Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi.cpp @ 602:d5043ff68d58
Possibility to keep the PatientID during an anonymization
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 14 Oct 2013 15:57:51 +0200 |
parents | 48c9f83587a8 |
children | b82292ba2083 60d90e48e809 |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
399 | 3 * Copyright (C) 2012-2013 Medical Physics Department, CHU of Liege, |
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4 * Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
230 | 33 #include "OrthancRestApi.h" |
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34 |
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35 #include "../Core/Compression/HierarchicalZipWriter.h" |
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36 #include "../Core/HttpClient.h" |
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37 #include "../Core/HttpServer/FilesystemHttpSender.h" |
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38 #include "../Core/Uuid.h" |
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39 #include "DicomProtocol/DicomUserConnection.h" |
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40 #include "FromDcmtkBridge.h" |
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41 #include "OrthancInitialization.h" |
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42 #include "ServerToolbox.h" |
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43 |
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44 #include <dcmtk/dcmdata/dcistrmb.h> |
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45 #include <dcmtk/dcmdata/dcfilefo.h> |
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46 #include <boost/lexical_cast.hpp> |
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47 #include <glog/logging.h> |
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48 |
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49 |
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50 #define RETRIEVE_CONTEXT(call) \ |
230 | 51 OrthancRestApi& contextApi = \ |
52 dynamic_cast<OrthancRestApi&>(call.GetContext()); \ | |
225 | 53 ServerContext& context = contextApi.GetContext() |
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54 |
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55 #define RETRIEVE_MODALITIES(call) \ |
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56 const OrthancRestApi::SetOfStrings& modalities = \ |
230 | 57 dynamic_cast<OrthancRestApi&>(call.GetContext()).GetModalities(); |
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58 |
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59 #define RETRIEVE_PEERS(call) \ |
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60 const OrthancRestApi::SetOfStrings& peers = \ |
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61 dynamic_cast<OrthancRestApi&>(call.GetContext()).GetPeers(); |
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62 |
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63 |
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64 |
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65 namespace Orthanc |
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66 { |
315 | 67 // TODO IMPROVE MULTITHREADING |
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68 // Every call to "ParsedDicomFile" must lock this mutex!!! |
315 | 69 static boost::mutex cacheMutex_; |
70 | |
71 | |
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72 // DICOM SCU ---------------------------------------------------------------- |
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73 |
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74 static void ConnectToModality(DicomUserConnection& connection, |
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75 const std::string& name) |
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76 { |
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77 std::string aet, address; |
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78 int port; |
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79 ModalityManufacturer manufacturer; |
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80 GetDicomModality(name, aet, address, port, manufacturer); |
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81 connection.SetLocalApplicationEntityTitle(GetGlobalStringParameter("DicomAet", "ORTHANC")); |
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82 connection.SetDistantApplicationEntityTitle(aet); |
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83 connection.SetDistantHost(address); |
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84 connection.SetDistantPort(port); |
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85 connection.SetDistantManufacturer(manufacturer); |
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86 connection.Open(); |
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87 } |
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88 |
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89 static bool MergeQueryAndTemplate(DicomMap& result, |
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90 const std::string& postData) |
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91 { |
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92 Json::Value query; |
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93 Json::Reader reader; |
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94 |
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95 if (!reader.parse(postData, query) || |
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96 query.type() != Json::objectValue) |
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97 { |
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98 return false; |
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99 } |
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100 |
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101 Json::Value::Members members = query.getMemberNames(); |
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102 for (size_t i = 0; i < members.size(); i++) |
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103 { |
304 | 104 DicomTag t = FromDcmtkBridge::ParseTag(members[i]); |
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105 result.SetValue(t, query[members[i]].asString()); |
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106 } |
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107 |
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108 return true; |
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109 } |
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110 |
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111 static void DicomFindPatient(RestApi::PostCall& call) |
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112 { |
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113 DicomMap m; |
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114 DicomMap::SetupFindPatientTemplate(m); |
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115 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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116 { |
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117 return; |
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118 } |
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119 |
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120 DicomUserConnection connection; |
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121 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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122 |
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123 DicomFindAnswers answers; |
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124 connection.FindPatient(answers, m); |
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125 |
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126 Json::Value result; |
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127 answers.ToJson(result); |
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128 call.GetOutput().AnswerJson(result); |
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129 } |
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130 |
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131 static void DicomFindStudy(RestApi::PostCall& call) |
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132 { |
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133 DicomMap m; |
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134 DicomMap::SetupFindStudyTemplate(m); |
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135 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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136 { |
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137 return; |
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138 } |
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139 |
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140 if (m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 && |
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141 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) |
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142 { |
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143 return; |
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144 } |
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145 |
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146 DicomUserConnection connection; |
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147 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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148 |
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149 DicomFindAnswers answers; |
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150 connection.FindStudy(answers, m); |
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151 |
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152 Json::Value result; |
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153 answers.ToJson(result); |
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154 call.GetOutput().AnswerJson(result); |
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155 } |
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156 |
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157 static void DicomFindSeries(RestApi::PostCall& call) |
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158 { |
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159 DicomMap m; |
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160 DicomMap::SetupFindSeriesTemplate(m); |
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161 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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162 { |
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163 return; |
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164 } |
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165 |
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166 if ((m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 && |
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167 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) || |
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168 m.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString().size() <= 2) |
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169 { |
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170 return; |
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171 } |
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172 |
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173 DicomUserConnection connection; |
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174 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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175 |
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176 DicomFindAnswers answers; |
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177 connection.FindSeries(answers, m); |
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178 |
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179 Json::Value result; |
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180 answers.ToJson(result); |
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181 call.GetOutput().AnswerJson(result); |
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182 } |
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183 |
499
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184 static void DicomFindInstance(RestApi::PostCall& call) |
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185 { |
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186 DicomMap m; |
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187 DicomMap::SetupFindInstanceTemplate(m); |
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188 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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189 { |
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190 return; |
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191 } |
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192 |
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193 if ((m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 && |
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194 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) || |
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195 m.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString().size() <= 2 || |
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196 m.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).AsString().size() <= 2) |
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197 { |
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198 return; |
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199 } |
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200 |
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201 DicomUserConnection connection; |
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202 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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203 |
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204 DicomFindAnswers answers; |
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205 connection.FindInstance(answers, m); |
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206 |
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207 Json::Value result; |
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208 answers.ToJson(result); |
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209 call.GetOutput().AnswerJson(result); |
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210 } |
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211 |
227
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212 static void DicomFind(RestApi::PostCall& call) |
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213 { |
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214 DicomMap m; |
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215 DicomMap::SetupFindPatientTemplate(m); |
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216 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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217 { |
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218 return; |
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219 } |
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220 |
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221 DicomUserConnection connection; |
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222 ConnectToModality(connection, call.GetUriComponent("id", "")); |
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223 |
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224 DicomFindAnswers patients; |
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225 connection.FindPatient(patients, m); |
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226 |
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227 // Loop over the found patients |
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228 Json::Value result = Json::arrayValue; |
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229 for (size_t i = 0; i < patients.GetSize(); i++) |
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230 { |
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231 Json::Value patient(Json::objectValue); |
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232 FromDcmtkBridge::ToJson(patient, patients.GetAnswer(i)); |
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233 |
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234 DicomMap::SetupFindStudyTemplate(m); |
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235 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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236 { |
