annotate OrthancServer/OrthancRestApi.cpp @ 541:c8347eef225b dicom-rt

volume of structures
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 04 Sep 2013 13:46:08 +0200
parents e318e9d49815
children b82292ba2083
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2013 Medical Physics Department, CHU of Liege,
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4 * Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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32
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33 #include "OrthancRestApi.h"
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34
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35 #include "../Core/Compression/HierarchicalZipWriter.h"
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36 #include "../Core/HttpClient.h"
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37 #include "../Core/HttpServer/FilesystemHttpSender.h"
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38 #include "../Core/Uuid.h"
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39 #include "DicomProtocol/DicomUserConnection.h"
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40 #include "FromDcmtkBridge.h"
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41 #include "OrthancInitialization.h"
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42 #include "ServerToolbox.h"
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43
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44 #include <dcmtk/dcmdata/dcistrmb.h>
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45 #include <dcmtk/dcmdata/dcfilefo.h>
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46 #include <boost/lexical_cast.hpp>
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47 #include <glog/logging.h>
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49
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50 #define RETRIEVE_CONTEXT(call) \
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51 OrthancRestApi& contextApi = \
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52 dynamic_cast<OrthancRestApi&>(call.GetContext()); \
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53 ServerContext& context = contextApi.GetContext()
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54
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55 #define RETRIEVE_MODALITIES(call) \
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56 const OrthancRestApi::SetOfStrings& modalities = \
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57 dynamic_cast<OrthancRestApi&>(call.GetContext()).GetModalities();
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58
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59 #define RETRIEVE_PEERS(call) \
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60 const OrthancRestApi::SetOfStrings& peers = \
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61 dynamic_cast<OrthancRestApi&>(call.GetContext()).GetPeers();
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65 namespace Orthanc
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66 {
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67 // DICOM SCU ----------------------------------------------------------------
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68
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69 static void ConnectToModality(DicomUserConnection& connection,
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70 const std::string& name)
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71 {
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72 std::string aet, address;
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73 int port;
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74 ModalityManufacturer manufacturer;
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75 GetDicomModality(name, aet, address, port, manufacturer);
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76 connection.SetLocalApplicationEntityTitle(GetGlobalStringParameter("DicomAet", "ORTHANC"));
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77 connection.SetDistantApplicationEntityTitle(aet);
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78 connection.SetDistantHost(address);
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79 connection.SetDistantPort(port);
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80 connection.SetDistantManufacturer(manufacturer);
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81 connection.Open();
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82 }
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83
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84 static bool MergeQueryAndTemplate(DicomMap& result,
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85 const std::string& postData)
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86 {
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87 Json::Value query;
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88 Json::Reader reader;
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89
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90 if (!reader.parse(postData, query) ||
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91 query.type() != Json::objectValue)
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92 {
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93 return false;
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94 }
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95
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96 Json::Value::Members members = query.getMemberNames();
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97 for (size_t i = 0; i < members.size(); i++)
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98 {
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99 DicomTag t = FromDcmtkBridge::ParseTag(members[i]);
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100 result.SetValue(t, query[members[i]].asString());
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101 }
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102
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103 return true;
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104 }
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105
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106 static void DicomFindPatient(RestApi::PostCall& call)
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107 {
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108 DicomMap m;
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109 DicomMap::SetupFindPatientTemplate(m);
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110 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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111 {
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112 return;
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113 }
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114
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115 DicomUserConnection connection;
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116 ConnectToModality(connection, call.GetUriComponent("id", ""));
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117
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118 DicomFindAnswers answers;
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119 connection.FindPatient(answers, m);
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120
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121 Json::Value result;
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122 answers.ToJson(result);
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123 call.GetOutput().AnswerJson(result);
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124 }
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125
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126 static void DicomFindStudy(RestApi::PostCall& call)
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127 {
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128 DicomMap m;
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129 DicomMap::SetupFindStudyTemplate(m);
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130 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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131 {
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diff changeset
132 return;
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parents: 226
diff changeset
133 }
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parents: 226
diff changeset
134
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diff changeset
135 if (m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 &&
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diff changeset
