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annotate OrthancServer/Sources/ServerJobs/MergeStudyJob.cpp @ 4721:cf4a80a7e1a2

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 24 Jun 2021 09:16:03 +0200
parents fb98db281d1d
children 783f8a048035 94616af363ec
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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34 #include "MergeStudyJob.h"
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35
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36 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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37 #include "../../../OrthancFramework/Sources/Logging.h"
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38 #include "../../../OrthancFramework/Sources/SerializationToolbox.h"
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39 #include "../OrthancConfiguration.h"
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40 #include "../ServerContext.h"
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42
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43 namespace Orthanc
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44 {
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45 static void RegisterSeries(std::map<std::string, std::string>& target,
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46 const std::string& series)
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47 {
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48 // Generate a target SeriesInstanceUID for this series
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49 if (target.find(series) == target.end())
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50 {
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51 target[series] = FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series);
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52 }
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53 }
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56 void MergeStudyJob::AddSourceSeriesInternal(const std::string& series)
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57 {
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58 RegisterSeries(seriesUidMap_, series);
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59
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60 // Add all the instances of the series as to be processed
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61 std::list<std::string> instances;
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62 GetContext().GetIndex().GetChildren(instances, series);
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63
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64 for (std::list<std::string>::const_iterator
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65 it = instances.begin(); it != instances.end(); ++it)
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66 {
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67 AddInstance(*it);
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68 }
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69 }
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70
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71
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72 void MergeStudyJob::AddSourceStudyInternal(const std::string& study)
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73 {
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74 if (study == targetStudy_)
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75 {
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76 throw OrthancException(ErrorCode_UnknownResource,
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77 "Cannot merge a study into the same study: " + study);
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78 }
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79 else
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80 {
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81 std::list<std::string> series;
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82 GetContext().GetIndex().GetChildren(series, study);
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83
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84 for (std::list<std::string>::const_iterator
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85 it = series.begin(); it != series.end(); ++it)
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86 {
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87 AddSourceSeriesInternal(*it);
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88 }
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89 }
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90 }
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91
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92
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93 bool MergeStudyJob::HandleInstance(const std::string& instance)
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94 {
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95 if (!HasTrailingStep())
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96 {
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97 throw OrthancException(ErrorCode_BadSequenceOfCalls,
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98 "AddTrailingStep() should have been called after AddSourceXXX()");
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99 }
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100
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101 /**
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102 * Retrieve the DICOM instance to be modified
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103 **/
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104
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105 std::unique_ptr<ParsedDicomFile> modified;
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106
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107 try
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108 {
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109 ServerContext::DicomCacheLocker locker(GetContext(), instance);
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110 modified.reset(locker.GetDicom().Clone(true));
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111 }
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112 catch (OrthancException&)
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113 {
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114 LOG(WARNING) << "An instance was removed after the job was issued: " << instance;
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115 return false;
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116 }
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117
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119 /**
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120 * Chose the target UIDs
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121 **/
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122
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123 std::string series = modified->GetHasher().HashSeries();
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124
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125 SeriesUidMap::const_iterator targetSeriesUid = seriesUidMap_.find(series);
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126
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127 if (targetSeriesUid == seriesUidMap_.end())
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128 {
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129 throw OrthancException(ErrorCode_BadFileFormat); // Should never happen
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130 }
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131
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132
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133 /**
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134 * Copy the tags from the "Patient Module Attributes" and "General
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135 * Study Module Attributes" modules of the target study
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136 **/
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137
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138 for (std::set<DicomTag>::const_iterator it = removals_.begin();
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139 it != removals_.end(); ++it)
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140 {
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141 modified->Remove(*it);
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142 }
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143
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144 for (Replacements::const_iterator it = replacements_.begin();
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145 it != replacements_.end(); ++it)
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146 {
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147 modified->ReplacePlainString(it->first, it->second);
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148 }
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149
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150
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151 /**
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152 * Store the new instance into Orthanc
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153 **/