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237 return; |
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238 } |
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239 m.CopyTagIfExists(patients.GetAnswer(i), DICOM_TAG_PATIENT_ID); |
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240 |
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241 DicomFindAnswers studies; |
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242 connection.FindStudy(studies, m); |
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243 |
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244 patient["Studies"] = Json::arrayValue; |
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245 |
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246 // Loop over the found studies |
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247 for (size_t j = 0; j < studies.GetSize(); j++) |
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248 { |
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249 Json::Value study(Json::objectValue); |
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250 FromDcmtkBridge::ToJson(study, studies.GetAnswer(j)); |
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251 |
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252 DicomMap::SetupFindSeriesTemplate(m); |
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253 if (!MergeQueryAndTemplate(m, call.GetPostBody())) |
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254 { |
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255 return; |
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256 } |
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257 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_PATIENT_ID); |
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258 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_STUDY_INSTANCE_UID); |
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259 |
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260 DicomFindAnswers series; |
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261 connection.FindSeries(series, m); |
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262 |
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263 // Loop over the found series |
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264 study["Series"] = Json::arrayValue; |
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265 for (size_t k = 0; k < series.GetSize(); k++) |
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266 { |
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267 Json::Value series2(Json::objectValue); |
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268 FromDcmtkBridge::ToJson(series2, series.GetAnswer(k)); |
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269 study["Series"].append(series2); |
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270 } |
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271 |
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272 patient["Studies"].append(study); |
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273 } |
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274 |
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275 result.append(patient); |
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276 } |
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277 |
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278 call.GetOutput().AnswerJson(result); |
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279 } |
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280 |
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281 |
485
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282 static bool GetInstancesToExport(std::list<std::string>& instances, |
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283 const std::string& remote, |
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284 RestApi::PostCall& call) |
227
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285 { |
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286 RETRIEVE_CONTEXT(call); |
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287 |
402 | 288 std::string stripped = Toolbox::StripSpaces(call.GetPostBody()); |
289 | |
290 Json::Value request; | |
291 if (Toolbox::IsSHA1(stripped)) | |
292 { | |
293 // This is for compatibility with Orthanc <= 0.5.1. | |
294 request = stripped; | |
295 } | |
296 else if (!call.ParseJsonRequest(request)) | |
297 { | |
298 // Bad JSON request | |
485
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299 return false; |
402 | 300 } |
301 | |
302 if (request.isString()) | |
303 { | |
304 context.GetIndex().LogExportedResource(request.asString(), remote); | |
305 context.GetIndex().GetChildInstances(instances, request.asString()); | |
306 } | |
307 else if (request.isArray()) | |
308 { | |
309 for (Json::Value::ArrayIndex i = 0; i < request.size(); i++) | |
310 { | |
311 if (!request[i].isString()) | |
312 { | |
485
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313 return false; |
402 | 314 } |
315 | |
316 std::string stripped = Toolbox::StripSpaces(request[i].asString()); | |
317 if (!Toolbox::IsSHA1(stripped)) | |
318 { | |
485
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319 return false; |
402 | 320 } |
321 | |
322 context.GetIndex().LogExportedResource(stripped, remote); | |
323 | |
324 std::list<std::string> tmp; | |
325 context.GetIndex().GetChildInstances(tmp, stripped); | |
326 instances.merge(tmp); | |
327 assert(tmp.size() == 0); | |
328 } | |
329 } | |
330 else | |
331 { | |
332 // Neither a string, nor a list of strings. Bad request. | |
485
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333 return false; |
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334 } |
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335 |
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336 return true; |
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337 } |
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338 |
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339 |
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340 static void DicomStore(RestApi::PostCall& call) |
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341 { |
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342 RETRIEVE_CONTEXT(call); |
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343 |
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344 std::string remote = call.GetUriComponent("id", ""); |
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345 |
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346 std::list<std::string> instances; |
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347 if (!GetInstancesToExport(instances, remote, call)) |
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348 { |
402 | 349 return; |
350 } | |
351 | |
227
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352 DicomUserConnection connection; |
231 | 353 ConnectToModality(connection, remote); |
354 | |
402 | 355 for (std::list<std::string>::const_iterator |
356 it = instances.begin(); it != instances.end(); it++) | |
227
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357 { |
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358 LOG(INFO) << "Sending resource " << *it << " to modality \"" << remote << "\""; |
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359 |
402 | 360 std::string dicom; |
361 context.ReadFile(dicom, *it, FileContentType_Dicom); | |
362 connection.Store(dicom); | |
227
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363 } |
231 | 364 |
402 | 365 call.GetOutput().AnswerBuffer("{}", "application/json"); |
227
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366 } |
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367 |
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368 |
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369 |
210
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370 // System information ------------------------------------------------------- |
211 | 371 |
372 static void ServeRoot(RestApi::GetCall& call) | |
373 { | |
374 call.GetOutput().Redirect("app/explorer.html"); | |
375 } | |
210
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376 |
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377 static void GetSystemInformation(RestApi::GetCall& call) |
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378 { |
238 | 379 Json::Value result = Json::objectValue; |
210
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380 |
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381 result["Version"] = ORTHANC_VERSION; |
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382 result["Name"] = GetGlobalStringParameter("Name", ""); |
238 | 383 |
384 call.GetOutput().AnswerJson(result); | |
385 } | |
227
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386 |
238 | 387 static void GetStatistics(RestApi::GetCall& call) |
388 { | |
389 RETRIEVE_CONTEXT(call); | |
390 Json::Value result = Json::objectValue; | |
391 context.GetIndex().ComputeStatistics(result); | |
210
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392 call.GetOutput().AnswerJson(result); |
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393 } |
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394 |
342
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395 static void GenerateUid(RestApi::GetCall& call) |
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396 { |
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397 std::string level = call.GetArgument("level", ""); |
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398 if (level == "patient") |
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399 { |
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400 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Patient), "text/plain"); |
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401 } |
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402 else if (level == "study") |
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403 { |
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404 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Study), "text/plain"); |
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405 } |
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406 else if (level == "series") |
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407 { |
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408 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Series), "text/plain"); |
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409 } |
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410 else if (level == "instance") |
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411 { |
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412 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Instance), "text/plain"); |
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413 } |
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414 } |
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415 |
418
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416 static void ExecuteScript(RestApi::PostCall& call) |
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417 { |
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418 std::string result; |
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419 RETRIEVE_CONTEXT(call); |
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420 context.GetLuaContext().Execute(result, call.GetPostBody()); |
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421 call.GetOutput().AnswerBuffer(result, "text/plain"); |
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422 } |
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423 |
446 | 424 static void GetNowIsoString(RestApi::GetCall& call) |
425 { | |
426 call.GetOutput().AnswerBuffer(Toolbox::GetNowIsoString(), "text/plain"); | |
427 } | |
428 | |
429 | |
430 | |
418
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431 |
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432 |
210
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433 |
211 | 434 // List all the patients, studies, series or instances ---------------------- |
435 | |
436 template <enum ResourceType resourceType> | |
437 static void ListResources(RestApi::GetCall& call) | |
438 { | |
439 RETRIEVE_CONTEXT(call); | |
440 | |
441 Json::Value result; | |
442 context.GetIndex().GetAllUuids(result, resourceType); | |
443 call.GetOutput().AnswerJson(result); | |
444 } | |
445 | |
212 | 446 template <enum ResourceType resourceType> |
447 static void GetSingleResource(RestApi::GetCall& call) | |
448 { | |
449 RETRIEVE_CONTEXT(call); | |
450 | |
451 Json::Value result; | |
452 if (context.GetIndex().LookupResource(result, call.GetUriComponent("id", ""), resourceType)) | |
453 { | |
454 call.GetOutput().AnswerJson(result); | |
455 } | |
456 } | |
457 | |
458 template <enum ResourceType resourceType> | |
459 static void DeleteSingleResource(RestApi::DeleteCall& call) | |
460 { | |
461 RETRIEVE_CONTEXT(call); | |
462 | |
463 Json::Value result; | |
464 if (context.GetIndex().DeleteResource(result, call.GetUriComponent("id", ""), resourceType)) | |
465 { | |
466 call.GetOutput().AnswerJson(result); | |
467 } | |
468 } | |
469 | |
211 | 470 |
248
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471 // Download of ZIP files ---------------------------------------------------- |
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472 |
250
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473 |
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474 static std::string GetDirectoryNameInArchive(const Json::Value& resource, |
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475 ResourceType resourceType) |
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476 { |
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477 switch (resourceType) |
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478 { |
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479 case ResourceType_Patient: |
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480 { |
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481 std::string p = resource["MainDicomTags"]["PatientID"].asString(); |
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482 std::string n = resource["MainDicomTags"]["PatientName"].asString(); |
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483 return p + " " + n; |
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484 } |
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485 |
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486 case ResourceType_Study: |
253 | 487 { |
250
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488 return resource["MainDicomTags"]["StudyDescription"].asString(); |
253 | 489 } |
250
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490 |
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491 case ResourceType_Series: |
253 | 492 { |
493 std::string d = resource["MainDicomTags"]["SeriesDescription"].asString(); | |
494 std::string m = resource["MainDicomTags"]["Modality"].asString(); | |
495 return m + " " + d; | |
496 } | |
250
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497 |
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498 default: |
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499 throw OrthancException(ErrorCode_InternalError); |
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500 } |
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501 } |
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502 |
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503 static bool CreateRootDirectoryInArchive(HierarchicalZipWriter& writer, |
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504 ServerContext& context, |
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505 const Json::Value& resource, |
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506 ResourceType resourceType) |
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507 { |
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508 if (resourceType == ResourceType_Patient) |
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509 { |
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510 return true; |
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511 } |
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512 |
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513 ResourceType parentType = GetParentResourceType(resourceType); |
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514 Json::Value parent; |
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515 |
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516 switch (resourceType) |
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517 { |
