mutex::scoped_lock lock(mutex_); |
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1837 |
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1838 ResourceType type; |
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1839 int64_t id; |
1294 | 1840 if (!db_.LookupResource(id, type, publicId)) |
306
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1841 { |
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1842 throw OrthancException(ErrorCode_UnknownResource); |
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1843 } |
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1844 |
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1845 int64_t parentId; |
1247 | 1846 if (db_.LookupParent(parentId, id)) |
306
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1847 { |
1247 | 1848 target = db_.GetPublicId(parentId); |
306
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1849 return true; |
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1850 } |
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1851 else |
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1852 { |
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1853 return false; |
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1854 } |
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1855 } |
310 | 1856 |
1857 | |
1858 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1859 { | |
1860 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1861 Transaction transaction(*this); |
311 | 1862 |
1237 | 1863 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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1864 transaction.Commit(0); |
311 | 1865 |
1866 return seq; | |
310 | 1867 } |
315 | 1868 |
1869 | |
1870 | |
1871 void ServerIndex::LogChange(ChangeType changeType, | |
1872 const std::string& publicId) | |
1873 { | |
1874 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1875 Transaction transaction(*this); |
315 | 1876 |
1877 int64_t id; | |
1878 ResourceType type; | |
1294 | 1879 if (!db_.LookupResource(id, type, publicId)) |
315 | 1880 { |
1881 throw OrthancException(ErrorCode_UnknownResource); | |
1882 } | |
1883 | |
1237 | 1884 LogChange(id, changeType, type, publicId); |
1310
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1885 transaction.Commit(0); |
315 | 1886 } |
413
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1887 |
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|
1888 |
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1889 void ServerIndex::DeleteChanges() |
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1890 { |
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|
1891 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1892 db_.ClearChanges(); |
413
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1893 } |
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1894 |
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1895 void ServerIndex::DeleteExportedResources() |
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1896 { |
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1897 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1898 db_.ClearExportedResources(); |
413
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1899 } |
440
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1900 |
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1901 |
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|
1902 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& diskSize, |
646 | 1903 /* out */ uint64_t& uncompressedSize, |
1904 /* out */ unsigned int& countStudies, | |
1905 /* out */ unsigned int& countSeries, | |
1906 /* out */ unsigned int& countInstances, | |
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1907 /* out */ uint64_t& dicomDiskSize, |
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1908 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1909 /* in */ int64_t id, |
1910 /* in */ ResourceType type) | |
440
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1911 { |
646 | 1912 std::stack<int64_t> toExplore; |
1913 toExplore.push(id); | |
440
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1914 |
646 | 1915 countInstances = 0; |
1916 countSeries = 0; | |
1917 countStudies = 0; | |
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1918 diskSize = 0; |
646 | 1919 uncompressedSize = 0; |
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1920 dicomDiskSize = 0; |
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1921 dicomUncompressedSize = 0; |
440
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1922 |
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1923 while (!toExplore.empty()) |
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1924 { |
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1925 // Get the internal ID of the current resource |
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1926 int64_t resource = toExplore.top(); |
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1927 toExplore.pop(); |
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1928 |
1247 | 1929 ResourceType thisType = db_.GetResourceType(resource); |
440
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1930 |
702
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1931 std::list<FileContentType> f; |
1247 | 1932 db_.ListAvailableAttachments(f, resource); |
702
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1933 |
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1934 for (std::list<FileContentType>::const_iterator |
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1935 it = f.begin(); it != f.end(); ++it) |
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1936 { |
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1937 FileInfo attachment; |
1247 | 1938 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1939 { |
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1940 if (attachment.GetContentType() == FileContentType_Dicom) |
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1941 { |
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1942 dicomDiskSize += attachment.GetCompressedSize(); |
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1943 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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1944 } |
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1945 |
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|
1946 diskSize += attachment.GetCompressedSize(); |
702
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1947 uncompressedSize += attachment.GetUncompressedSize(); |
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1948 } |
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1949 } |
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|
1950 |
440
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1951 if (thisType == ResourceType_Instance) |
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1952 { |
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1953 countInstances++; |
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1954 } |
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|
1955 else |
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1956 { |
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1957 switch (thisType) |
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1958 { |
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1959 case ResourceType_Study: |
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1960 countStudies++; |
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1961 break; |
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1962 |
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1963 case ResourceType_Series: |
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1964 countSeries++; |
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1965 break; |
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1966 |
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1967 default: |
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1968 break; |
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1969 } |
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1970 |
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1971 // Tag all the children of this resource as to be explored |
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1972 std::list<int64_t> tmp; |
1247 | 1973 db_.GetChildrenInternalId(tmp, resource); |
440
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1974 for (std::list<int64_t>::const_iterator |
656 | 1975 it = tmp.begin(); it != tmp.end(); ++it) |
440
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1976 { |
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1977 toExplore.push(*it); |
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1978 } |
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1979 } |
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1980 } |
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1981 |
646 | 1982 if (countStudies == 0) |
1983 { | |
1984 countStudies = 1; | |
1985 } | |
1986 | |
1987 if (countSeries == 0) | |
1988 { | |
1989 countSeries = 1; | |
1990 } | |
1991 } | |
1992 | |
1993 | |
1994 | |
1995 void ServerIndex::GetStatistics(Json::Value& target, | |
1996 const std::string& publicId) | |
1997 { | |
1998 boost::mutex::scoped_lock lock(mutex_); | |
1999 | |
2000 ResourceType type; | |
2001 int64_t top; | |
1294 | 2002 if (!db_.LookupResource(top, type, publicId)) |
646 | 2003 { |
2004 throw OrthancException(ErrorCode_UnknownResource); | |
2005 } | |
2006 | |
2007 uint64_t uncompressedSize; | |
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2008 uint64_t diskSize; |
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2009 uint64_t dicomUncompressedSize; |
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2010 uint64_t dicomDiskSize; |
646 | 2011 unsigned int countStudies; |
2012 unsigned int countSeries; | |
2013 unsigned int countInstances; | |
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2014 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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2015 countSeries, countInstances, dicomDiskSize, dicomUncompressedSize, top, type); |
646 | 2016 |
440
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2017 target = Json::objectValue; |