136 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2)
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diff changeset
137 {
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diff changeset
138 return;
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parents: 226
diff changeset
139 }
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diff changeset
140
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diff changeset
141 DicomUserConnection connection;
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diff changeset
142 ConnectToModality(connection, call.GetUriComponent("id", ""));
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diff changeset
143
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diff changeset
144 DicomFindAnswers answers;
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diff changeset
145 connection.FindStudy(answers, m);
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diff changeset
146
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diff changeset
147 Json::Value result;
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diff changeset
148 answers.ToJson(result);
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diff changeset
149 call.GetOutput().AnswerJson(result);
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diff changeset
150 }
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diff changeset
151
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diff changeset
152 static void DicomFindSeries(RestApi::PostCall& call)
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diff changeset
153 {
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diff changeset
154 DicomMap m;
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diff changeset
155 DicomMap::SetupFindSeriesTemplate(m);
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diff changeset
156 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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diff changeset
157 {
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diff changeset
158 return;
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diff changeset
159 }
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parents: 226
diff changeset
160
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diff changeset
161 if ((m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 &&
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diff changeset
162 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) ||
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diff changeset
163 m.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString().size() <= 2)
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diff changeset
164 {
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diff changeset
165 return;
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parents: 226
diff changeset
166 }
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diff changeset
167
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diff changeset
168 DicomUserConnection connection;
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169 ConnectToModality(connection, call.GetUriComponent("id", ""));
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diff changeset
170
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diff changeset
171 DicomFindAnswers answers;
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diff changeset
172 connection.FindSeries(answers, m);
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diff changeset
173
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diff changeset
174 Json::Value result;
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diff changeset
175 answers.ToJson(result);
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diff changeset
176 call.GetOutput().AnswerJson(result);
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diff changeset
177 }
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diff changeset
178
499
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diff changeset
179 static void DicomFindInstance(RestApi::PostCall& call)
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180 {
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diff changeset
181 DicomMap m;
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diff changeset
182 DicomMap::SetupFindInstanceTemplate(m);
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parents: 485
diff changeset
183 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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parents: 485
diff changeset
184 {
7db04aa5104f instance-level find scu
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diff changeset
185 return;
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parents: 485
diff changeset
186 }
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parents: 485
diff changeset
187
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diff changeset
188 if ((m.GetValue(DICOM_TAG_ACCESSION_NUMBER).AsString().size() <= 2 &&
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parents: 485
diff changeset
189 m.GetValue(DICOM_TAG_PATIENT_ID).AsString().size() <= 2) ||
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diff changeset
190 m.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString().size() <= 2 ||
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parents: 485
diff changeset
191 m.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).AsString().size() <= 2)
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diff changeset
192 {
7db04aa5104f instance-level find scu
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diff changeset
193 return;
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parents: 485
diff changeset
194 }
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diff changeset
195
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diff changeset
196 DicomUserConnection connection;
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diff changeset
197 ConnectToModality(connection, call.GetUriComponent("id", ""));
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parents: 485
diff changeset
198
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diff changeset
199 DicomFindAnswers answers;
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diff changeset
200 connection.FindInstance(answers, m);
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parents: 485
diff changeset
201
7db04aa5104f instance-level find scu
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diff changeset
202 Json::Value result;
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parents: 485
diff changeset
203 answers.ToJson(result);
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diff changeset
204 call.GetOutput().AnswerJson(result);
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parents: 485
diff changeset
205 }
7db04aa5104f instance-level find scu
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parents: 485
diff changeset
206
227
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diff changeset
207 static void DicomFind(RestApi::PostCall& call)
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diff changeset
208 {
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diff changeset
209 DicomMap m;
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diff changeset
210 DicomMap::SetupFindPatientTemplate(m);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
211 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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parents: 226
diff changeset
212 {
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
213 return;
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
214 }
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parents: 226
diff changeset
215
209ca3f6db62 dicom-scu from rest
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diff changeset
216 DicomUserConnection connection;
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parents: 226
diff changeset
217 ConnectToModality(connection, call.GetUriComponent("id", ""));
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parents: 226
diff changeset
218
209ca3f6db62 dicom-scu from rest
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diff changeset
219 DicomFindAnswers patients;
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parents: 226
diff changeset
220 connection.FindPatient(patients, m);
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diff changeset
221
209ca3f6db62 dicom-scu from rest
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diff changeset
222 // Loop over the found patients
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diff changeset
223 Json::Value result = Json::arrayValue;
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parents: 226
diff changeset
