annotate OrthancFramework/Sources/DicomParsing/ParsedDicomFile.h @ 4676:caf963ee3de9

DicomModification_Anonymization2017c.impl.h
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 03 Jun 2021 19:44:43 +0200
parents b4c58795f3a8
children 7182f5732480
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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22
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23 #pragma once
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24
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25 #include "../OrthancFramework.h"
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26
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27 #if !defined(ORTHANC_ENABLE_JPEG)
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28 # error Macro ORTHANC_ENABLE_JPEG must be defined to use this file
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29 #endif
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30
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31 #if !defined(ORTHANC_ENABLE_PNG)
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32 # error Macro ORTHANC_ENABLE_PNG must be defined to use this file
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33 #endif
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34
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35 #if !defined(ORTHANC_ENABLE_CIVETWEB)
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36 # error Macro ORTHANC_ENABLE_CIVETWEB must be defined to use this file
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37 #endif
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38
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39 #if !defined(ORTHANC_ENABLE_MONGOOSE)
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40 # error Macro ORTHANC_ENABLE_MONGOOSE must be defined to use this file
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41 #endif
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42
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43 #if !defined(ORTHANC_SANDBOXED)
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44 # error The macro ORTHANC_SANDBOXED must be defined
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45 #endif
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46
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47 #if !defined(ORTHANC_ENABLE_DCMTK)
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48 # error The macro ORTHANC_ENABLE_DCMTK must be defined
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49 #endif
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50
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51 #if ORTHANC_ENABLE_DCMTK != 1
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52 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 to use this file
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53 #endif
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54
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55 #include "ITagVisitor.h"
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56 #include "../DicomFormat/DicomInstanceHasher.h"
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57 #include "../Images/ImageAccessor.h"
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58 #include "../IDynamicObject.h"
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59 #include "../Toolbox.h"
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60
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61 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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62 # include "../RestApi/RestApiOutput.h"
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63 #endif
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64
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65 #include <boost/shared_ptr.hpp>
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67
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68 class DcmDataset;
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69 class DcmFileFormat;
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70
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71 namespace Orthanc
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72 {
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73 class ORTHANC_PUBLIC ParsedDicomFile : public IDynamicObject
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74 {
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75 private:
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76 struct PImpl;
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77 boost::shared_ptr<PImpl> pimpl_;
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78
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79 ParsedDicomFile(const ParsedDicomFile& other,
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80 bool keepSopInstanceUid);
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81
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82 void CreateFromDicomMap(const DicomMap& source,
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83 Encoding defaultEncoding,
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84 bool permissive,
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85 const std::string& defaultPrivateCreator,
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86 const std::map<uint16_t, std::string>& privateCreators);
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87
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88 void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep);
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89
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90 void UpdateStorageUid(const DicomTag& tag,
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91 const std::string& value,
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92 bool decodeDataUriScheme);
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93
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94 void InvalidateCache();
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95
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96 bool EmbedContentInternal(const std::string& dataUriScheme);
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98 // For internal use only, in order to provide const-correctness on
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99 // the top of DCMTK API
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100 DcmFileFormat& GetDcmtkObjectConst() const;
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101
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102 explicit ParsedDicomFile(DcmFileFormat* dicom); // This takes ownership (no clone)
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103
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104 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1
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105 // Alias for binary compatibility with Orthanc Framework 1.7.2 => don't use it anymore
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106 void DatasetToJson(Json::Value& target,
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107 DicomToJsonFormat format,
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108 DicomToJsonFlags flags,
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109 unsigned int maxStringLength);
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110 DcmFileFormat& GetDcmtkObject() const;
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111 void Apply(ITagVisitor& visitor);
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112 ParsedDicomFile* Clone(bool keepSopInstanceUid);
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113 bool LookupTransferSyntax(std::string& result);
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114 bool LookupTransferSyntax(std::string& result) const;
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115 bool GetTagValue(std::string& value,
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116 const DicomTag& tag);
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117 #endif
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118
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119 public:
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120 explicit ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance
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121
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122 ParsedDicomFile(const DicomMap& map,
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123 Encoding defaultEncoding,
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124 bool permissive);
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125
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126 ParsedDicomFile(const DicomMap& map,
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127 Encoding defaultEncoding,
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128 bool permissive,
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129 const std::string& defaultPrivateCreator,
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130 const std::map<uint16_t, std::string>& privateCreators);
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131
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132 ParsedDicomFile(const void* content,
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133 size_t size);
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134
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135 explicit ParsedDicomFile(const std::string& content);
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136
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137 explicit ParsedDicomFile(DcmDataset& dicom); // This clones the DCMTK object
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138
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139 explicit ParsedDicomFile(DcmFileFormat& dicom); // This clones the DCMTK object
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140
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141 static ParsedDicomFile* AcquireDcmtkObject(DcmFileFormat* dicom);
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142
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143 DcmFileFormat& GetDcmtkObject();
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144
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145 // The "ParsedDicomFile" object cannot be used after calling this method
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146 DcmFileFormat* ReleaseDcmtkObject();
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147
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148 ParsedDicomFile* Clone(bool keepSopInstanceUid) const;
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149