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2018 target["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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2019 target["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
440
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2020 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
1310
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|
2021 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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2022 |
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2023 target["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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2024 target["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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2025 target["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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|
2026 target["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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2027 |
440
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2028 switch (type) |
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2029 { |
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|
2030 // Do NOT add "break" below this point! |
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2031 case ResourceType_Patient: |
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2032 target["CountStudies"] = countStudies; |
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2033 |
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2034 case ResourceType_Study: |
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2035 target["CountSeries"] = countSeries; |
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2036 |
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2037 case ResourceType_Series: |
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2038 target["CountInstances"] = countInstances; |
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2039 |
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2040 case ResourceType_Instance: |
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2041 default: |
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2042 break; |
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|
2043 } |
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2044 } |
511
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|
2045 |
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|
2046 |
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|
2047 void ServerIndex::GetStatistics(/* out */ uint64_t& diskSize, |
646 | 2048 /* out */ uint64_t& uncompressedSize, |
2049 /* out */ unsigned int& countStudies, | |
2050 /* out */ unsigned int& countSeries, | |
2051 /* out */ unsigned int& countInstances, | |
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|
2052 /* out */ uint64_t& dicomDiskSize, |
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|
2053 /* out */ uint64_t& dicomUncompressedSize, |
646 | 2054 const std::string& publicId) |
2055 { | |
2056 boost::mutex::scoped_lock lock(mutex_); | |
2057 | |
2058 ResourceType type; | |
2059 int64_t top; | |
1294 | 2060 if (!db_.LookupResource(top, type, publicId)) |
646 | 2061 { |
2062 throw OrthancException(ErrorCode_UnknownResource); | |
2063 } | |
2064 | |
2987
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|
2065 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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|
2066 countSeries, countInstances, dicomDiskSize, |
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|
2067 dicomUncompressedSize, top, type); |
646 | 2068 } |
2069 | |
2070 | |
2665
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diff
changeset
|
2071 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
389d050a2e66
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|
2072 unsigned int threadSleep) |
511
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2073 { |
2940
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|
2074 int stableAge; |
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refactoring access to Orthanc configuration
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|
2075 |
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|
2076 { |
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|
2077 OrthancConfiguration::ReaderLock lock; |
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2078 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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|
2079 } |
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2080 |
511
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2081 if (stableAge <= 0) |
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2082 { |
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2083 stableAge = 60; |
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2084 } |
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2085 |
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|
2086 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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2087 |
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2088 while (!that->done_) |
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2089 { |
2665
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|
2090 // Check for stable resources each few seconds |
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|
2091 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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2092 |
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|
2093 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 2094 |
511
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2095 while (!that->unstableResources_.IsEmpty() && |
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2096 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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2097 { |
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2098 // This DICOM resource has not received any new instance for |
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2099 // some time. It can be considered as stable. |
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2100 |
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2101 UnstableResourcePayload payload; |
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2102 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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2103 |
513 | 2104 // Ensure that the resource is still existing before logging the change |
1247 | 2105 if (that->db_.IsExistingResource(id)) |
511
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2106 { |
1177
5b2d8c280ac2
Plugins can monitor changes through callbacks
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diff
changeset
|
2107 switch (payload.GetResourceType()) |
513 | 2108 { |
1177
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Plugins can monitor changes through callbacks
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diff
changeset
|
2109 case ResourceType_Patient: |
1237 | 2110 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 2111 break; |
511
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|
2112 |
1177
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Plugins can monitor changes through callbacks
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diff
changeset
|
2113 case ResourceType_Study: |
1237 | 2114 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 2115 break; |
511
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diff
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|
2116 |
1177
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diff
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|
2117 case ResourceType_Series: |
1237 | 2118 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 2119 break; |
2120 | |
2121 default: | |
2122 throw OrthancException(ErrorCode_InternalError); | |
2123 } | |
2124 | |
2125 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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diff
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|
2126 } |
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|
2127 } |
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|
2128 } |
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diff
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|
2129 |
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diff
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|
2130 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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|
2131 } |
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diff
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|
2132 |
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diff
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|
2133 |
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diff
changeset
|
2134 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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Plugins can monitor changes through callbacks
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|
2135 Orthanc::ResourceType type, |
5b2d8c280ac2
Plugins can monitor changes through callbacks
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1162
diff
changeset
|
2136 const std::string& publicId) |
511
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monitoring of stable patients/studies/series
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diff
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|
2137 { |
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diff
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|
2138 // WARNING: Before calling this method, "mutex_" must be locked. |
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|
2139 |
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changeset
|
2140 assert(type == Orthanc::ResourceType_Patient || |
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diff
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|
2141 type == Orthanc::ResourceType_Study || |
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diff
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|
2142 type == Orthanc::ResourceType_Series); |
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diff
