Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/ParsedDicomFile.h @ 4676:caf963ee3de9
DicomModification_Anonymization2017c.impl.h
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 03 Jun 2021 19:44:43 +0200 |
parents | b4c58795f3a8 |
children | 7182f5732480 |
rev | line source |
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790 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
790 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
790 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
790 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
790 | 20 **/ |
21 | |
22 | |
23 #pragma once | |
24 | |
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25 #include "../OrthancFramework.h" |
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26 |
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27 #if !defined(ORTHANC_ENABLE_JPEG) |
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28 # error Macro ORTHANC_ENABLE_JPEG must be defined to use this file |
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29 #endif |
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30 |
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31 #if !defined(ORTHANC_ENABLE_PNG) |
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32 # error Macro ORTHANC_ENABLE_PNG must be defined to use this file |
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33 #endif |
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34 |
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35 #if !defined(ORTHANC_ENABLE_CIVETWEB) |
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36 # error Macro ORTHANC_ENABLE_CIVETWEB must be defined to use this file |
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37 #endif |
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38 |
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39 #if !defined(ORTHANC_ENABLE_MONGOOSE) |
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40 # error Macro ORTHANC_ENABLE_MONGOOSE must be defined to use this file |
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41 #endif |
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42 |
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43 #if !defined(ORTHANC_SANDBOXED) |
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44 # error The macro ORTHANC_SANDBOXED must be defined |
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45 #endif |
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46 |
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47 #if !defined(ORTHANC_ENABLE_DCMTK) |
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48 # error The macro ORTHANC_ENABLE_DCMTK must be defined |
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49 #endif |
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50 |
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51 #if ORTHANC_ENABLE_DCMTK != 1 |
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52 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 to use this file |
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53 #endif |
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54 |
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55 #include "ITagVisitor.h" |
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56 #include "../DicomFormat/DicomInstanceHasher.h" |
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57 #include "../Images/ImageAccessor.h" |
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58 #include "../IDynamicObject.h" |
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59 #include "../Toolbox.h" |
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60 |
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61 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
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62 # include "../RestApi/RestApiOutput.h" |
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63 #endif |
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64 |
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65 #include <boost/shared_ptr.hpp> |
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66 |
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67 |
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68 class DcmDataset; |
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69 class DcmFileFormat; |
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70 |
790 | 71 namespace Orthanc |
72 { | |
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73 class ORTHANC_PUBLIC ParsedDicomFile : public IDynamicObject |
790 | 74 { |
75 private: | |
794 | 76 struct PImpl; |
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77 boost::shared_ptr<PImpl> pimpl_; |
790 | 78 |
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80 bool keepSopInstanceUid); |
790 | 81 |
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82 void CreateFromDicomMap(const DicomMap& source, |
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83 Encoding defaultEncoding, |
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84 bool permissive, |
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85 const std::string& defaultPrivateCreator, |
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86 const std::map<uint16_t, std::string>& privateCreators); |
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87 |
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88 void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep); |
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89 |
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90 void UpdateStorageUid(const DicomTag& tag, |
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91 const std::string& value, |
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92 bool decodeDataUriScheme); |
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93 |
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94 void InvalidateCache(); |
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95 |
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96 bool EmbedContentInternal(const std::string& dataUriScheme); |
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97 |
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98 // For internal use only, in order to provide const-correctness on |
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99 // the top of DCMTK API |
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100 DcmFileFormat& GetDcmtkObjectConst() const; |
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101 |
4200 | 102 explicit ParsedDicomFile(DcmFileFormat* dicom); // This takes ownership (no clone) |
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103 |
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104 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1 |
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105 // Alias for binary compatibility with Orthanc Framework 1.7.2 => don't use it anymore |
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106 void DatasetToJson(Json::Value& target, |
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107 DicomToJsonFormat format, |
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108 DicomToJsonFlags flags, |
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109 unsigned int maxStringLength); |
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110 DcmFileFormat& GetDcmtkObject() const; |
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111 void Apply(ITagVisitor& visitor); |
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112 ParsedDicomFile* Clone(bool keepSopInstanceUid); |
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113 bool LookupTransferSyntax(std::string& result); |
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114 bool LookupTransferSyntax(std::string& result) const; |
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115 bool GetTagValue(std::string& value, |
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116 const DicomTag& tag); |
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117 #endif |
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118 |
790 | 119 public: |
4199 | 120 explicit ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance |
790 | 121 |
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122 ParsedDicomFile(const DicomMap& map, |
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123 Encoding defaultEncoding, |
4199 | 124 bool permissive); |
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125 |
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126 ParsedDicomFile(const DicomMap& map, |
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127 Encoding defaultEncoding, |
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128 bool permissive, |
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129 const std::string& defaultPrivateCreator, |
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130 const std::map<uint16_t, std::string>& privateCreators); |
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131 |
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132 ParsedDicomFile(const void* content, |
791 | 133 size_t size); |
790 | 134 |
4199 | 135 explicit ParsedDicomFile(const std::string& content); |
790 | 136 |
4199 | 137 explicit ParsedDicomFile(DcmDataset& dicom); // This clones the DCMTK object |
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4199 | 139 explicit ParsedDicomFile(DcmFileFormat& dicom); // This clones the DCMTK object |
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140 |
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141 static ParsedDicomFile* AcquireDcmtkObject(DcmFileFormat* dicom); |
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142 |
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143 DcmFileFormat& GetDcmtkObject(); |
790 | 144 |
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145 // The "ParsedDicomFile" object cannot be used after calling this method |
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146 DcmFileFormat* ReleaseDcmtkObject(); |
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147 |
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148 ParsedDicomFile* Clone(bool keepSopInstanceUid) const; |