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518 case ResourceType_Study: |
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519 { |
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520 if (!context.GetIndex().LookupResource(parent, resource["ParentPatient"].asString(), parentType)) |
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521 { |
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522 return false; |
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523 } |
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524 |
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525 break; |
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526 } |
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527 |
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528 case ResourceType_Series: |
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529 if (!context.GetIndex().LookupResource(parent, resource["ParentStudy"].asString(), parentType) || |
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530 !CreateRootDirectoryInArchive(writer, context, parent, parentType)) |
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531 { |
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532 return false; |
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533 } |
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534 break; |
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535 |
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536 default: |
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537 throw OrthancException(ErrorCode_NotImplemented); |
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538 } |
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539 |
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540 writer.OpenDirectory(GetDirectoryNameInArchive(parent, parentType).c_str()); |
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541 return true; |
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542 } |
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543 |
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544 static bool ArchiveInstance(HierarchicalZipWriter& writer, |
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545 ServerContext& context, |
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546 const std::string& instancePublicId) |
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547 { |
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548 Json::Value instance; |
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549 if (!context.GetIndex().LookupResource(instance, instancePublicId, ResourceType_Instance)) |
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550 { |
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551 return false; |
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552 } |
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553 |
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554 std::string filename = instance["MainDicomTags"]["SOPInstanceUID"].asString() + ".dcm"; |
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555 writer.OpenFile(filename.c_str()); |
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556 |
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557 std::string dicom; |
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558 context.ReadFile(dicom, instancePublicId, FileContentType_Dicom); |
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559 writer.Write(dicom); |
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560 |
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561 return true; |
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562 } |
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563 |
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564 static bool ArchiveInternal(HierarchicalZipWriter& writer, |
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565 ServerContext& context, |
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566 const std::string& publicId, |
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567 ResourceType resourceType, |
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568 bool isFirstLevel) |
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569 { |
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570 Json::Value resource; |
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571 if (!context.GetIndex().LookupResource(resource, publicId, resourceType)) |
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572 { |
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573 return false; |
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574 } |
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575 |
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576 if (isFirstLevel && |
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577 !CreateRootDirectoryInArchive(writer, context, resource, resourceType)) |
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578 { |
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579 return false; |
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580 } |
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581 |
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582 writer.OpenDirectory(GetDirectoryNameInArchive(resource, resourceType).c_str()); |
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583 |
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584 switch (resourceType) |
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585 { |
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586 case ResourceType_Patient: |
299 | 587 for (Json::Value::ArrayIndex i = 0; i < resource["Studies"].size(); i++) |
250
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588 { |
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589 std::string studyId = resource["Studies"][i].asString(); |
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590 if (!ArchiveInternal(writer, context, studyId, ResourceType_Study, false)) |
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591 { |
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592 return false; |
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593 } |
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594 } |
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595 break; |
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596 |
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597 case ResourceType_Study: |
299 | 598 for (Json::Value::ArrayIndex i = 0; i < resource["Series"].size(); i++) |
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599 { |
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600 std::string seriesId = resource["Series"][i].asString(); |
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601 if (!ArchiveInternal(writer, context, seriesId, ResourceType_Series, false)) |
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602 { |
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603 return false; |
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604 } |
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605 } |
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606 break; |
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607 |
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608 case ResourceType_Series: |
299 | 609 for (Json::Value::ArrayIndex i = 0; i < resource["Instances"].size(); i++) |
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610 { |
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611 if (!ArchiveInstance(writer, context, resource["Instances"][i].asString())) |
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612 { |
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613 return false; |
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614 } |
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615 } |
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616 break; |
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617 |
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618 default: |
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619 throw OrthancException(ErrorCode_InternalError); |
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620 } |
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621 |
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622 writer.CloseDirectory(); |
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623 return true; |
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624 } |
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625 |
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626 template <enum ResourceType resourceType> |
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627 static void GetArchive(RestApi::GetCall& call) |
248
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628 { |
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629 RETRIEVE_CONTEXT(call); |
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630 |
250
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631 // Create a RAII for the temporary file to manage the ZIP file |
248
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632 Toolbox::TemporaryFile tmp; |
250
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633 std::string id = call.GetUriComponent("id", ""); |
248
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634 |
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635 { |
250
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636 // Create a ZIP writer |
248
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637 HierarchicalZipWriter writer(tmp.GetPath().c_str()); |
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638 |
250
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639 // Store the requested resource into the ZIP |
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640 if (!ArchiveInternal(writer, context, id, resourceType, true)) |
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641 { |
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642 return; |
248
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643 } |
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644 } |
250
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645 |
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646 // Prepare the sending of the ZIP file |
248
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647 FilesystemHttpSender sender(tmp.GetPath().c_str()); |
250
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648 sender.SetContentType("application/zip"); |
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649 sender.SetDownloadFilename(id + ".zip"); |
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650 |
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651 // Send the ZIP |
248
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652 call.GetOutput().AnswerFile(sender); |
250
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653 |
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654 // The temporary file is automatically removed thanks to the RAII |
248
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655 } |
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656 |
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657 |
210
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658 // Changes API -------------------------------------------------------------- |
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659 |
231 | 660 static void GetSinceAndLimit(int64_t& since, |
661 unsigned int& limit, | |
237
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662 bool& last, |
231 | 663 const RestApi::GetCall& call) |
210
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664 { |
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665 static const unsigned int MAX_RESULTS = 100; |
237
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666 |
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667 if (call.HasArgument("last")) |
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668 { |
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669 last = true; |
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670 return; |
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671 } |
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672 |
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673 last = false; |
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674 |
210
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675 try |
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676 { |
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677 since = boost::lexical_cast<int64_t>(call.GetArgument("since", "0")); |
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678 limit = boost::lexical_cast<unsigned int>(call.GetArgument("limit", "0")); |
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679 } |
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680 catch (boost::bad_lexical_cast) |
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681 { |
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682 return; |
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683 } |
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684 |
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685 if (limit == 0 || limit > MAX_RESULTS) |
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686 { |
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687 limit = MAX_RESULTS; |
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688 } |
231 | 689 } |
690 | |
691 static void GetChanges(RestApi::GetCall& call) | |
692 { | |
693 RETRIEVE_CONTEXT(call); | |
694 | |
695 //std::string filter = GetArgument(getArguments, "filter", ""); | |
696 int64_t since; | |
697 unsigned int limit; | |
237
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698 bool last; |
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699 GetSinceAndLimit(since, limit, last, call); |
210
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700 |
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701 Json::Value result; |
237
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702 if ((!last && context.GetIndex().GetChanges(result, since, limit)) || |
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703 ( last && context.GetIndex().GetLastChange(result))) |
210
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704 { |
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|
705 call.GetOutput().AnswerJson(result); |
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706 } |
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707 } |
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|
708 |
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|
709 |
413
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710 static void DeleteChanges(RestApi::DeleteCall& call) |
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711 { |
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712 RETRIEVE_CONTEXT(call); |
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713 context.GetIndex().DeleteChanges(); |
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714 call.GetOutput().AnswerBuffer("", "text/plain"); |
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715 } |
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716 |
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717 |
231 | 718 static void GetExports(RestApi::GetCall& call) |
719 { | |
720 RETRIEVE_CONTEXT(call); | |
721 | |
722 int64_t since; | |
723 unsigned int limit; | |
237
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724 bool last; |
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725 GetSinceAndLimit(since, limit, last, call); |
231 | 726 |
727 Json::Value result; | |
237
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728 if ((!last && context.GetIndex().GetExportedResources(result, since, limit)) || |
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729 ( last && context.GetIndex().GetLastExportedResource(result))) |
231 | 730 { |
731 call.GetOutput().AnswerJson(result); | |
732 } | |
733 } | |
734 | |
413
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735 |
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736 static void DeleteExports(RestApi::DeleteCall& call) |
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737 { |
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738 RETRIEVE_CONTEXT(call); |
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739 context.GetIndex().DeleteExportedResources(); |
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740 call.GetOutput().AnswerBuffer("", "text/plain"); |
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741 } |
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742 |
210
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743 |
272
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744 // Get information about a single patient ----------------------------------- |