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|
2143 |
1177
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Plugins can monitor changes through callbacks
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changeset
|
2144 UnstableResourcePayload payload(type, publicId); |
5b2d8c280ac2
Plugins can monitor changes through callbacks
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diff
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|
2145 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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diff
changeset
|
2146 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
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1177
diff
changeset
|
2147 |
1237 | 2148 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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diff
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|
2149 } |
521 | 2150 |
2151 | |
2152 | |
3034
54e422fe31ce
moving LookupResource to graveyard
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3033
diff
changeset
|
2153 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result, |
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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parents:
1727
diff
changeset
|
2154 ResourceType level, |
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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1727
diff
changeset
|
2155 const DicomTag& tag, |
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
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1727
diff
changeset
|
2156 const std::string& value) |
615 | 2157 { |
1727 | 2158 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2159 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2160 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2161 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2162 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2163 |
615 | 2164 result.clear(); |
2165 | |
3034
54e422fe31ce
moving LookupResource to graveyard
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3033
diff
changeset
|
2166 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true); |
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2167 |
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2168 std::vector<DatabaseConstraint> query; |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
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3061
diff
changeset
|
2169 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
3034
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2170 |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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3073
diff
changeset
|
2171 std::list<std::string> tmp; |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
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diff
changeset
|
2172 |
3034
54e422fe31ce
moving LookupResource to graveyard
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diff
changeset
|
2173 { |
54e422fe31ce
moving LookupResource to graveyard
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diff
changeset
|
2174 boost::mutex::scoped_lock lock(mutex_); |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2175 db_.ApplyLookupResources(tmp, NULL, query, level, 0); |
3034
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2176 } |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
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diff
changeset
|
2177 |
ead8576a02ef
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Sebastien Jodogne <s.jodogne@gmail.com>
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3073
diff
changeset
|
2178 CopyListToVector(result, tmp); |
615 | 2179 } |
2180 | |
2181 | |
699
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add attachments to resources
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changeset
|
2182 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
2929e17f8447
add attachments to resources
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|
2183 const std::string& publicId) |
2929e17f8447
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|
2184 { |
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diff
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|
2185 boost::mutex::scoped_lock lock(mutex_); |
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|
2186 |
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diff
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|
2187 Transaction t(*this); |
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|
2188 |
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diff
changeset
|
2189 ResourceType resourceType; |
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diff
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|
2190 int64_t resourceId; |
1294 | 2191 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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diff
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|
2192 { |
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diff
changeset
|
2193 return StoreStatus_Failure; // Inexistent resource |
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diff
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|
2194 } |
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diff
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|
2195 |
704
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diff
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|
2196 // Remove possible previous attachment |
1247 | 2197 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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diff
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|
2198 |
704
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diff
changeset
|
2199 // Locate the patient of the target resource |
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diff
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|
2200 int64_t patientId = resourceId; |
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diff
changeset
|
2201 for (;;) |
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diff
changeset
|
2202 { |
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diff
changeset
|
2203 int64_t parent; |
1247 | 2204 if (db_.LookupParent(parent, patientId)) |
704
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diff
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|
2205 { |
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diff
changeset
|
2206 // We have not reached the patient level yet |
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diff
changeset
|
2207 patientId = parent; |
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diff
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|
2208 } |
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diff
changeset
|
2209 else |
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changeset
|
2210 { |
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changeset
|
2211 // We have reached the patient level |
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changeset
|
2212 break; |
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|
2213 } |
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|
2214 } |
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changeset
|
2215 |
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diff
changeset
|
2216 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2217 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2218 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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|
2219 |
1247 | 2220 db_.AddAttachment(resourceId, attachment); |
699
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2221 |
1773
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|
2222 if (IsUserContentType(attachment.GetContentType())) |
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2223 { |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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changeset
|
2224 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
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2225 } |
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|
2226 |
699
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changeset
|
2227 t.Commit(attachment.GetCompressedSize()); |
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2228 |
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changeset
|
2229 return StoreStatus_Success; |
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2230 } |
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2231 |
702
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2232 |
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2233 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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|
2234 FileContentType type) |
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changeset
|
2235 { |
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changeset
|
2236 boost::mutex::scoped_lock lock(mutex_); |
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changeset
|
2237 Transaction t(*this); |
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|
2238 |
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changeset
|
2239 ResourceType rtype; |
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changeset
|
2240 int64_t id; |
1294 | 2241 if (!db_.LookupResource(id, rtype, publicId)) |
702
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|
2242 { |
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changeset
|
2243 throw OrthancException(ErrorCode_UnknownResource); |
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2244 } |
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2245 |
1247 | 2246 db_.DeleteAttachment(id, type); |
702
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2247 |
1773
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2248 if (IsUserContentType(type)) |
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2249 { |
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changeset
|
2250 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
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2251 } |
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2252 |
702
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701
diff
changeset
|