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150 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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151 void SendPathValue(RestApiOutput& output,
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152 const UriComponents& uri) const;
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153
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154 void Answer(RestApiOutput& output) const;
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155 #endif
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156
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157 void Remove(const DicomTag& tag);
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158
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159 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization)
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160 void Clear(const DicomTag& tag,
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161 bool onlyIfExists);
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162
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163 void Replace(const DicomTag& tag,
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164 const std::string& utf8Value,
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165 bool decodeDataUriScheme,
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166 DicomReplaceMode mode,
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167 const std::string& privateCreator /* used only for private tags */);
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168
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169 void Replace(const DicomTag& tag,
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170 const Json::Value& value, // Assumed to be encoded with UTF-8
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171 bool decodeDataUriScheme,
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172 DicomReplaceMode mode,
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173 const std::string& privateCreator /* used only for private tags */);
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174
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175 void Insert(const DicomTag& tag,
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176 const Json::Value& value, // Assumed to be encoded with UTF-8
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177 bool decodeDataUriScheme,
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178 const std::string& privateCreator /* used only for private tags */);
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179
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180 // Cannot be applied to private tags
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181 void ReplacePlainString(const DicomTag& tag,
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182 const std::string& utf8Value);
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183
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184 // Cannot be applied to private tags
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185 void SetIfAbsent(const DicomTag& tag,
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186 const std::string& utf8Value);
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187
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188 void RemovePrivateTags();
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189
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190 void RemovePrivateTags(const std::set<DicomTag>& toKeep);
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191
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192 // WARNING: This function handles the decoding of strings to UTF8
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193 bool GetTagValue(std::string& value,
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194 const DicomTag& tag) const;
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195
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196 DicomInstanceHasher GetHasher() const;
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197
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198 // The "Save" methods are not tagged as "const", as the internal
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199 // representation might be changed after serialization
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200 void SaveToMemoryBuffer(std::string& buffer);
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201
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202 #if ORTHANC_SANDBOXED == 0
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203 void SaveToFile(const std::string& path);
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204 #endif
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205
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206 void EmbedContent(const std::string& dataUriScheme);
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207
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208 void EmbedImage(const ImageAccessor& accessor);
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209
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210 void EmbedImage(MimeType mime,
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211 const std::string& content);
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212
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213 Encoding DetectEncoding(bool& hasCodeExtensions) const;
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214
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215 // WARNING: This function only sets the encoding, it will not
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216 // convert the encoding of the tags. Use "ChangeEncoding()" if need be.
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217 void SetEncoding(Encoding encoding);
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218
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219 void DatasetToJson(Json::Value& target,
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220 DicomToJsonFormat format,
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221 DicomToJsonFlags flags,
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222 unsigned int maxStringLength) const;
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223
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224 void DatasetToJson(Json::Value& target,
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225 DicomToJsonFormat format,
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226 DicomToJsonFlags flags,
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227 unsigned int maxStringLength,
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228 const std::set<DicomTag>& ignoreTagLength) const;
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229
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230 void HeaderToJson(Json::Value& target,
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231 DicomToJsonFormat format) const;
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232
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233 bool HasTag(const DicomTag& tag) const;
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234
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235 void EmbedPdf(const std::string& pdf);
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236
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237 bool ExtractPdf(std::string& pdf) const;
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238
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diff changeset
239 void GetRawFrame(std::string& target, // OUT
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240 MimeType& mime, // OUT
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241 unsigned int frameId) const; // IN
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242
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diff changeset
243 unsigned int GetFramesCount() const;
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244
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245 static ParsedDicomFile* CreateFromJson(const Json::Value& value,
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246 DicomFromJsonFlags flags,
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247 const std::string& privateCreator);
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248
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249 void ChangeEncoding(Encoding target);
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250
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251 /**
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252 * The DICOM tags with a string whose size is greater than
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253 * "maxTagLength", are replaced by a DicomValue whose type is
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254 * "DicomValue_Null". If "maxTagLength" is zero, all the leaf tags
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255 * are included, independently of their length.
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256 **/
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257 void ExtractDicomSummary(DicomMap& target,
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258 unsigned int maxTagLength) const;
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259
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260 /**
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261 * This flavor can be used to bypass the "maxTagLength" limitation
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262 * on a selected set of DICOM tags.
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263 **/
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264 void ExtractDicomSummary(DicomMap& target,
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265 unsigned int maxTagLength,
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266 const std::set<DicomTag>& ignoreTagLength) const;
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267
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268 bool LookupTransferSyntax(DicomTransferSyntax& result) const;
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269
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270 bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const;
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271
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272 void Apply(ITagVisitor& visitor) const;
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273
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274 // Decode the given frame, using the built-in DICOM decoder of Orthanc
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275 ImageAccessor* DecodeFrame(unsigned int frame) const;
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276 };
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277 }