Mercurial > hg > orthanc

annotate OrthancServer/Sources/ServerJobs/MergeStudyJob.cpp @ 4889:d8c8274d4e41

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Sat, 19 Feb 2022 12:17:41 +0100
parents 43e613a7756b
children 6eff25f70121
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * In addition, as a special exception, the copyright holders of this
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14 * program give permission to link the code of its release with the
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15 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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16 * that use the same license as the "OpenSSL" library), and distribute
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17 * the linked executables. You must obey the GNU General Public License
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18 * in all respects for all of the code used other than "OpenSSL". If you
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19 * modify file(s) with this exception, you may extend this exception to
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20 * your version of the file(s), but you are not obligated to do so. If
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21 * you do not wish to do so, delete this exception statement from your
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22 * version. If you delete this exception statement from all source files
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23 * in the program, then also delete it here.
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24 *
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25 * This program is distributed in the hope that it will be useful, but
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26 * WITHOUT ANY WARRANTY; without even the implied warranty of
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27 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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28 * General Public License for more details.
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29 *
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30 * You should have received a copy of the GNU General Public License
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31 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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32 **/
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33
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35 #include "MergeStudyJob.h"
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36
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37 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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38 #include "../../../OrthancFramework/Sources/Logging.h"
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39 #include "../../../OrthancFramework/Sources/SerializationToolbox.h"
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40 #include "../OrthancConfiguration.h"
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41 #include "../ServerContext.h"
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44 namespace Orthanc
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45 {
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46 static void RegisterSeries(std::map<std::string, std::string>& target,
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47 const std::string& series)
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48 {
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49 // Generate a target SeriesInstanceUID for this series
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50 if (target.find(series) == target.end())
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51 {
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52 target[series] = FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series);
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53 }
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54 }
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55
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56
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57 void MergeStudyJob::AddSourceSeriesInternal(const std::string& series)
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58 {
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59 RegisterSeries(seriesUidMap_, series);
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60
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61 // Add all the instances of the series as to be processed
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62 std::list<std::string> instances;
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63 GetContext().GetIndex().GetChildren(instances, series);
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64
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65 for (std::list<std::string>::const_iterator
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66 it = instances.begin(); it != instances.end(); ++it)
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67 {
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68 AddInstance(*it);
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69 }
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70 }
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71
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73 void MergeStudyJob::AddSourceStudyInternal(const std::string& study)
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74 {
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75 if (study == targetStudy_)
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76 {
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77 throw OrthancException(ErrorCode_UnknownResource,
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78 "Cannot merge a study into the same study: " + study);
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79 }
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80 else
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81 {
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82 std::list<std::string> series;
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83 GetContext().GetIndex().GetChildren(series, study);
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84
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85 for (std::list<std::string>::const_iterator
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86 it = series.begin(); it != series.end(); ++it)
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87 {
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88 AddSourceSeriesInternal(*it);
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89 }
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90 }
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91 }
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92
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93
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94 bool MergeStudyJob::HandleInstance(const std::string& instance)
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95 {
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96 if (!HasTrailingStep())
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97 {
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98 throw OrthancException(ErrorCode_BadSequenceOfCalls,
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99 "AddTrailingStep() should have been called after AddSourceXXX()");
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100 }
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101
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102 /**
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103 * Retrieve the DICOM instance to be modified
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104 **/
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105
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106 std::unique_ptr<ParsedDicomFile> modified;
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107
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108 try
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109 {
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110 ServerContext::DicomCacheLocker locker(GetContext(), instance);
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111 modified.reset(locker.GetDicom().Clone(true));
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112 }
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113 catch (OrthancException&)
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114 {
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115 LOG(WARNING) << "An instance was removed after the job was issued: " << instance;
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116 return false;
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117 }
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118
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119
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120 /**
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121 * Chose the target UIDs
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122 **/
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123
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124 std::string series = modified->GetHasher().HashSeries();
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125
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126 SeriesUidMap::const_iterator targetSeriesUid = seriesUidMap_.find(series);
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127
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128 if (targetSeriesUid == seriesUidMap_.end())
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129 {
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130 throw OrthancException(ErrorCode_BadFileFormat); // Should never happen
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131 }
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132
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133
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134 /**
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135 * Copy the tags from the "Patient Module Attributes" and "General
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136 * Study Module Attributes" modules of the target study
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137 **/
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138
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139 for (std::set<DicomTag>::const_iterator it = removals_.begin();