2253 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2254 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2255 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2256 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2257 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2258 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2259 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2260 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2261 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2262 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2263 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2264 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2265 int64_t id; |
1294 | 2266 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2267 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2268 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2269 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2270 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2271 std::list<MetadataType> metadata; |
1247 | 2272 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2273 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2274 for (std::list<MetadataType>::const_iterator |
1304 | 2275 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2276 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2277 std::string key = EnumerationToString(*it); |
1238 | 2278 |
2279 std::string value; | |
1247 | 2280 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2281 { |
2282 value.clear(); | |
2283 } | |
2284 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2285 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2286 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2287 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2288 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2289 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2290 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2291 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2292 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2293 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2294 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2295 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2296 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2297 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2298 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2299 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2300 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2301 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2302 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2303 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2304 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2305 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2306 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2307 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2308 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2309 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2310 { |
1239 | 2311 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2312 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2313 if (LookupGlobalProperty(value, property)) |
1239 | 2314 { |
2315 return value; | |
2316 } | |
2317 else | |
2318 { | |
2319 return defaultValue; | |
2320 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2321 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2322 |
1352 | 2323 |
2324 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2325 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2326 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2327 ResourceType levelOfInterest) |
1352 | 2328 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2329 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2330 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2331 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2332 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2333 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2334 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2335 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2336 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2337 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2338 |
1352 | 2339 result.Clear(); |
2340 | |
2341 boost::mutex::scoped_lock lock(mutex_); | |
2342 | |
2343 // Lookup for the requested resource | |
2344 int64_t id; | |
2345 ResourceType type; | |
2346 if (!db_.LookupResource(id, type, publicId) || | |
2347 type != expectedType) | |
2348 { | |
2349 return false; | |
2350 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2351 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2352 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2353 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2354 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2355 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2356 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2357 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2358 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2359 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2360 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2361 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2362 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2363 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2364 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2365 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2366 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2367 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2368 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2369 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2370 } |
1352 | 2371 else |
2372 { | |
2373 db_.GetMainDicomTags(result, id); | |
2374 return true; | |
2375 } | |
2376 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2377 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2378 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2379 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2380 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2381 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2382 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2383 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2384 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2385 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2386 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2387 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2388 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2389 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2390 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2391 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2392 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2393 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2394 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2395 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2396 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2397 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2398 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2399 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2400 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2401 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2402 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2403 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2404 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2405 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2406 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2407 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2408 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2409 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2410 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2411 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2412 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2413 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2414 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2415 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2416 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2417 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2418 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2419 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2420 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2421 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2422 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2423 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2424 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2425 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2426 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2427 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2428 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2429 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2430 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2431 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2432 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2433 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2434 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2435 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2436 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2437 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2438 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2439 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2440 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2441 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2442 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2443 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2444 #endif |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2445 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2446 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2447 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2448 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2449 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2450 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2451 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2452 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2453 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2454 