224 for (size_t i = 0; i < patients.GetSize(); i++)
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parents: 226
diff changeset
225 {
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
226 Json::Value patient(Json::objectValue);
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
227 FromDcmtkBridge::ToJson(patient, patients.GetAnswer(i));
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parents: 226
diff changeset
228
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
229 DicomMap::SetupFindStudyTemplate(m);
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parents: 226
diff changeset
230 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
231 {
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
232 return;
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
233 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
234 m.CopyTagIfExists(patients.GetAnswer(i), DICOM_TAG_PATIENT_ID);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
235
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
236 DicomFindAnswers studies;
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
237 connection.FindStudy(studies, m);
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
238
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
239 patient["Studies"] = Json::arrayValue;
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
240
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
241 // Loop over the found studies
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parents: 226
diff changeset
242 for (size_t j = 0; j < studies.GetSize(); j++)
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
243 {
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
244 Json::Value study(Json::objectValue);
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
245 FromDcmtkBridge::ToJson(study, studies.GetAnswer(j));
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parents: 226
diff changeset
246
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
247 DicomMap::SetupFindSeriesTemplate(m);
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parents: 226
diff changeset
248 if (!MergeQueryAndTemplate(m, call.GetPostBody()))
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parents: 226
diff changeset
249 {
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
250 return;
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
251 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
252 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_PATIENT_ID);
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parents: 226
diff changeset
253 m.CopyTagIfExists(studies.GetAnswer(j), DICOM_TAG_STUDY_INSTANCE_UID);
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parents: 226
diff changeset
254
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
255 DicomFindAnswers series;
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
256 connection.FindSeries(series, m);
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
257
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
258 // Loop over the found series
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parents: 226
diff changeset
259 study["Series"] = Json::arrayValue;
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
260 for (size_t k = 0; k < series.GetSize(); k++)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
261 {
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
262 Json::Value series2(Json::objectValue);
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
263 FromDcmtkBridge::ToJson(series2, series.GetAnswer(k));
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
264 study["Series"].append(series2);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
265 }
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
266
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
267 patient["Studies"].append(study);
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
268 }
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parents: 226
diff changeset
269
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
270 result.append(patient);
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
271 }
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diff changeset
272
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273 call.GetOutput().AnswerJson(result);
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diff changeset
274 }
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diff changeset
275
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276
485
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277 static bool GetInstancesToExport(std::list<std::string>& instances,
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278 const std::string& remote,
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279 RestApi::PostCall& call)
227
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280 {
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diff changeset
281 RETRIEVE_CONTEXT(call);
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282
402
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283 std::string stripped = Toolbox::StripSpaces(call.GetPostBody());
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284
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285 Json::Value request;
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286 if (Toolbox::IsSHA1(stripped))
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287 {
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288 // This is for compatibility with Orthanc <= 0.5.1.
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289 request = stripped;
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290 }
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291 else if (!call.ParseJsonRequest(request))
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292 {
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293 // Bad JSON request
485
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294 return false;
402
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295 }
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296
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297 if (request.isString())
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298 {
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299 context.GetIndex().LogExportedResource(request.asString(), remote);
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300 context.GetIndex().GetChildInstances(instances, request.asString());
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301 }
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302 else if (request.isArray())
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303 {
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304 for (Json::Value::ArrayIndex i = 0; i < request.size(); i++)
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305 {
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306 if (!request[i].isString())
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307 {
485
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308 return false;
402
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diff changeset
309 }
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diff changeset
310
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diff changeset
311 std::string stripped = Toolbox::StripSpaces(request[i].asString());
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312 if (!Toolbox::IsSHA1(stripped))
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diff changeset
313 {
485
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314 return false;
402
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diff changeset
315 }
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diff changeset
316
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diff changeset
317 context.GetIndex().LogExportedResource(stripped, remote);
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diff changeset
318
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319 std::list<std::string> tmp;
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diff changeset
320 context.GetIndex().GetChildInstances(tmp, stripped);
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diff changeset
321 instances.merge(tmp);
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diff changeset
322 assert(tmp.size() == 0);
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diff changeset
323 }
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diff changeset
324 }
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diff changeset
325 else
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diff changeset
326 {
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diff changeset
327 // Neither a string, nor a list of strings. Bad request.