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745 |
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746 static void IsProtectedPatient(RestApi::GetCall& call) |
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747 { |
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748 RETRIEVE_CONTEXT(call); |
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749 std::string publicId = call.GetUriComponent("id", ""); |
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750 bool isProtected = context.GetIndex().IsProtectedPatient(publicId); |
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751 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", "text/plain"); |
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752 } |
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753 |
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754 |
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755 static void SetPatientProtection(RestApi::PutCall& call) |
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756 { |
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757 RETRIEVE_CONTEXT(call); |
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758 std::string publicId = call.GetUriComponent("id", ""); |
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759 std::string s = Toolbox::StripSpaces(call.GetPutBody()); |
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760 |
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761 if (s == "0") |
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762 { |
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763 context.GetIndex().SetProtectedPatient(publicId, false); |
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764 call.GetOutput().AnswerBuffer("", "text/plain"); |
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765 } |
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766 else if (s == "1") |
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767 { |
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768 context.GetIndex().SetProtectedPatient(publicId, true); |
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769 call.GetOutput().AnswerBuffer("", "text/plain"); |
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770 } |
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771 else |
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772 { |
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773 // Bad request |
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774 } |
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775 } |
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776 |
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777 |
213
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778 // Get information about a single instance ---------------------------------- |
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779 |
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780 static void GetInstanceFile(RestApi::GetCall& call) |
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781 { |
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782 RETRIEVE_CONTEXT(call); |
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783 |
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784 std::string publicId = call.GetUriComponent("id", ""); |
233 | 785 context.AnswerFile(call.GetOutput(), publicId, FileContentType_Dicom); |
213
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786 } |
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787 |
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788 |
483
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789 static void ExportInstanceFile(RestApi::PostCall& call) |
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790 { |
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791 RETRIEVE_CONTEXT(call); |
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792 |
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793 std::string publicId = call.GetUriComponent("id", ""); |
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794 |
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795 std::string dicom; |
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796 context.ReadFile(dicom, publicId, FileContentType_Dicom); |
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797 |
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798 Toolbox::WriteFile(dicom, call.GetPostBody()); |
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799 |
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800 call.GetOutput().AnswerBuffer("{}", "application/json"); |
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801 } |
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802 |
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803 |
213
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804 template <bool simplify> |
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805 static void GetInstanceTags(RestApi::GetCall& call) |
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806 { |
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807 RETRIEVE_CONTEXT(call); |
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808 |
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809 std::string publicId = call.GetUriComponent("id", ""); |
226
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810 |
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811 Json::Value full; |
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812 context.ReadJson(full, publicId); |
213
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813 |
226
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814 if (simplify) |
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815 { |
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816 Json::Value simplified; |
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817 SimplifyTags(simplified, full); |
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818 call.GetOutput().AnswerJson(simplified); |
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819 } |
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820 else |
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821 { |
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822 call.GetOutput().AnswerJson(full); |
213
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823 } |
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824 } |
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825 |
214 | 826 |
827 static void ListFrames(RestApi::GetCall& call) | |
828 { | |
829 RETRIEVE_CONTEXT(call); | |
830 | |
831 Json::Value instance; | |
832 if (context.GetIndex().LookupResource(instance, call.GetUriComponent("id", ""), ResourceType_Instance)) | |
833 { | |
834 unsigned int numberOfFrames = 1; | |
835 | |
836 try | |
837 { | |
838 Json::Value tmp = instance["MainDicomTags"]["NumberOfFrames"]; | |
839 numberOfFrames = boost::lexical_cast<unsigned int>(tmp.asString()); | |
840 } | |
841 catch (...) | |
842 { | |
843 } | |
844 | |
845 Json::Value result = Json::arrayValue; | |
846 for (unsigned int i = 0; i < numberOfFrames; i++) | |
847 { | |
848 result.append(i); | |
849 } | |
850 | |
851 call.GetOutput().AnswerJson(result); | |
852 } | |
853 } | |
854 | |
213
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855 |
215
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856 template <enum ImageExtractionMode mode> |
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857 static void GetImage(RestApi::GetCall& call) |
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858 { |
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859 RETRIEVE_CONTEXT(call); |
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860 |
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861 std::string frameId = call.GetUriComponent("frame", "0"); |
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862 |
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863 unsigned int frame; |
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864 try |
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865 { |
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866 frame = boost::lexical_cast<unsigned int>(frameId); |
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867 } |
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868 catch (boost::bad_lexical_cast) |
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869 { |
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870 return; |
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871 } |
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872 |
227
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873 std::string publicId = call.GetUriComponent("id", ""); |
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874 std::string dicomContent, png; |
233 | 875 context.ReadFile(dicomContent, publicId, FileContentType_Dicom); |
215
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876 |
227
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877 try |
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878 { |
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879 FromDcmtkBridge::ExtractPngImage(png, dicomContent, frame, mode); |
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880 call.GetOutput().AnswerBuffer(png, "image/png"); |
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881 } |
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882 catch (OrthancException& e) |
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883 { |
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884 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange) |
215
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885 { |
227
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886 // The frame number is out of the range for this DICOM |
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887 // instance, the resource is not existent |
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888 } |
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889 else |
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890 { |
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891 std::string root = ""; |
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892 for (size_t i = 1; i < call.GetFullUri().size(); i++) |
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893 { |
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894 root += "../"; |
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895 } |
218 | 896 |
227
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897 call.GetOutput().Redirect(root + "app/images/unsupported.png"); |
215
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898 } |
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899 } |
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900 } |
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901 |
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902 |
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903 // Upload of DICOM files through HTTP --------------------------------------- |
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904 |
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905 static void UploadDicomFile(RestApi::PostCall& call) |
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906 { |
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907 RETRIEVE_CONTEXT(call); |
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908 |
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909 const std::string& postData = call.GetPostBody(); |
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910 if (postData.size() == 0) |
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911 { |
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912 return; |
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913 } |
216
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914 |
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915 LOG(INFO) << "Receiving a DICOM file of " << postData.size() << " bytes through HTTP"; |
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916 |
304 | 917 std::string publicId; |
918 StoreStatus status = context.Store(publicId, postData); | |
216
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919 Json::Value result = Json::objectValue; |
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920 |
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921 if (status != StoreStatus_Failure) |
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922 { |
304 | 923 result["ID"] = publicId; |
924 result["Path"] = GetBasePath(ResourceType_Instance, publicId); | |
216
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925 } |
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926 |
434
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|
927 result["Status"] = EnumerationToString(status); |
216
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928 call.GetOutput().AnswerJson(result); |
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929 } |
215
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930 |
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931 |
304 | 932 |
210
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933 // DICOM bridge ------------------------------------------------------------- |
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934 |
484
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935 static bool IsExistingModality(const OrthancRestApi::SetOfStrings& modalities, |
227
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936 const std::string& id) |
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937 { |
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938 return modalities.find(id) != modalities.end(); |
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939 } |
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940 |
210
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941 static void ListModalities(RestApi::GetCall& call) |
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942 { |
227
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943 RETRIEVE_MODALITIES(call); |
210
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944 |
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945 Json::Value result = Json::arrayValue; |
484
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946 for (OrthancRestApi::SetOfStrings::const_iterator |
227
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947 it = modalities.begin(); it != modalities.end(); it++) |
210
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948 { |
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949 result.append(*it); |
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950 } |
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|
951 |
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|
952 call.GetOutput().AnswerJson(result); |
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953 } |
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|
954 |
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|
955 |
227
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956 static void ListModalityOperations(RestApi::GetCall& call) |
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957 { |
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958 RETRIEVE_MODALITIES(call); |
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959 |
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960 std::string id = call.GetUriComponent("id", ""); |
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961 if (IsExistingModality(modalities, id)) |
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962 { |
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963 Json::Value result = Json::arrayValue; |
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964 result.append("find-patient"); |
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965 result.append("find-study"); |
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966 result.append("find-series"); |
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967 result.append("find-instance"); |
227
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968 result.append("find"); |
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969 result.append("store"); |
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970 call.GetOutput().AnswerJson(result); |
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971 } |
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972 } |
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|
973 |
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974 |
213
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975 |
285
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976 // Raw access to the DICOM tags of an instance ------------------------------ |