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154
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155 modified->ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, targetSeriesUid->second);
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156
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157 // Fix since Orthanc 1.5.8: Assign new "SOPInstanceUID", as the instance has been modified
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158 modified->ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
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159
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160 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*modified));
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161 toStore->SetOrigin(origin_);
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162
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163 std::string modifiedInstance;
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164 if (GetContext().Store(modifiedInstance, *toStore,
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165 StoreInstanceMode_Default) != StoreStatus_Success)
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166 {
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167 LOG(ERROR) << "Error while storing a modified instance " << instance;
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168 return false;
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169 }
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170
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171 return true;
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172 }
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173
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174
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175 MergeStudyJob::MergeStudyJob(ServerContext& context,
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176 const std::string& targetStudy) :
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177 CleaningInstancesJob(context, false /* by default, remove source instances */),
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178 targetStudy_(targetStudy)
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179 {
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180 /**
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181 * Check the validity of the input ID
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182 **/
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183
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184 ResourceType type;
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185
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186 if (!GetContext().GetIndex().LookupResourceType(type, targetStudy) ||
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187 type != ResourceType_Study)
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188 {
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189 throw OrthancException(ErrorCode_UnknownResource,
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190 "Cannot merge into an unknown study: " + targetStudy);
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191 }
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192
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193
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194 /**
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195 * Detect the tags to be removed/replaced by parsing one child
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196 * instance of the study
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197 **/
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198
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199 DicomTag::AddTagsForModule(removals_, DicomModule_Patient);
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200 DicomTag::AddTagsForModule(removals_, DicomModule_Study);
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201
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202 std::list<std::string> instances;
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203 GetContext().GetIndex().GetChildInstances(instances, targetStudy);
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204
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205 if (instances.empty())
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206 {
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207 throw OrthancException(ErrorCode_UnknownResource);
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208 }
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209
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210 DicomMap dicom;
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211
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212 {
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213 ServerContext::DicomCacheLocker locker(GetContext(), instances.front());
4140
0ddc5297a8ab centralization of default parameters for JSON/DicomMap conversions from DCMTK
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diff changeset
214 OrthancConfiguration::DefaultExtractDicomSummary(dicom, locker.GetDicom());
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215 }
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216
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217 const std::set<DicomTag> moduleTags = removals_;
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218 for (std::set<DicomTag>::const_iterator it = moduleTags.begin();
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219 it != moduleTags.end(); ++it)
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220 {
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221 const DicomValue* value = dicom.TestAndGetValue(*it);
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diff changeset
222 std::string str;
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223
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224 if (value != NULL &&
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diff changeset
225 value->CopyToString(str, false))
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226 {
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227 removals_.erase(*it);
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diff changeset
228 replacements_.insert(std::make_pair(*it, str));
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diff changeset
229 }
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diff changeset
230 }
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diff changeset
231 }
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232
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233
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diff changeset
234 void MergeStudyJob::SetOrigin(const DicomInstanceOrigin& origin)
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235 {
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diff changeset
236 if (IsStarted())
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237 {
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238 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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239 }
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diff changeset
240 else
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241 {
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diff changeset
242 origin_ = origin;
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243 }
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diff changeset
244 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
245
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
246
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247 void MergeStudyJob::SetOrigin(const RestApiCall& call)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
248 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
249 SetOrigin(DicomInstanceOrigin::FromRest(call));
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
250 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
252
4715
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
253 void MergeStudyJob::AddSource(const std::string& publicId)
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
254 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
255 ResourceType level;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260 }
4715
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
261 else if (!GetContext().GetIndex().LookupResourceType(level, publicId))
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262 {
2955
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diff changeset
263 throw OrthancException(ErrorCode_UnknownResource,
4715
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
264 "Cannot find this resource: " + publicId);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 switch (level)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 case ResourceType_Study:
4715
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diff changeset
271 AddSourceStudyInternal(publicId);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
274 case ResourceType_Series:
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diff changeset
275 AddSourceSeries(publicId);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
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diff changeset
276 break;
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
277
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
278 case ResourceType_Instance:
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