485
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diff changeset
328 return false;
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diff changeset
329 }
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diff changeset
330
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diff changeset
331 return true;
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diff changeset
332 }
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parents: 484
diff changeset
333
bdbde1fbfab3 send resources through HTTP
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parents: 484
diff changeset
334
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diff changeset
335 static void DicomStore(RestApi::PostCall& call)
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diff changeset
336 {
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diff changeset
337 RETRIEVE_CONTEXT(call);
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diff changeset
338
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diff changeset
339 std::string remote = call.GetUriComponent("id", "");
bdbde1fbfab3 send resources through HTTP
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parents: 484
diff changeset
340
bdbde1fbfab3 send resources through HTTP
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diff changeset
341 std::list<std::string> instances;
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parents: 484
diff changeset
342 if (!GetInstancesToExport(instances, remote, call))
bdbde1fbfab3 send resources through HTTP
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parents: 484
diff changeset
343 {
402
d2c69150a979 bulk storescu
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diff changeset
344 return;
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diff changeset
345 }
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diff changeset
346
227
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diff changeset
347 DicomUserConnection connection;
231
8098448bd827 export log
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parents: 230
diff changeset
348 ConnectToModality(connection, remote);
8098448bd827 export log
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parents: 230
diff changeset
349
402
d2c69150a979 bulk storescu
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parents: 399
diff changeset
350 for (std::list<std::string>::const_iterator
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
351 it = instances.begin(); it != instances.end(); it++)
227
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
352 {
485
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
353 LOG(INFO) << "Sending resource " << *it << " to modality \"" << remote << "\"";
bdbde1fbfab3 send resources through HTTP
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parents: 484
diff changeset
354
402
d2c69150a979 bulk storescu
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diff changeset
355 std::string dicom;
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parents: 399
diff changeset
356 context.ReadFile(dicom, *it, FileContentType_Dicom);
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parents: 399
diff changeset
357 connection.Store(dicom);
227
209ca3f6db62 dicom-scu from rest
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diff changeset
358 }
231
8098448bd827 export log
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parents: 230
diff changeset
359
402
d2c69150a979 bulk storescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
360 call.GetOutput().AnswerBuffer("{}", "application/json");
227
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
361 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
362
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
363
209ca3f6db62 dicom-scu from rest
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parents: 226
diff changeset
364
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
365 // System information -------------------------------------------------------
211
b7aea293b965 list of resources
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parents: 210
diff changeset
366
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parents: 210
diff changeset
367 static void ServeRoot(RestApi::GetCall& call)
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parents: 210
diff changeset
368 {
b7aea293b965 list of resources
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parents: 210
diff changeset
369 call.GetOutput().Redirect("app/explorer.html");
b7aea293b965 list of resources
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parents: 210
diff changeset
370 }
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
371
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
372 static void GetSystemInformation(RestApi::GetCall& call)
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
373 {
238
e4148b0ab1d0 statistics URI
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parents: 237
diff changeset
374 Json::Value result = Json::objectValue;
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
375
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 result["Version"] = ORTHANC_VERSION;
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
377 result["Name"] = GetGlobalStringParameter("Name", "");
238
e4148b0ab1d0 statistics URI
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parents: 237
diff changeset
378
e4148b0ab1d0 statistics URI
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parents: 237
diff changeset
379 call.GetOutput().AnswerJson(result);
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
380 }
227
209ca3f6db62 dicom-scu from rest
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diff changeset
381
238
e4148b0ab1d0 statistics URI
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diff changeset
382 static void GetStatistics(RestApi::GetCall& call)
e4148b0ab1d0 statistics URI
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parents: 237
diff changeset
383 {
e4148b0ab1d0 statistics URI
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parents: 237
diff changeset
384 RETRIEVE_CONTEXT(call);
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
385 Json::Value result = Json::objectValue;
e4148b0ab1d0 statistics URI
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parents: 237
diff changeset
386 context.GetIndex().ComputeStatistics(result);
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
387 call.GetOutput().AnswerJson(result);
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parents:
diff changeset
388 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
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parents:
diff changeset
389
342
a58a8be26aff generation of random uid in the rest api
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parents: 321
diff changeset
390 static void GenerateUid(RestApi::GetCall& call)
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parents: 321
diff changeset
391 {
a58a8be26aff generation of random uid in the rest api
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parents: 321
diff changeset
392 std::string level = call.GetArgument("level", "");
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parents: 321
diff changeset
393 if (level == "patient")
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
394 {
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
395 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Patient), "text/plain");
a58a8be26aff generation of random uid in the rest api
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parents: 321
diff changeset
396 }
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
397 else if (level == "study")
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
398 {
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
399 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Study), "text/plain");
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
400 }
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
401 else if (level == "series")
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
402 {