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140 it != removals_.end(); ++it)
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141 {
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142 modified->Remove(*it);
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143 }
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144
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145 for (Replacements::const_iterator it = replacements_.begin();
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146 it != replacements_.end(); ++it)
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147 {
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148 modified->ReplacePlainString(it->first, it->second);
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149 }
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150
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151
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152 /**
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153 * Store the new instance into Orthanc
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154 **/
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155
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156 modified->ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, targetSeriesUid->second);
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157
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158 // Fix since Orthanc 1.5.8: Assign new "SOPInstanceUID", as the instance has been modified
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159 modified->ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
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160
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161 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*modified));
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162 toStore->SetOrigin(origin_);
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163
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164 std::string modifiedInstance;
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165 ServerContext::StoreResult result = GetContext().Store(modifiedInstance, *toStore, StoreInstanceMode_Default);
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166 if (result.GetStatus() != StoreStatus_Success)
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167 {
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168 LOG(ERROR) << "Error while storing a modified instance " << instance;
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169 return false;
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170 }
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171
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172 return true;
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173 }
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174
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175
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176 MergeStudyJob::MergeStudyJob(ServerContext& context,
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177 const std::string& targetStudy) :
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178 CleaningInstancesJob(context, false /* by default, remove source instances */),
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179 targetStudy_(targetStudy)
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180 {
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181 /**
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182 * Check the validity of the input ID
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183 **/
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184
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185 ResourceType type;
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186
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187 if (!GetContext().GetIndex().LookupResourceType(type, targetStudy) ||
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188 type != ResourceType_Study)
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189 {
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190 throw OrthancException(ErrorCode_UnknownResource,
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191 "Cannot merge into an unknown study: " + targetStudy);
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192 }
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193
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194
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195 /**
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196 * Detect the tags to be removed/replaced by parsing one child
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197 * instance of the study
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198 **/
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199
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200 DicomTag::AddTagsForModule(removals_, DicomModule_Patient);
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201 DicomTag::AddTagsForModule(removals_, DicomModule_Study);
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202
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203 std::list<std::string> instances;
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204 GetContext().GetIndex().GetChildInstances(instances, targetStudy);
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205
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206 if (instances.empty())
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207 {
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208 throw OrthancException(ErrorCode_UnknownResource);
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209 }
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210
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211 DicomMap dicom;
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212
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213 {
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214 ServerContext::DicomCacheLocker locker(GetContext(), instances.front());
4140
0ddc5297a8ab centralization of default parameters for JSON/DicomMap conversions from DCMTK
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diff changeset
215 OrthancConfiguration::DefaultExtractDicomSummary(dicom, locker.GetDicom());
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216 }
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217
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218 const std::set<DicomTag> moduleTags = removals_;
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219 for (std::set<DicomTag>::const_iterator it = moduleTags.begin();
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220 it != moduleTags.end(); ++it)
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221 {
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222 const DicomValue* value = dicom.TestAndGetValue(*it);
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223 std::string str;
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224
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225 if (value != NULL &&
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diff changeset
226 value->CopyToString(str, false))
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227 {
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228 removals_.erase(*it);
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diff changeset
229 replacements_.insert(std::make_pair(*it, str));
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diff changeset
230 }
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parents:
diff changeset
231 }
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diff changeset
232 }
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diff changeset
233
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234
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diff changeset
235 void MergeStudyJob::SetOrigin(const DicomInstanceOrigin& origin)
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236 {
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diff changeset
237 if (IsStarted())
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238 {
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239 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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240 }
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diff changeset
241 else
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242 {
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diff changeset
243 origin_ = origin;
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diff changeset
244 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
245 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
246
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
248 void MergeStudyJob::SetOrigin(const RestApiCall& call)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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diff changeset
249 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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diff changeset
250 SetOrigin(DicomInstanceOrigin::FromRest(call));
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
252
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
253
4715
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diff changeset
254 void MergeStudyJob::AddSource(const std::string& publicId)
2853
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diff changeset
255 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
256 ResourceType level;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
259 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 }
4715
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
262 else if (!GetContext().GetIndex().LookupResourceType(level, publicId))
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263 {
2955
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diff changeset
264 throw OrthancException(ErrorCode_UnknownResource,
4715
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
265 "Cannot find this resource: " + publicId);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 switch (level)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
270 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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diff changeset
271 case ResourceType_Study:
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diff changeset
272 AddSourceStudyInternal(publicId);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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273 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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274