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diff changeset
279 AddSourceInstance(publicId);
2853
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parents:
diff changeset
280 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282 default:
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diff changeset
283 throw OrthancException(ErrorCode_UnknownResource,
4715
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
284 "This resource is neither a study, nor a series, nor an instance: " +
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
285 publicId + " is a " + std::string(EnumerationToString(level)));
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
289
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291 void MergeStudyJob::AddSourceSeries(const std::string& series)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
292 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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diff changeset
293 std::string parent;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
294
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
295 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
296 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
297 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
298 }
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
299 else if (!GetContext().GetIndex().LookupParent(parent, series, ResourceType_Study))
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
300 {
2955
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parents: 2860
diff changeset
301 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
302 "This resource is not a series: " + series);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304 else if (parent == targetStudy_)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
305 {
2955
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parents: 2860
diff changeset
306 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
307 "Cannot merge series " + series +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
308 " into its parent study " + targetStudy_);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 AddSourceSeriesInternal(series);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 void MergeStudyJob::AddSourceStudy(const std::string& study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
319 ResourceType actualLevel;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 }
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
325 else if (!GetContext().GetIndex().LookupResourceType(actualLevel, study) ||
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 actualLevel != ResourceType_Study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
328 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
329 "This resource is not a study: " + study);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333 AddSourceStudyInternal(study);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
337
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
338 void MergeStudyJob::AddSourceInstance(const std::string& instance)
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
339 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
340 std::string parentStudy, parentSeries;
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
341
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
342 if (IsStarted())
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
343 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
344 throw OrthancException(ErrorCode_BadSequenceOfCalls);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
345 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
346 else if (!GetContext().GetIndex().LookupParent(parentSeries, instance, ResourceType_Series) ||
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
347 !GetContext().GetIndex().LookupParent(parentStudy, parentSeries, ResourceType_Study))
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
348 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
349 throw OrthancException(ErrorCode_UnknownResource,
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
350 "This resource is not an instance: " + instance);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
351 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
352 else if (parentStudy == targetStudy_)
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
353 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
354 throw OrthancException(ErrorCode_UnknownResource,
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
355 "Cannot merge instance " + instance +
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
356 " into its parent study " + targetStudy_);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
357 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
358 else
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
359 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
360 RegisterSeries(seriesUidMap_, parentSeries);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
361 AddInstance(instance);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
362 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
363 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
364
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
365
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 void MergeStudyJob::GetPublicContent(Json::Value& value)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
368 CleaningInstancesJob::GetPublicContent(value);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 value["TargetStudy"] = targetStudy_;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371
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372
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373 static const char* TARGET_STUDY = "TargetStudy";
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374 static const char* REPLACEMENTS = "Replacements";
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375 static const char* REMOVALS = "Removals";
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376 static const char* SERIES_UID_MAP = "SeriesUIDMap";
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377 static const char* ORIGIN = "Origin";
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378
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379
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380 MergeStudyJob::MergeStudyJob(ServerContext& context,
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381 const Json::Value& serialized) :
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382 CleaningInstancesJob(context, serialized,
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383 false /* by default, remove source instances */) // (*)
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384 {
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385 if (!HasTrailingStep())
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386 {
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387 // Should have been set by (*)
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388 throw OrthancException(ErrorCode_InternalError);
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389 }
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390
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391 targetStudy_ = SerializationToolbox::ReadString(serialized, TARGET_STUDY);
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392 SerializationToolbox::ReadMapOfTags(replacements_, serialized, REPLACEMENTS);
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393 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS);
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394 SerializationToolbox::ReadMapOfStrings(seriesUidMap_, serialized, SERIES_UID_MAP);
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395 origin_ = DicomInstanceOrigin(serialized[ORIGIN]);
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396 }
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397
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398
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399 bool MergeStudyJob::Serialize(Json::Value& target)
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400 {
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401 if (!CleaningInstancesJob::Serialize(target))
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402 {
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403 return false;
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404 }
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405 else
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406 {
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407 target[TARGET_STUDY] = targetStudy_;
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408 SerializationToolbox::WriteMapOfTags(target, replacements_, REPLACEMENTS);
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409 SerializationToolbox::WriteSetOfTags(target, removals_, REMOVALS);
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410 SerializationToolbox::WriteMapOfStrings(target, seriesUidMap_, SERIES_UID_MAP);
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411 origin_.Serialize(target[ORIGIN]);
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412
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413 return true;
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414 }
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415 }
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416 }