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
403 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Series), "text/plain");
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
404 }
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
405 else if (level == "instance")
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
406 {
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
407 call.GetOutput().AnswerBuffer(FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Instance), "text/plain");
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
408 }
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
409 }
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
410
418
b79bf2f4ab2e execution of lua through REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 413
diff changeset
411 static void ExecuteScript(RestApi::PostCall& call)
b79bf2f4ab2e execution of lua through REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 413
diff changeset
412 {
b79bf2f4ab2e execution of lua through REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 413
diff changeset
413 std::string result;
b79bf2f4ab2e execution of lua through REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 413
diff changeset
414 RETRIEVE_CONTEXT(call);
b79bf2f4ab2e execution of lua through REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 413
diff changeset
415 context.GetLuaContext().Execute(result, call.GetPostBody());
b79bf2f4ab2e execution of lua through REST
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parents: 413
diff changeset
416 call.GetOutput().AnswerBuffer(result, "text/plain");
b79bf2f4ab2e execution of lua through REST
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parents: 413
diff changeset
417 }
b79bf2f4ab2e execution of lua through REST
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parents: 413
diff changeset
418
446
b7ef1a7d857e /tools/now
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 443
diff changeset
419 static void GetNowIsoString(RestApi::GetCall& call)
b7ef1a7d857e /tools/now
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parents: 443
diff changeset
420 {
b7ef1a7d857e /tools/now
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 443
diff changeset
421 call.GetOutput().AnswerBuffer(Toolbox::GetNowIsoString(), "text/plain");
b7ef1a7d857e /tools/now
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 443
diff changeset
422 }
b7ef1a7d857e /tools/now
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 443
diff changeset
423
b7ef1a7d857e /tools/now
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 443
diff changeset
424
b7ef1a7d857e /tools/now
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 443
diff changeset
425
418
b79bf2f4ab2e execution of lua through REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 413
diff changeset
426
b79bf2f4ab2e execution of lua through REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 413
diff changeset
427
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428
211
b7aea293b965 list of resources
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diff changeset
429 // List all the patients, studies, series or instances ----------------------
b7aea293b965 list of resources
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diff changeset
430
b7aea293b965 list of resources
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diff changeset
431 template <enum ResourceType resourceType>
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diff changeset
432 static void ListResources(RestApi::GetCall& call)
b7aea293b965 list of resources
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diff changeset
433 {
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
434 RETRIEVE_CONTEXT(call);
b7aea293b965 list of resources
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diff changeset
435
b7aea293b965 list of resources
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parents: 210
diff changeset
436 Json::Value result;
b7aea293b965 list of resources
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parents: 210
diff changeset
437 context.GetIndex().GetAllUuids(result, resourceType);
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
438 call.GetOutput().AnswerJson(result);
b7aea293b965 list of resources
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parents: 210
diff changeset
439 }
b7aea293b965 list of resources
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parents: 210
diff changeset
440
212
f276b175dcaf delete resources
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diff changeset
441 template <enum ResourceType resourceType>
f276b175dcaf delete resources
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diff changeset
442 static void GetSingleResource(RestApi::GetCall& call)
f276b175dcaf delete resources
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diff changeset
443 {
f276b175dcaf delete resources
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diff changeset
444 RETRIEVE_CONTEXT(call);
f276b175dcaf delete resources
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diff changeset
445
f276b175dcaf delete resources
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diff changeset
446 Json::Value result;
f276b175dcaf delete resources
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parents: 211
diff changeset
447 if (context.GetIndex().LookupResource(result, call.GetUriComponent("id", ""), resourceType))
f276b175dcaf delete resources
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parents: 211
diff changeset
448 {
f276b175dcaf delete resources
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diff changeset
449 call.GetOutput().AnswerJson(result);
f276b175dcaf delete resources
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parents: 211
diff changeset
450 }
f276b175dcaf delete resources
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diff changeset
451 }
f276b175dcaf delete resources
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parents: 211
diff changeset
452
f276b175dcaf delete resources
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diff changeset
453 template <enum ResourceType resourceType>
f276b175dcaf delete resources
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parents: 211
diff changeset
454 static void DeleteSingleResource(RestApi::DeleteCall& call)
f276b175dcaf delete resources
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parents: 211
diff changeset
455 {
f276b175dcaf delete resources
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diff changeset
456 RETRIEVE_CONTEXT(call);
f276b175dcaf delete resources
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diff changeset
457
f276b175dcaf delete resources
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diff changeset
458 Json::Value result;
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
459 if (context.GetIndex().DeleteResource(result, call.GetUriComponent("id", ""), resourceType))
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
460 {
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
461 call.GetOutput().AnswerJson(result);
f276b175dcaf delete resources
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parents: 211
diff changeset
462 }
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
463 }
f276b175dcaf delete resources
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parents: 211
diff changeset
464
211
b7aea293b965 list of resources
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diff changeset
465
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
466 // Download of ZIP files ----------------------------------------------------
2442033911d6 creation of zip files
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diff changeset
467
250
f23318b11b39 creation of zip files
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diff changeset
468
f23318b11b39 creation of zip files
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parents: 249
diff changeset
469 static std::string GetDirectoryNameInArchive(const Json::Value& resource,