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2455 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2456 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2457 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2458 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2459 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2460 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2461 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2462 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2463 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2464 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2465 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2466 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2467 |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2468 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2469 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2470 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2471 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2472 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2473 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2474 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2475 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2476 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2477 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2478 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2479 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2480 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2481 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2482 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2483 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2484 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2485 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2486 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2487 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2488 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2489 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2490 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2491 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2492 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2493 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2494 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2495 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2496 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2497 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2498 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2499 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2500 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2501 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2502 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2503 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2504 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2505 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2506 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2507 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2508 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2509 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2510 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2511 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2512 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2513 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2514 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2515 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2516 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2517 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2518 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2519 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2520 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2521 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2522 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2523 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2524 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2525 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2526 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2527 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2528 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2529 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2530 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2531 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2532 |
3083
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2533 { |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2534 ResourcesContent content; |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2535 content.AddResource(patient, ResourceType_Patient, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2536 content.AddResource(study, ResourceType_Study, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2537 content.AddResource(series, ResourceType_Series, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2538 content.AddResource(instance, ResourceType_Instance, summary); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2539 db_.SetResourcesContent(content); |
683d572424b6
IDatabaseWrapper::SetResourcesContent
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3082
diff
changeset
|
2540 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2541 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2542 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2543 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2544 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2545 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2546 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2547 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2548 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2549 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2550 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2551 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2552 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2553 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2554 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2555 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2556 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2557 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2558 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2559 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2560 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2561 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2562 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2563 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2564 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2565 |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2566 |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2567 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target, |
3027 | 2568 const DatabaseLookup& source, |
2569 ResourceType queryLevel) const | |
2570 { | |
2571 assert(mainDicomTagsRegistry_.get() != NULL); | |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2572 |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2573 target.clear(); |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2574 target.reserve(source.GetConstraintsCount()); |
3031 | 2575 |
3027 | 2576 for (size_t i = 0; i < source.GetConstraintsCount(); i++) |
2577 { | |
3031 | 2578 ResourceType level; |
2579 DicomTagType type; | |
3027 | 2580 |
3031 | 2581 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag()); |
2582 | |
2583 if (type == DicomTagType_Identifier || | |
2584 type == DicomTagType_Main) | |
3027 | 2585 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2586 // Use the fact that patient-level tags are copied at the study level |
3031 | 2587 if (level == ResourceType_Patient && |
2588 queryLevel != ResourceType_Patient) | |
3027 | 2589 { |
3031 | 2590 level = ResourceType_Study; |
3027 | 2591 } |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2592 |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3061
diff
changeset
|
2593 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type)); |
3027 | 2594 } |
2595 } | |
2596 } | |
2597 | |
2598 | |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2599 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId, |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3034
diff
changeset
|
2600 std::vector<std::string>* instancesId, |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2601 const DatabaseLookup& lookup, |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2602 ResourceType queryLevel, |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2603 size_t limit) |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2604 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2605 std::vector<DatabaseConstraint> normalized; |
3027 | 2606 NormalizeLookup(normalized, lookup, queryLevel); |
2607 | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2608 std::list<std::string> resourcesList, instancesList; |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2609 |
3027 | 2610 { |
2611 boost::mutex::scoped_lock lock(mutex_); | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2612 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2613 if (instancesId == NULL) |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2614 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2615 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2616 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2617 else |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2618 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2619 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2620 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2621 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2622 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2623 CopyListToVector(resourcesId, resourcesList); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2624 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2625 if (instancesId != NULL) |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2626 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2627 CopyListToVector(*instancesId, instancesList); |
3027 | 2628 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3020
diff
changeset
|
2629 } |
0 | 2630 } |