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977 |
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978 static void GetRawContent(RestApi::GetCall& call) |
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979 { |
315 | 980 boost::mutex::scoped_lock lock(cacheMutex_); |
285
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981 |
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982 RETRIEVE_CONTEXT(call); |
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983 std::string id = call.GetUriComponent("id", ""); |
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984 ParsedDicomFile& dicom = context.GetDicomFile(id); |
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985 dicom.SendPathValue(call.GetOutput(), call.GetTrailingUri()); |
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986 } |
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|
987 |
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|
988 |
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|
989 |
304 | 990 // Modification of DICOM instances ------------------------------------------ |
991 | |
311 | 992 namespace |
993 { | |
994 typedef std::set<DicomTag> Removals; | |
995 typedef std::map<DicomTag, std::string> Replacements; | |
350
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996 typedef std::map< std::pair<DicomRootLevel, std::string>, std::string> UidMap; |
311 | 997 } |
310 | 998 |
305
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999 static void ReplaceInstanceInternal(ParsedDicomFile& toModify, |
310 | 1000 const Removals& removals, |
1001 const Replacements& replacements, | |
312 | 1002 DicomReplaceMode mode, |
1003 bool removePrivateTags) | |
304 | 1004 { |
312 | 1005 if (removePrivateTags) |
1006 { | |
1007 toModify.RemovePrivateTags(); | |
1008 } | |
1009 | |
310 | 1010 for (Removals::const_iterator it = removals.begin(); |
1011 it != removals.end(); it++) | |
1012 { | |
1013 toModify.Remove(*it); | |
1014 } | |
1015 | |
1016 for (Replacements::const_iterator it = replacements.begin(); | |
1017 it != replacements.end(); it++) | |
1018 { | |
1019 toModify.Replace(it->first, it->second, mode); | |
1020 } | |
1021 | |
1022 // A new SOP instance UID is automatically generated | |
1023 std::string instanceUid = FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Instance); | |
1024 toModify.Replace(DICOM_TAG_SOP_INSTANCE_UID, instanceUid, DicomReplaceMode_InsertIfAbsent); | |
1025 } | |
1026 | |
1027 | |
1028 static void ParseRemovals(Removals& target, | |
1029 const Json::Value& removals) | |
1030 { | |
1031 if (!removals.isArray()) | |
304 | 1032 { |
1033 throw OrthancException(ErrorCode_BadRequest); | |
1034 } | |
1035 | |
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1036 for (Json::Value::ArrayIndex i = 0; i < removals.size(); i++) |
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1037 { |
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1038 std::string name = removals[i].asString(); |
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1039 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
310 | 1040 target.insert(tag); |
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1041 |
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1042 VLOG(1) << "Removal: " << name << " " << tag << std::endl; |
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1043 } |
310 | 1044 } |
1045 | |
1046 | |
1047 static void ParseReplacements(Replacements& target, | |
1048 const Json::Value& replacements) | |
1049 { | |
1050 if (!replacements.isObject()) | |
1051 { | |
1052 throw OrthancException(ErrorCode_BadRequest); | |
1053 } | |
1054 | |
304 | 1055 Json::Value::Members members = replacements.getMemberNames(); |
1056 for (size_t i = 0; i < members.size(); i++) | |
1057 { | |
1058 const std::string& name = members[i]; | |
1059 std::string value = replacements[name].asString(); | |
1060 | |
1061 DicomTag tag = FromDcmtkBridge::ParseTag(name); | |
310 | 1062 target[tag] = value; |
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1063 |
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1064 VLOG(1) << "Replacement: " << name << " " << tag << " == " << value << std::endl; |
304 | 1065 } |
1066 } | |
1067 | |
310 | 1068 |
311 | 1069 static std::string GeneratePatientName(ServerContext& context) |
1070 { | |
1071 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); | |
1072 return "Anonymized" + boost::lexical_cast<std::string>(seq); | |
1073 } | |
1074 | |
1075 | |
310 | 1076 static void SetupAnonymization(Removals& removals, |
1077 Replacements& replacements) | |
1078 { | |
311 | 1079 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles |
310 | 1080 removals.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID |
311 | 1081 //removals.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set by ReplaceInstanceInternal() |
1082 removals.insert(DicomTag(0x0008, 0x0050)); // Accession Number | |
1083 removals.insert(DicomTag(0x0008, 0x0080)); // Institution Name | |
1084 removals.insert(DicomTag(0x0008, 0x0081)); // Institution Address | |
1085 removals.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name | |
1086 removals.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address | |
1087 removals.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers | |
1088 removals.insert(DicomTag(0x0008, 0x1010)); // Station Name | |
1089 removals.insert(DicomTag(0x0008, 0x1030)); // Study Description | |
1090 removals.insert(DicomTag(0x0008, 0x103e)); // Series Description | |
1091 removals.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name | |
1092 removals.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record | |
1093 removals.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name | |
1094 removals.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study | |
1095 removals.insert(DicomTag(0x0008, 0x1070)); // Operators' Name | |
1096 removals.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description | |
1097 removals.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID | |
1098 removals.insert(DicomTag(0x0008, 0x2111)); // Derivation Description | |
1099 removals.insert(DicomTag(0x0010, 0x0010)); // Patient's Name | |
515
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1100 //removals.insert(DicomTag(0x0010, 0x0020)); // Patient ID => cf. below (*) |
311 | 1101 removals.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date |
1102 removals.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time | |
1103 removals.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex | |
1104 removals.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids | |
1105 removals.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names | |
1106 removals.insert(DicomTag(0x0010, 0x1010)); // Patient's Age | |
1107 removals.insert(DicomTag(0x0010, 0x1020)); // Patient's Size | |
1108 removals.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight | |
1109 removals.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator | |
1110 removals.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group | |
1111 removals.insert(DicomTag(0x0010, 0x2180)); // Occupation | |
1112 removals.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History | |
1113 removals.insert(DicomTag(0x0010, 0x4000)); // Patient Comments | |
1114 removals.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number | |
1115 removals.insert(DicomTag(0x0018, 0x1030)); // Protocol Name | |
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1116 //removals.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => cf. below (*) |
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1117 //removals.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => cf. below (*) |
311 | 1118 removals.insert(DicomTag(0x0020, 0x0010)); // Study ID |
1119 removals.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID | |
1120 removals.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID | |
1121 removals.insert(DicomTag(0x0020, 0x4000)); // Image Comments | |
1122 removals.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence | |
1123 removals.insert(DicomTag(0x0040, 0xa124)); // UID | |
1124 removals.insert(DicomTag(0x0040, 0xa730)); // Content Sequence | |
1125 removals.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID | |
1126 removals.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID | |
1127 removals.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID | |
1128 | |
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1129 /** |
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1130 * (*) Patient ID, Study Instance UID and Series Instance UID |
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1131 * are modified by "AnonymizeInstance()" if anonymizing a single |
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1132 * instance, or by "RetrieveMappedUid()" if anonymizing a |
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1133 * patient/study/series. |
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1134 **/ |
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1135 |
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1136 |
311 | 1137 // Some more removals (from the experience of DICOM files at the CHU of Liege) |
1138 removals.insert(DicomTag(0x0010, 0x1040)); // Patient's Address | |
1139 removals.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician | |
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1140 removals.insert(DicomTag(0x0010, 0x2154)); // PatientTelephoneNumbers |
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1141 removals.insert(DicomTag(0x0010, 0x2000)); // Medical Alerts |
311 | 1142 |
1143 // Set the DeidentificationMethod tag | |
1144 replacements.insert(std::make_pair(DicomTag(0x0012, 0x0063), "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1")); | |
1145 | |
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1146 // Set the PatientIdentityRemoved tag |
311 | 1147 replacements.insert(std::make_pair(DicomTag(0x0012, 0x0062), "YES")); |
310 | 1148 } |
1149 | |
1150 | |
1151 static bool ParseModifyRequest(Removals& removals, | |
1152 Replacements& replacements, | |
312 | 1153 bool& removePrivateTags, |
306
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1154 const RestApi::PostCall& call) |
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1155 { |
312 | 1156 removePrivateTags = false; |
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1157 Json::Value request; |
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1158 if (call.ParseJsonRequest(request) && |
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1159 request.isObject()) |
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1160 { |
310 | 1161 Json::Value removalsPart = Json::arrayValue; |
1162 Json::Value replacementsPart = Json::objectValue; | |
304 | 1163 |
306
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1164 if (request.isMember("Remove")) |
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1165 { |
310 | 1166 removalsPart = request["Remove"]; |
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1167 } |
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1168 |
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1169 if (request.isMember("Replace")) |
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1170 { |
310 | 1171 replacementsPart = request["Replace"]; |
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1172 } |
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1173 |
312 | 1174 if (request.isMember("RemovePrivateTags")) |
1175 { | |
1176 removePrivateTags = true; | |
1177 } | |
1178 | |
310 | 1179 ParseRemovals(removals, removalsPart); |
1180 ParseReplacements(replacements, replacementsPart); | |
1181 | |
306
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1182 return true; |
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1183 } |
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1184 else |
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1185 { |
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1186 return false; |
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1187 } |
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1188 } |
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1189 |
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1190 |
311 | 1191 static bool ParseAnonymizationRequest(Removals& removals, |
1192 Replacements& replacements, | |
1193 bool& removePrivateTags, | |
602
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1194 bool& keepPatientId, |
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1195 RestApi::PostCall& call) |
311 | 1196 { |
316
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1197 RETRIEVE_CONTEXT(call); |
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1198 |
311 | 1199 removePrivateTags = true; |
602
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1200 keepPatientId = false; |
311 | 1201 |
1202 Json::Value request; | |
1203 if (call.ParseJsonRequest(request) && | |
1204 request.isObject()) | |
1205 { | |
1206 Json::Value keepPart = Json::arrayValue; | |
312 | 1207 Json::Value removalsPart = Json::arrayValue; |
1208 Json::Value replacementsPart = Json::objectValue; | |
1209 | |
311 | 1210 if (request.isMember("Keep")) |
1211 { | |
1212 keepPart = request["Keep"]; | |
1213 } | |
1214 | |
1215 if (request.isMember("KeepPrivateTags")) | |
1216 { | |
1217 removePrivateTags = false; | |
1218 } | |
1219 | |
312 | 1220 if (request.isMember("Replace")) |
1221 { | |
1222 replacementsPart = request["Replace"]; | |
1223 } | |
1224 | |
311 | 1225 Removals toKeep; |
1226 ParseRemovals(toKeep, keepPart); | |
1227 | |
1228 SetupAnonymization(removals, replacements); | |
1229 | |
1230 for (Removals::iterator it = toKeep.begin(); it != toKeep.end(); it++) | |
1231 { | |
602
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1232 if (*it == DICOM_TAG_PATIENT_ID) |
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1233 { |
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1234 keepPatientId = true; |
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1235 } |
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1236 |
311 | 1237 removals.erase(*it); |
1238 } | |
1239 | |
312 | 1240 Removals additionalRemovals; |
1241 ParseRemovals(additionalRemovals, removalsPart); | |
1242 | |
1243 for (Removals::iterator it = additionalRemovals.begin(); | |
1244 it != additionalRemovals.end(); it++) | |
1245 { | |
321 | 1246 removals.insert(*it); |
312 | 1247 } |
1248 | |
1249 ParseReplacements(replacements, replacementsPart); | |
1250 | |
316
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1251 // Generate random Patient's Name if none is specified |
557 | 1252 if (toKeep.find(DICOM_TAG_PATIENT_NAME) == toKeep.end() && |
1253 replacements.find(DICOM_TAG_PATIENT_NAME) == replacements.end()) | |
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1254 { |
557 | 1255 replacements.insert(std::make_pair(DICOM_TAG_PATIENT_NAME, GeneratePatientName(context))); |
316
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1256 } |
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1257 |
311 | 1258 return true; |
1259 } | |
1260 else | |
1261 { | |
1262 return false; | |
1263 } | |
1264 } | |
1265 | |
1266 | |
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1267 static void AnonymizeOrModifyInstance(Removals& removals, |
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1268 Replacements& replacements, |
314 | 1269 bool removePrivateTags, |
1270 RestApi::PostCall& call) | |
302
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1271 { |
315 | 1272 boost::mutex::scoped_lock lock(cacheMutex_); |
302
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1273 RETRIEVE_CONTEXT(call); |
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1274 |
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1275 std::string id = call.GetUriComponent("id", ""); |
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1276 ParsedDicomFile& dicom = context.GetDicomFile(id); |
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1277 |
314 | 1278 std::auto_ptr<ParsedDicomFile> modified(dicom.Clone()); |
1279 ReplaceInstanceInternal(*modified, removals, replacements, DicomReplaceMode_InsertIfAbsent, removePrivateTags); | |
1280 modified->Answer(call.GetOutput()); | |
1281 } | |
1282 | |
1283 | |
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1284 static bool RetrieveMappedUid(ParsedDicomFile& dicom, |
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1285 DicomRootLevel level, |
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1286 Replacements& replacements, |
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1287 UidMap& uidMap) |
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1288 { |
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1289 std::auto_ptr<DicomTag> tag; |