f23318b11b39 creation of zip files
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diff changeset
470 ResourceType resourceType)
f23318b11b39 creation of zip files
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diff changeset
471 {
f23318b11b39 creation of zip files
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parents: 249
diff changeset
472 switch (resourceType)
f23318b11b39 creation of zip files
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diff changeset
473 {
f23318b11b39 creation of zip files
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diff changeset
474 case ResourceType_Patient:
f23318b11b39 creation of zip files
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475 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
476 std::string p = resource["MainDicomTags"]["PatientID"].asString();
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
477 std::string n = resource["MainDicomTags"]["PatientName"].asString();
f23318b11b39 creation of zip files
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diff changeset
478 return p + " " + n;
f23318b11b39 creation of zip files
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diff changeset
479 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
480
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
481 case ResourceType_Study:
253
15fcd925b05b improvement
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
482 {
250
f23318b11b39 creation of zip files
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parents: 249
diff changeset
483 return resource["MainDicomTags"]["StudyDescription"].asString();
253
15fcd925b05b improvement
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parents: 250
diff changeset
484 }
250
f23318b11b39 creation of zip files
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parents: 249
diff changeset
485
f23318b11b39 creation of zip files
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parents: 249
diff changeset
486 case ResourceType_Series:
253
15fcd925b05b improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 250
diff changeset
487 {
15fcd925b05b improvement
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
488 std::string d = resource["MainDicomTags"]["SeriesDescription"].asString();
15fcd925b05b improvement
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diff changeset
489 std::string m = resource["MainDicomTags"]["Modality"].asString();
15fcd925b05b improvement
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
490 return m + " " + d;
15fcd925b05b improvement
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 250
diff changeset
491 }
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
492
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
493 default:
f23318b11b39 creation of zip files
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parents: 249
diff changeset
494 throw OrthancException(ErrorCode_InternalError);
f23318b11b39 creation of zip files
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parents: 249
diff changeset
495 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
496 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
497
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
498 static bool CreateRootDirectoryInArchive(HierarchicalZipWriter& writer,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
499 ServerContext& context,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
500 const Json::Value& resource,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
501 ResourceType resourceType)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
502 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
503 if (resourceType == ResourceType_Patient)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
504 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
505 return true;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
506 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
507
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
508 ResourceType parentType = GetParentResourceType(resourceType);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
509 Json::Value parent;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
510
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
511 switch (resourceType)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
512 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
513 case ResourceType_Study:
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
514 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
515 if (!context.GetIndex().LookupResource(parent, resource["ParentPatient"].asString(), parentType))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
516 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
517 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
518 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
519
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
520 break;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
521 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
522
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
523 case ResourceType_Series:
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
524 if (!context.GetIndex().LookupResource(parent, resource["ParentStudy"].asString(), parentType) ||
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
525 !CreateRootDirectoryInArchive(writer, context, parent, parentType))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
526 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
527 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
528 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
529 break;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
530
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
531 default:
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
532 throw OrthancException(ErrorCode_NotImplemented);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
533 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
534
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
535 writer.OpenDirectory(GetDirectoryNameInArchive(parent, parentType).c_str());
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
536 return true;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
537 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
538
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
539 static bool ArchiveInstance(HierarchicalZipWriter& writer,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
540 ServerContext& context,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
541 const std::string& instancePublicId)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
542 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
543 Json::Value instance;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
544 if (!context.GetIndex().LookupResource(instance, instancePublicId, ResourceType_Instance))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
545 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
546 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
547 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
548
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
549 std::string filename = instance["MainDicomTags"]["SOPInstanceUID"].asString() + ".dcm";
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
550 writer.OpenFile(filename.c_str());
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
551
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
552 std::string dicom;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
553 context.ReadFile(dicom, instancePublicId, FileContentType_Dicom);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
554 writer.Write(dicom);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
555
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
556 return true;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
557 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
558
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
559 static bool ArchiveInternal(HierarchicalZipWriter& writer,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