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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275 case ResourceType_Series:
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diff changeset
276 AddSourceSeries(publicId);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
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diff changeset
277 break;
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
278
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
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diff changeset
279 case ResourceType_Instance:
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
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280 AddSourceInstance(publicId);
2853
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parents:
diff changeset
281 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283 default:
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diff changeset
284 throw OrthancException(ErrorCode_UnknownResource,
4715
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parents: 4508
diff changeset
285 "This resource is neither a study, nor a series, nor an instance: " +
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
286 publicId + " is a " + std::string(EnumerationToString(level)));
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
289 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292 void MergeStudyJob::AddSourceSeries(const std::string& series)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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diff changeset
293 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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diff changeset
294 std::string parent;
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parents:
diff changeset
295
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
296 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
297 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
298 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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diff changeset
299 }
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
300 else if (!GetContext().GetIndex().LookupParent(parent, series, ResourceType_Study))
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
301 {
2955
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parents: 2860
diff changeset
302 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
303 "This resource is not a series: " + series);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
305 else if (parent == targetStudy_)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
306 {
2955
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parents: 2860
diff changeset
307 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
308 "Cannot merge series " + series +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
309 " into its parent study " + targetStudy_);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313 AddSourceSeriesInternal(series);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 void MergeStudyJob::AddSourceStudy(const std::string& study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
319 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
320 ResourceType actualLevel;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 }
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
326 else if (!GetContext().GetIndex().LookupResourceType(actualLevel, study) ||
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 actualLevel != ResourceType_Study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
329 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
330 "This resource is not a study: " + study);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334 AddSourceStudyInternal(study);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
337
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
338
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
339 void MergeStudyJob::AddSourceInstance(const std::string& instance)
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
340 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
341 std::string parentStudy, parentSeries;
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
342
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
343 if (IsStarted())
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
344 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
345 throw OrthancException(ErrorCode_BadSequenceOfCalls);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
346 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
347 else if (!GetContext().GetIndex().LookupParent(parentSeries, instance, ResourceType_Series) ||
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
348 !GetContext().GetIndex().LookupParent(parentStudy, parentSeries, ResourceType_Study))
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
349 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
350 throw OrthancException(ErrorCode_UnknownResource,
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
351 "This resource is not an instance: " + instance);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
352 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
353 else if (parentStudy == targetStudy_)
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
354 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
355 throw OrthancException(ErrorCode_UnknownResource,
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
356 "Cannot merge instance " + instance +
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
357 " into its parent study " + targetStudy_);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
358 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
359 else
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
360 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
361 RegisterSeries(seriesUidMap_, parentSeries);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
362 AddInstance(instance);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
363 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
364 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
365
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
366
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367 void MergeStudyJob::GetPublicContent(Json::Value& value)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
369 CleaningInstancesJob::GetPublicContent(value);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 value["TargetStudy"] = targetStudy_;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 }
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372
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373
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374 static const char* TARGET_STUDY = "TargetStudy";
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375 static const char* REPLACEMENTS = "Replacements";
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376 static const char* REMOVALS = "Removals";
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377 static const char* SERIES_UID_MAP = "SeriesUIDMap";
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378 static const char* ORIGIN = "Origin";
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379
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380
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381 MergeStudyJob::MergeStudyJob(ServerContext& context,
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382 const Json::Value& serialized) :
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383 CleaningInstancesJob(context, serialized,
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384 false /* by default, remove source instances */) // (*)
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385 {
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386 if (!HasTrailingStep())
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387 {
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388 // Should have been set by (*)
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389 throw OrthancException(ErrorCode_InternalError);
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390 }
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391
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392 targetStudy_ = SerializationToolbox::ReadString(serialized, TARGET_STUDY);
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393 SerializationToolbox::ReadMapOfTags(replacements_, serialized, REPLACEMENTS);
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394 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS);
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395 SerializationToolbox::ReadMapOfStrings(seriesUidMap_, serialized, SERIES_UID_MAP);
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396 origin_ = DicomInstanceOrigin(serialized[ORIGIN]);
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397 }
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398
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399
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400 bool MergeStudyJob::Serialize(Json::Value& target)
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401 {
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402 if (!CleaningInstancesJob::Serialize(target))
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403 {
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404 return false;
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405 }
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406 else
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407 {
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408 target[TARGET_STUDY] = targetStudy_;
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409 SerializationToolbox::WriteMapOfTags(target, replacements_, REPLACEMENTS);
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410 SerializationToolbox::WriteSetOfTags(target, removals_, REMOVALS);
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411 SerializationToolbox::WriteMapOfStrings(target, seriesUidMap_, SERIES_UID_MAP);
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412 origin_.Serialize(target[ORIGIN]);
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413
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414 return true;
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415 }
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416 }
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417 }