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1290 |
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1291 switch (level) |
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1292 { |
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1293 case DicomRootLevel_Series: |
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1294 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID)); |
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1295 break; |
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1296 |
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1297 case DicomRootLevel_Study: |
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1298 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID)); |
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1299 break; |
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1300 |
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1301 case DicomRootLevel_Patient: |
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1302 tag.reset(new DicomTag(DICOM_TAG_PATIENT_ID)); |
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1303 break; |
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1304 |
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1305 default: |
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1306 throw OrthancException(ErrorCode_InternalError); |
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1307 } |
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1308 |
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1309 std::string original; |
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1310 if (!dicom.GetTagValue(original, *tag)) |
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1311 { |
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1312 throw OrthancException(ErrorCode_InternalError); |
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1313 } |
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1314 |
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1315 std::string mapped; |
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1316 bool isNew; |
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1317 |
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1318 UidMap::const_iterator previous = uidMap.find(std::make_pair(level, original)); |
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1319 if (previous == uidMap.end()) |
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1320 { |
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1321 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level); |
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1322 uidMap.insert(std::make_pair(std::make_pair(level, original), mapped)); |
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1323 isNew = true; |
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1324 } |
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1325 else |
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1326 { |
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1327 mapped = previous->second; |
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1328 isNew = false; |
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1329 } |
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1330 |
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1331 replacements[*tag] = mapped; |
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1332 return isNew; |
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1333 } |
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1334 |
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1335 |
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1336 static void AnonymizeOrModifyResource(Removals& removals, |
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1337 Replacements& replacements, |
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1338 bool removePrivateTags, |
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1339 bool keepPatientId, |
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1340 MetadataType metadataType, |
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1341 ChangeType changeType, |
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1342 ResourceType resourceType, |
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1343 RestApi::PostCall& call) |
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1344 { |
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1345 typedef std::list<std::string> Instances; |
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1346 |
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1347 bool isFirst = true; |
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1348 Json::Value result(Json::objectValue); |
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1349 |
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1350 boost::mutex::scoped_lock lock(cacheMutex_); |
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1351 RETRIEVE_CONTEXT(call); |
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1352 |
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1353 Instances instances; |
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1354 std::string id = call.GetUriComponent("id", ""); |
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1355 context.GetIndex().GetChildInstances(instances, id); |
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1356 |
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1357 if (instances.size() == 0) |
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1358 { |
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1359 return; |
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1360 } |
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1361 |
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1362 |
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1363 /** |
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1364 * Loop over all the instances of the resource. |
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1365 **/ |
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1366 |
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1367 UidMap uidMap; |
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1368 for (Instances::const_iterator it = instances.begin(); |
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1369 it != instances.end(); it++) |
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1370 { |
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1371 LOG(INFO) << "Modifying instance " << *it; |
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1372 ParsedDicomFile& original = context.GetDicomFile(*it); |
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1373 |
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1374 DicomInstanceHasher originalHasher = original.GetHasher(); |
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1375 |
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1376 if (isFirst && keepPatientId) |
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1377 { |
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1378 std::string patientId = originalHasher.GetPatientId(); |
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1379 uidMap[std::make_pair(DicomRootLevel_Patient, patientId)] = patientId; |
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1380 } |
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1381 |
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1382 bool isNewSeries = RetrieveMappedUid(original, DicomRootLevel_Series, replacements, uidMap); |
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1383 bool isNewStudy = RetrieveMappedUid(original, DicomRootLevel_Study, replacements, uidMap); |
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1384 bool isNewPatient = RetrieveMappedUid(original, DicomRootLevel_Patient, replacements, uidMap); |
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1385 |
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1386 |
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1387 /** |
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1388 * Compute the resulting DICOM instance and store it into the Orthanc store. |
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1389 **/ |
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1390 |
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1391 std::auto_ptr<ParsedDicomFile> modified(original.Clone()); |
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1392 ReplaceInstanceInternal(*modified, removals, replacements, DicomReplaceMode_InsertIfAbsent, removePrivateTags); |
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1393 |
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1394 std::string modifiedInstance; |
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1395 if (context.Store(modifiedInstance, modified->GetDicom()) != StoreStatus_Success) |
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1396 { |
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1397 LOG(ERROR) << "Error while storing a modified instance " << *it; |
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1398 return; |
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|
1399 } |
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1400 |
349
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1401 |
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|
1402 /** |
443
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diff
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|
1403 * Record metadata information (AnonymizedFrom/ModifiedFrom). |
349
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1404 **/ |
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1405 |
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1406 DicomInstanceHasher modifiedHasher = modified->GetHasher(); |
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1407 |
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1408 if (isNewSeries) |
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1409 { |
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1410 context.GetIndex().SetMetadata(modifiedHasher.HashSeries(), |
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1411 metadataType, originalHasher.HashSeries()); |
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1412 } |
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|
1413 |
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1414 if (isNewStudy) |
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|
1415 { |
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|
1416 context.GetIndex().SetMetadata(modifiedHasher.HashStudy(), |
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1417 metadataType, originalHasher.HashStudy()); |
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1418 } |
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|
1419 |
515
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|
1420 if (isNewPatient) |
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1421 { |
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1422 context.GetIndex().SetMetadata(modifiedHasher.HashPatient(), |
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|
1423 metadataType, originalHasher.HashPatient()); |
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1424 } |
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|
1425 |
349
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|
1426 assert(*it == originalHasher.HashInstance()); |
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1427 assert(modifiedInstance == modifiedHasher.HashInstance()); |
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1428 context.GetIndex().SetMetadata(modifiedInstance, metadataType, *it); |
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|
1429 |
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changeset
|
1430 |
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|
1431 /** |
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1432 * Compute the JSON object that is returned by the REST call. |
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1433 **/ |
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1434 |
348
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1435 if (isFirst) |
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1436 { |
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|
1437 std::string newId; |
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1438 |
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1439 switch (resourceType) |
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1440 { |
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1441 case ResourceType_Series: |
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1442 newId = modifiedHasher.HashSeries(); |
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1443 break; |
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|
1444 |
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1445 case ResourceType_Study: |
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1446 newId = modifiedHasher.HashStudy(); |
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1447 break; |
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|
1448 |
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1449 case ResourceType_Patient: |
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1450 newId = modifiedHasher.HashPatient(); |
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1451 break; |
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|
1452 |
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|
1453 default: |
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1454 throw OrthancException(ErrorCode_InternalError); |
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1455 } |
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|
1456 |
434
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EnumerationDictionary
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diff
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|
1457 result["Type"] = EnumerationToString(resourceType); |
349
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1458 result["ID"] = newId; |
348
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1459 result["Path"] = GetBasePath(resourceType, newId); |
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1460 result["PatientID"] = modifiedHasher.HashPatient(); |
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1461 isFirst = false; |
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|
1462 } |
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|
1463 } |
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|
1464 |
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|
1465 call.GetOutput().AnswerJson(result); |
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1466 } |
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|
1467 |
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|
1468 |
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|
1469 |
314 | 1470 static void ModifyInstance(RestApi::PostCall& call) |
1471 { | |
310 | 1472 Removals removals; |
1473 Replacements replacements; | |
312 | 1474 bool removePrivateTags; |
310 | 1475 |
312 | 1476 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
304 | 1477 { |
314 | 1478 AnonymizeOrModifyInstance(removals, replacements, removePrivateTags, call); |
304 | 1479 } |
306
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1480 } |
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|
1481 |
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1482 |
311 | 1483 static void AnonymizeInstance(RestApi::PostCall& call) |
1484 { | |
1485 Removals removals; | |
1486 Replacements replacements; | |
602
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1487 bool removePrivateTags, keepPatientId; |
311 | 1488 |
602
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|
1489 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, keepPatientId, call)) |
311 | 1490 { |
602
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|
1491 // TODO Handle "keepPatientId" |
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1492 |
515
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|
1493 // Generate random patient ID if not specified |
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1494 if (replacements.find(DICOM_TAG_PATIENT_ID) == replacements.end()) |
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1495 { |
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1496 replacements.insert(std::make_pair(DICOM_TAG_PATIENT_ID, |
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|
1497 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Patient))); |
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1498 } |
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1499 |
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|
1500 // Generate random study UID if not specified |