560 ServerContext& context,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
561 const std::string& publicId,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
562 ResourceType resourceType,
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
563 bool isFirstLevel)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
564 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
565 Json::Value resource;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
566 if (!context.GetIndex().LookupResource(resource, publicId, resourceType))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
567 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
568 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
569 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
570
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
571 if (isFirstLevel &&
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
572 !CreateRootDirectoryInArchive(writer, context, resource, resourceType))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
573 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
574 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
575 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
576
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
577 writer.OpenDirectory(GetDirectoryNameInArchive(resource, resourceType).c_str());
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
578
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
579 switch (resourceType)
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
580 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
581 case ResourceType_Patient:
299
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
582 for (Json::Value::ArrayIndex i = 0; i < resource["Studies"].size(); i++)
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
583 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
584 std::string studyId = resource["Studies"][i].asString();
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
585 if (!ArchiveInternal(writer, context, studyId, ResourceType_Study, false))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
586 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
587 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
588 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
589 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
590 break;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
591
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
592 case ResourceType_Study:
299
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
593 for (Json::Value::ArrayIndex i = 0; i < resource["Series"].size(); i++)
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
594 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
595 std::string seriesId = resource["Series"][i].asString();
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
596 if (!ArchiveInternal(writer, context, seriesId, ResourceType_Series, false))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
597 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
598 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
599 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
600 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
601 break;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
602
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
603 case ResourceType_Series:
299
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
604 for (Json::Value::ArrayIndex i = 0; i < resource["Instances"].size(); i++)
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
605 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
606 if (!ArchiveInstance(writer, context, resource["Instances"][i].asString()))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
607 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
608 return false;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
609 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
610 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
611 break;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
612
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
613 default:
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
614 throw OrthancException(ErrorCode_InternalError);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
615 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
616
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
617 writer.CloseDirectory();
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
618 return true;
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
619 }
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
620
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
621 template <enum ResourceType resourceType>
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
622 static void GetArchive(RestApi::GetCall& call)
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
623 {
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
624 RETRIEVE_CONTEXT(call);
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
625
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
626 // Create a RAII for the temporary file to manage the ZIP file
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
627 Toolbox::TemporaryFile tmp;
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
628 std::string id = call.GetUriComponent("id", "");
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
629
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
630 {
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
631 // Create a ZIP writer
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
632 HierarchicalZipWriter writer(tmp.GetPath().c_str());
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
633
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
634 // Store the requested resource into the ZIP
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
635 if (!ArchiveInternal(writer, context, id, resourceType, true))
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
636 {
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
637 return;
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
638 }
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
639 }
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
640
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
641 // Prepare the sending of the ZIP file
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
642 FilesystemHttpSender sender(tmp.GetPath().c_str());
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
643 sender.SetContentType("application/zip");
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
644 sender.SetDownloadFilename(id + ".zip");
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
645
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
646 // Send the ZIP
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
647 call.GetOutput().AnswerFile(sender);
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
648
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
649 // The temporary file is automatically removed thanks to the RAII
248
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
650 }
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
651
2442033911d6 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 238
diff changeset
652
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
653 // Changes API --------------------------------------------------------------
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
654
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
655 static void GetSinceAndLimit(int64_t& since,
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
656 unsigned int& limit,
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
657 bool& last,
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
658 const RestApi::GetCall& call)
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
659 {
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
660 static const unsigned int MAX_RESULTS = 100;
237
16a4ac70bd8a last change and export
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parents: 233
diff changeset
661