790 | 149 |
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150 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
790 | 151 void SendPathValue(RestApiOutput& output, |
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152 const UriComponents& uri) const; |
790 | 153 |
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154 void Answer(RestApiOutput& output) const; |
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155 #endif |
790 | 156 |
157 void Remove(const DicomTag& tag); | |
158 | |
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159 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) |
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160 void Clear(const DicomTag& tag, |
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161 bool onlyIfExists); |
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162 |
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163 void Replace(const DicomTag& tag, |
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164 const std::string& utf8Value, |
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165 bool decodeDataUriScheme, |
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166 DicomReplaceMode mode, |
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167 const std::string& privateCreator /* used only for private tags */); |
1695 | 168 |
169 void Replace(const DicomTag& tag, | |
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170 const Json::Value& value, // Assumed to be encoded with UTF-8 |
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171 bool decodeDataUriScheme, |
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172 DicomReplaceMode mode, |
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173 const std::string& privateCreator /* used only for private tags */); |
790 | 174 |
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175 void Insert(const DicomTag& tag, |
1695 | 176 const Json::Value& value, // Assumed to be encoded with UTF-8 |
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177 bool decodeDataUriScheme, |
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178 const std::string& privateCreator /* used only for private tags */); |
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179 |
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180 // Cannot be applied to private tags |
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181 void ReplacePlainString(const DicomTag& tag, |
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182 const std::string& utf8Value); |
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183 |
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184 // Cannot be applied to private tags |
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185 void SetIfAbsent(const DicomTag& tag, |
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186 const std::string& utf8Value); |
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187 |
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188 void RemovePrivateTags(); |
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189 |
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190 void RemovePrivateTags(const std::set<DicomTag>& toKeep); |
790 | 191 |
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192 // WARNING: This function handles the decoding of strings to UTF8 |
790 | 193 bool GetTagValue(std::string& value, |
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194 const DicomTag& tag) const; |
790 | 195 |
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196 DicomInstanceHasher GetHasher() const; |
790 | 197 |
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198 // The "Save" methods are not tagged as "const", as the internal |
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199 // representation might be changed after serialization |
790 | 200 void SaveToMemoryBuffer(std::string& buffer); |
201 | |
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202 #if ORTHANC_SANDBOXED == 0 |
790 | 203 void SaveToFile(const std::string& path); |
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204 #endif |
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205 |
1562 | 206 void EmbedContent(const std::string& dataUriScheme); |
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207 |
1562 | 208 void EmbedImage(const ImageAccessor& accessor); |
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209 |
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210 void EmbedImage(MimeType mime, |
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211 const std::string& content); |
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212 |
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213 Encoding DetectEncoding(bool& hasCodeExtensions) const; |
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214 |
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215 // WARNING: This function only sets the encoding, it will not |
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216 // convert the encoding of the tags. Use "ChangeEncoding()" if need be. |
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217 void SetEncoding(Encoding encoding); |
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218 |
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219 void DatasetToJson(Json::Value& target, |
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220 DicomToJsonFormat format, |
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221 DicomToJsonFlags flags, |
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222 unsigned int maxStringLength) const; |
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223 |
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224 void DatasetToJson(Json::Value& target, |
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225 DicomToJsonFormat format, |
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226 DicomToJsonFlags flags, |
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227 unsigned int maxStringLength, |
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228 const std::set<DicomTag>& ignoreTagLength) const; |
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229 |
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230 void HeaderToJson(Json::Value& target, |
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231 DicomToJsonFormat format) const; |
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232 |
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233 bool HasTag(const DicomTag& tag) const; |
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234 |
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235 void EmbedPdf(const std::string& pdf); |
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236 |
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237 bool ExtractPdf(std::string& pdf) const; |
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238 |
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239 void GetRawFrame(std::string& target, // OUT |
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240 MimeType& mime, // OUT |
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241 unsigned int frameId) const; // IN |
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242 |
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243 unsigned int GetFramesCount() const; |
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244 |
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245 static ParsedDicomFile* CreateFromJson(const Json::Value& value, |
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246 DicomFromJsonFlags flags, |
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247 const std::string& privateCreator); |
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248 |
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249 void ChangeEncoding(Encoding target); |
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250 |
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251 /** |
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252 * The DICOM tags with a string whose size is greater than |
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253 * "maxTagLength", are replaced by a DicomValue whose type is |
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254 * "DicomValue_Null". If "maxTagLength" is zero, all the leaf tags |
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255 * are included, independently of their length. |
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256 **/ |
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257 void ExtractDicomSummary(DicomMap& target, |
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258 unsigned int maxTagLength) const; |
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259 |
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260 /** |
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261 * This flavor can be used to bypass the "maxTagLength" limitation |
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262 * on a selected set of DICOM tags. |
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263 **/ |
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264 void ExtractDicomSummary(DicomMap& target, |
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265 unsigned int maxTagLength, |
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266 const std::set<DicomTag>& ignoreTagLength) const; |
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267 |
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268 bool LookupTransferSyntax(DicomTransferSyntax& result) const; |
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269 |
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270 bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const; |
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271 |
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272 void Apply(ITagVisitor& visitor) const; |
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273 |
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274 // Decode the given frame, using the built-in DICOM decoder of Orthanc |
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275 ImageAccessor* DecodeFrame(unsigned int frame) const; |
790 | 276 }; |
277 } |