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1501 if (replacements.find(DICOM_TAG_STUDY_INSTANCE_UID) == replacements.end()) |
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1502 { |
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1503 replacements.insert(std::make_pair(DICOM_TAG_STUDY_INSTANCE_UID, |
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|
1504 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Study))); |
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1505 } |
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1506 |
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1507 // Generate random series UID if not specified |
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1508 if (replacements.find(DICOM_TAG_SERIES_INSTANCE_UID) == replacements.end()) |
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1509 { |
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1510 replacements.insert(std::make_pair(DICOM_TAG_SERIES_INSTANCE_UID, |
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1511 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Series))); |
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1512 } |
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1513 |
314 | 1514 AnonymizeOrModifyInstance(removals, replacements, removePrivateTags, call); |
311 | 1515 } |
1516 } | |
1517 | |
1518 | |
308
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1519 static void ModifySeriesInplace(RestApi::PostCall& call) |
306
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1520 { |
310 | 1521 Removals removals; |
1522 Replacements replacements; | |
312 | 1523 bool removePrivateTags; |
308
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1524 |
312 | 1525 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
308
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1526 { |
602
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1527 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, true /*keepPatientId*/, |
349
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1528 MetadataType_ModifiedFrom, ChangeType_ModifiedSeries, |
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1529 ResourceType_Series, call); |
316
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1530 } |
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1531 } |
315 | 1532 |
308
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1533 |
316
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|
1534 static void AnonymizeSeriesInplace(RestApi::PostCall& call) |
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diff
changeset
|
1535 { |
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diff
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|
1536 Removals removals; |
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diff
changeset
|
1537 Replacements replacements; |
602
d5043ff68d58
Possibility to keep the PatientID during an anonymization
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diff
changeset
|
1538 bool removePrivateTags, keepPatientId; |
308
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|
1539 |
602
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Possibility to keep the PatientID during an anonymization
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diff
changeset
|
1540 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, keepPatientId, call)) |
316
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|
1541 { |
602
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diff
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|
1542 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, keepPatientId, |
349
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diff
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|
1543 MetadataType_AnonymizedFrom, ChangeType_AnonymizedSeries, |
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diff
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|
1544 ResourceType_Series, call); |
308
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1545 } |
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|
1546 } |
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diff
changeset
|
1547 |
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diff
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|
1548 |
316
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|
1549 static void ModifyStudyInplace(RestApi::PostCall& call) |
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diff
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|
1550 { |
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diff
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|
1551 Removals removals; |
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diff
changeset
|
1552 Replacements replacements; |
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diff
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|
1553 bool removePrivateTags; |
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|
1554 |
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|
1555 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) |
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|
1556 { |
602
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diff
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|
1557 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, true /*keepPatientId*/, |
349
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diff
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|
1558 MetadataType_ModifiedFrom, ChangeType_ModifiedStudy, |
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diff
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|
1559 ResourceType_Study, call); |
316
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|
1560 } |
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|
1561 } |
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changeset
|
1562 |
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changeset
|
1563 |
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|
1564 static void AnonymizeStudyInplace(RestApi::PostCall& call) |
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diff
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|
1565 { |
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changeset
|
1566 Removals removals; |
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diff
changeset
|
1567 Replacements replacements; |
602
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diff
changeset
|
1568 bool removePrivateTags, keepPatientId; |
316
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|
1569 |
602
d5043ff68d58
Possibility to keep the PatientID during an anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1570 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, keepPatientId, call)) |
316
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diff
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|
1571 { |
602
d5043ff68d58
Possibility to keep the PatientID during an anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1572 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, keepPatientId, |
349
c5edf0cc6e95
switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1573 MetadataType_AnonymizedFrom, ChangeType_AnonymizedStudy, |
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|
1574 ResourceType_Study, call); |
316
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|
1575 } |
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changeset
|
1576 } |
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|
1577 |
308
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|
1578 |
515
a8be42bcf2bb
Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
499
diff
changeset
|
1579 /*static void ModifyPatientInplace(RestApi::PostCall& call) |
351 | 1580 { |
1581 Removals removals; | |
1582 Replacements replacements; | |
1583 bool removePrivateTags; | |
1584 | |
1585 if (ParseModifyRequest(removals, replacements, removePrivateTags, call)) | |
1586 { | |
515
a8be42bcf2bb
Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
499
diff
changeset
|
1587 AnonymizeOrModifyResource(false, removals, replacements, removePrivateTags, |
351 | 1588 MetadataType_ModifiedFrom, ChangeType_ModifiedPatient, |
1589 ResourceType_Patient, call); | |
1590 } | |
515
a8be42bcf2bb
Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
499
diff
changeset
|
1591 }*/ |
351 | 1592 |
1593 | |
1594 static void AnonymizePatientInplace(RestApi::PostCall& call) | |
1595 { | |
1596 Removals removals; | |
1597 Replacements replacements; | |
602
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Possibility to keep the PatientID during an anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1598 bool removePrivateTags, keepPatientId; |
351 | 1599 |
602
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1600 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, keepPatientId, call)) |
351 | 1601 { |
602
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diff
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|
1602 AnonymizeOrModifyResource(removals, replacements, removePrivateTags, keepPatientId, |
351 | 1603 MetadataType_AnonymizedFrom, ChangeType_AnonymizedPatient, |
1604 ResourceType_Patient, call); | |
1605 } | |
1606 } | |
1607 | |
1608 | |
436
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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434
diff
changeset
|
1609 // Handling of metadata ----------------------------------------------------- |
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diff
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|
1610 |
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diff
changeset
|
1611 static void ListMetadata(RestApi::GetCall& call) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1612 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1613 RETRIEVE_CONTEXT(call); |
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diff
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|
1614 |
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diff
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|
1615 std::string publicId = call.GetUriComponent("id", ""); |
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read access to metadata
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parents:
434
diff
changeset
|
1616 std::list<MetadataType> metadata; |
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read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1617 if (context.GetIndex().ListAvailableMetadata(metadata, publicId)) |
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read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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434
diff
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|
1618 { |
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read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
434
diff
changeset
|
1619 Json::Value result = Json::arrayValue; |
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read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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434
diff
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|
1620 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1621 for (std::list<MetadataType>::const_iterator |
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read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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434
diff
changeset
|
1622 it = metadata.begin(); it != metadata.end(); it++) |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1623 { |
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read access to metadata
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parents:
434
diff
changeset
|
1624 result.append(EnumerationToString(*it)); |
d51186bf7602
read access to metadata
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diff
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|
1625 } |
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434
diff
changeset
|
1626 |
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read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1627 call.GetOutput().AnswerJson(result); |
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read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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434
diff
changeset
|
1628 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1629 } |
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434
diff
changeset
|
1630 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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434
diff
changeset
|
1631 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1632 static void GetMetadata(RestApi::GetCall& call) |
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diff
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|
1633 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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434
diff
changeset
|
1634 RETRIEVE_CONTEXT(call); |
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diff
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|
1635 |
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diff
changeset
|
1636 std::string publicId = call.GetUriComponent("id", ""); |
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read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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434
diff
changeset
|
1637 std::string name = call.GetUriComponent("name", ""); |
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read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1638 MetadataType metadata = StringToMetadata(name); |
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read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1639 |
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diff
changeset
|
1640 std::string value; |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1641 if (context.GetIndex().LookupMetadata(value, publicId, metadata)) |
d51186bf7602
read access to metadata
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diff
changeset
|
1642 { |
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diff
changeset
|
1643 call.GetOutput().AnswerBuffer(value, "text/plain"); |
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diff
changeset
|
1644 } |
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diff
changeset
|
1645 } |
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diff
changeset
|
1646 |
285
4031f73fe0e4
access to the raw dicom tags
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diff
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|
1647 |
438 | 1648 static void DeleteMetadata(RestApi::DeleteCall& call) |
1649 { | |
1650 RETRIEVE_CONTEXT(call); | |
1651 | |
1652 std::string publicId = call.GetUriComponent("id", ""); | |
1653 std::string name = call.GetUriComponent("name", ""); | |
1654 MetadataType metadata = StringToMetadata(name); | |
1655 | |
1656 if (metadata >= MetadataType_StartUser && | |
1657 metadata <= MetadataType_EndUser) | |
1658 { | |
1659 // It is forbidden to modify internal metadata | |
1660 context.GetIndex().DeleteMetadata(publicId, metadata); | |
1661 call.GetOutput().AnswerBuffer("", "text/plain"); | |
1662 } | |
1663 } | |
1664 | |
1665 | |
437 | 1666 static void SetMetadata(RestApi::PutCall& call) |
1667 { | |
1668 RETRIEVE_CONTEXT(call); | |
1669 | |
1670 std::string publicId = call.GetUriComponent("id", ""); | |
1671 std::string name = call.GetUriComponent("name", ""); | |
1672 MetadataType metadata = StringToMetadata(name); | |
1673 std::string value = call.GetPutBody(); | |
1674 | |
1675 if (metadata >= MetadataType_StartUser && | |
1676 metadata <= MetadataType_EndUser) | |
1677 { | |
1678 // It is forbidden to modify internal metadata | |
1679 context.GetIndex().SetMetadata(publicId, metadata, value); | |
1680 call.GetOutput().AnswerBuffer("", "text/plain"); | |
1681 } | |
1682 } | |
1683 | |
1684 | |
440
23e5b35e3c5c
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diff
changeset
|
1685 static void GetResourceStatistics(RestApi::GetCall& call) |
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diff
changeset
|
1686 { |
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diff
changeset
|
1687 RETRIEVE_CONTEXT(call); |
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diff
changeset
|
1688 std::string publicId = call.GetUriComponent("id", ""); |
23e5b35e3c5c
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diff
changeset
|
1689 Json::Value result; |
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diff
changeset
|
1690 context.GetIndex().GetStatistics(result, publicId); |
23e5b35e3c5c
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diff
changeset
|
1691 call.GetOutput().AnswerJson(result); |
23e5b35e3c5c
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diff
changeset
|
1692 } |
23e5b35e3c5c
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diff
changeset
|
1693 |
23e5b35e3c5c
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438
diff
changeset
|
1694 |
437 | 1695 |
484
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preparation for handling Orthanc peers
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diff
changeset
|
1696 // Orthanc Peers ------------------------------------------------------------ |
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diff
changeset
|
1697 |
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diff
changeset
|
1698 static bool IsExistingPeer(const OrthancRestApi::SetOfStrings& peers, |
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changeset
|
1699 const std::string& id) |
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changeset
|
1700 { |
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diff
changeset
|
1701 return peers.find(id) != peers.end(); |
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changeset
|
1702 } |
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1703 |
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1704 static void ListPeers(RestApi::GetCall& call) |
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1705 { |
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|
1706 RETRIEVE_PEERS(call); |
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1707 |
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1708 Json::Value result = Json::arrayValue; |
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|
1709 for (OrthancRestApi::SetOfStrings::const_iterator |
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1710 it = peers.begin(); it != peers.end(); it++) |
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1711 { |
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|
1712 result.append(*it); |
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1713 } |
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|
1714 |
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1715 call.GetOutput().AnswerJson(result); |
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1716 } |
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1717 |
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1718 static void ListPeerOperations(RestApi::GetCall& call) |
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1719 { |
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|
1720 RETRIEVE_PEERS(call); |
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1721 |
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|
1722 std::string id = call.GetUriComponent("id", ""); |
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1723 if (IsExistingPeer(peers, id)) |
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1724 { |
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1725 Json::Value result = Json::arrayValue; |
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1726 result.append("store"); |
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1727 call.GetOutput().AnswerJson(result); |
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1728 } |
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|
1729 } |
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1730 |
485
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|
1731 static void PeerStore(RestApi::PostCall& call) |
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1732 { |
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1733 RETRIEVE_CONTEXT(call); |
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1734 |
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1735 std::string remote = call.GetUriComponent("id", ""); |
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1736 |
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1737 std::list<std::string> instances; |
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1738 if (!GetInstancesToExport(instances, remote, call)) |
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1739 { |
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1740 return; |
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1741 } |
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|
1742 |
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1743 std::string url, username, password; |
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1744 GetOrthancPeer(remote, url, username, password); |
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1745 |
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1746 // Configure the HTTP client |
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1747 HttpClient client; |
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1748 if (username.size() != 0 && password.size() != 0) |
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1749 { |
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1750 client.SetCredentials(username.c_str(), password.c_str()); |
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1751 } |
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1752 |
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1753 client.SetUrl(url + "instances"); |
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1754 client.SetMethod(HttpMethod_Post); |
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1755 |
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1756 // Loop over the instances that are to be sent |
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1757 for (std::list<std::string>::const_iterator |
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1758 it = instances.begin(); it != instances.end(); it++) |
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1759 { |
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1760 LOG(INFO) << "Sending resource " << *it << " to peer \"" << remote << "\""; |
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1761 |
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1762 context.ReadFile(client.AccessPostData(), *it, FileContentType_Dicom); |
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1763 |
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1764 std::string answer; |
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1765 if (!client.Apply(answer)) |
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1766 { |
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1767 LOG(ERROR) << "Unable to send resource " << *it << " to peer \"" << remote << "\""; |
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1768 return; |
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1769 } |
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1770 } |
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1771 |
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1772 call.GetOutput().AnswerBuffer("{}", "application/json"); |
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1773 } |
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1774 |
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1775 |
484
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1776 |
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|
1777 |
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1778 |
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1779 // Registration of the various REST handlers -------------------------------- |
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1780 |
230 | 1781 OrthancRestApi::OrthancRestApi(ServerContext& context) : |
224
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1782 context_(context) |
210
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1783 { |
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|
1784 GetListOfDicomModalities(modalities_); |
484
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|
1785 GetListOfOrthancPeers(peers_); |
210
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1786 |
211 | 1787 Register("/", ServeRoot); |
210
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1788 Register("/system", GetSystemInformation); |
238 | 1789 Register("/statistics", GetStatistics); |
210
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1790 Register("/changes", GetChanges); |
413
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|
1791 Register("/changes", DeleteChanges); |
237
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1792 Register("/exports", GetExports); |
413
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1793 Register("/exports", DeleteExports); |
211 | 1794 |
216
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1795 Register("/instances", UploadDicomFile); |
211 | 1796 Register("/instances", ListResources<ResourceType_Instance>); |
1797 Register("/patients", ListResources<ResourceType_Patient>); | |
1798 Register("/series", ListResources<ResourceType_Series>); | |
1799 Register("/studies", ListResources<ResourceType_Study>); | |
212 | 1800 |
1801 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>); | |
1802 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>); | |
1803 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>); | |
1804 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>); | |
1805 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>); | |
1806 Register("/series/{id}", GetSingleResource<ResourceType_Series>); | |
1807 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>); | |
1808 Register("/studies/{id}", GetSingleResource<ResourceType_Study>); | |
250
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1809 |
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1810 Register("/patients/{id}/archive", GetArchive<ResourceType_Patient>); |
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1811 Register("/studies/{id}/archive", GetArchive<ResourceType_Study>); |
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1812 Register("/series/{id}/archive", GetArchive<ResourceType_Series>); |
213
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1813 |
440
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|
1814 Register("/instances/{id}/statistics", GetResourceStatistics); |
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1815 Register("/patients/{id}/statistics", GetResourceStatistics); |
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1816 Register("/studies/{id}/statistics", GetResourceStatistics); |
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1817 Register("/series/{id}/statistics", GetResourceStatistics); |
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1818 |
437 | 1819 Register("/instances/{id}/metadata", ListMetadata); |
438 | 1820 Register("/instances/{id}/metadata/{name}", DeleteMetadata); |
437 | 1821 Register("/instances/{id}/metadata/{name}", GetMetadata); |
1822 Register("/instances/{id}/metadata/{name}", SetMetadata); | |
1823 Register("/patients/{id}/metadata", ListMetadata); | |
438 | 1824 Register("/patients/{id}/metadata/{name}", DeleteMetadata); |
437 | 1825 Register("/patients/{id}/metadata/{name}", GetMetadata); |
1826 Register("/patients/{id}/metadata/{name}", SetMetadata); | |
1827 Register("/series/{id}/metadata", ListMetadata); | |
438 | 1828 Register("/series/{id}/metadata/{name}", DeleteMetadata); |
437 | 1829 Register("/series/{id}/metadata/{name}", GetMetadata); |
1830 Register("/series/{id}/metadata/{name}", SetMetadata); | |
1831 Register("/studies/{id}/metadata", ListMetadata); | |
438 | 1832 Register("/studies/{id}/metadata/{name}", DeleteMetadata); |
437 | 1833 Register("/studies/{id}/metadata/{name}", GetMetadata); |
1834 Register("/studies/{id}/metadata/{name}", SetMetadata); | |
436
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1835 |
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1836 Register("/patients/{id}/protected", IsProtectedPatient); |
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1837 Register("/patients/{id}/protected", SetPatientProtection); |
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1838 Register("/instances/{id}/file", GetInstanceFile); |
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|
1839 Register("/instances/{id}/export", ExportInstanceFile); |
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1840 Register("/instances/{id}/tags", GetInstanceTags<false>); |
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1841 Register("/instances/{id}/simplified-tags", GetInstanceTags<true>); |
214 | 1842 Register("/instances/{id}/frames", ListFrames); |
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1843 Register("/instances/{id}/content/*", GetRawContent); |
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1844 |
215
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1845 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>); |
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1846 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
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1847 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
465
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1848 Register("/instances/{id}/frames/{frame}/image-int16", GetImage<ImageExtractionMode_Int16>); |
215
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1849 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>); |
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1850 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
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1851 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
465
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1852 Register("/instances/{id}/image-int16", GetImage<ImageExtractionMode_Int16>); |
215
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1853 |
227
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dicom-scu from rest
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1854 Register("/modalities", ListModalities); |
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1855 Register("/modalities/{id}", ListModalityOperations); |
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1856 Register("/modalities/{id}/find-patient", DicomFindPatient); |
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1857 Register("/modalities/{id}/find-study", DicomFindStudy); |
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1858 Register("/modalities/{id}/find-series", DicomFindSeries); |
499
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instance-level find scu
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1859 Register("/modalities/{id}/find-instance", DicomFindInstance); |
227
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1860 Register("/modalities/{id}/find", DicomFind); |
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1861 Register("/modalities/{id}/store", DicomStore); |
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1862 |
484
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preparation for handling Orthanc peers
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1863 Register("/peers", ListPeers); |
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1864 Register("/peers/{id}", ListPeerOperations); |
485
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send resources through HTTP
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1865 Register("/peers/{id}/store", PeerStore); |
484
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1866 |
304 | 1867 Register("/instances/{id}/modify", ModifyInstance); |
308
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1868 Register("/series/{id}/modify", ModifySeriesInplace); |
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1869 Register("/studies/{id}/modify", ModifyStudyInplace); |
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Link from modified to original resource in Orthanc Explorer
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1870 //Register("/patients/{id}/modify", ModifyPatientInplace); |
311 | 1871 |
1872 Register("/instances/{id}/anonymize", AnonymizeInstance); | |
316
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1873 Register("/series/{id}/anonymize", AnonymizeSeriesInplace); |
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1874 Register("/studies/{id}/anonymize", AnonymizeStudyInplace); |
351 | 1875 Register("/patients/{id}/anonymize", AnonymizePatientInplace); |
342
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generation of random uid in the rest api
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1876 |
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1877 Register("/tools/generate-uid", GenerateUid); |
418
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execution of lua through REST
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1878 Register("/tools/execute-script", ExecuteScript); |
446 | 1879 Register("/tools/now", GetNowIsoString); |
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1880 } |
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1881 } |