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
662 if (call.HasArgument("last"))
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
663 {
16a4ac70bd8a last change and export
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parents: 233
diff changeset
664 last = true;
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
665 return;
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
666 }
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
667
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
668 last = false;
16a4ac70bd8a last change and export
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parents: 233
diff changeset
669
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
670 try
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
671 {
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
672 since = boost::lexical_cast<int64_t>(call.GetArgument("since", "0"));
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
673 limit = boost::lexical_cast<unsigned int>(call.GetArgument("limit", "0"));
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
674 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
675 catch (boost::bad_lexical_cast)
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
676 {
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
677 return;
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
678 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
679
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
680 if (limit == 0 || limit > MAX_RESULTS)
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
681 {
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
682 limit = MAX_RESULTS;
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
683 }
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
684 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
685
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
686 static void GetChanges(RestApi::GetCall& call)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
687 {
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
688 RETRIEVE_CONTEXT(call);
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
689
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
690 //std::string filter = GetArgument(getArguments, "filter", "");
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
691 int64_t since;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
692 unsigned int limit;
237
16a4ac70bd8a last change and export
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parents: 233
diff changeset
693 bool last;
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
694 GetSinceAndLimit(since, limit, last, call);
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
695
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
696 Json::Value result;
237
16a4ac70bd8a last change and export
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parents: 233
diff changeset
697 if ((!last && context.GetIndex().GetChanges(result, since, limit)) ||
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
698 ( last && context.GetIndex().GetLastChange(result)))
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
699 {
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
700 call.GetOutput().AnswerJson(result);
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
701 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
702 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
703
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
704
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
705 static void DeleteChanges(RestApi::DeleteCall& call)
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
706 {
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
707 RETRIEVE_CONTEXT(call);
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
708 context.GetIndex().DeleteChanges();
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
709 call.GetOutput().AnswerBuffer("", "text/plain");
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
710 }
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
711
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
712
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
713 static void GetExports(RestApi::GetCall& call)
8098448bd827 export log
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parents: 230
diff changeset
714 {
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
715 RETRIEVE_CONTEXT(call);
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
716
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
717 int64_t since;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
718 unsigned int limit;
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
719 bool last;
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
720 GetSinceAndLimit(since, limit, last, call);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
721
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
722 Json::Value result;
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
723 if ((!last && context.GetIndex().GetExportedResources(result, since, limit)) ||
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
724 ( last && context.GetIndex().GetLastExportedResource(result)))
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
725 {
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
726 call.GetOutput().AnswerJson(result);
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
727 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
728 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 230
diff changeset
729
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
730
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
731 static void DeleteExports(RestApi::DeleteCall& call)
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
732 {
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
733 RETRIEVE_CONTEXT(call);
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
734 context.GetIndex().DeleteExportedResources();
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
735 call.GetOutput().AnswerBuffer("", "text/plain");
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
736 }
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
737
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
738
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
739 // Get information about a single patient -----------------------------------
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
740
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
741 static void IsProtectedPatient(RestApi::GetCall& call)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
742 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
743 RETRIEVE_CONTEXT(call);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
744 std::string publicId = call.GetUriComponent("id", "");
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
745 bool isProtected = context.GetIndex().IsProtectedPatient(publicId);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
746 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", "text/plain");
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
747 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
748
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
749
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
750 static void SetPatientProtection(RestApi::PutCall& call)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
751 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
752 RETRIEVE_CONTEXT(call);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
753 std::string publicId = call.GetUriComponent("id", "");
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
754 std::string s = Toolbox::StripSpaces(call.GetPutBody());
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
755
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
756 if (s == "0")
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
757 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
758 context.GetIndex().SetProtectedPatient(publicId, false);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
759 call.GetOutput().AnswerBuffer("", "text/plain");
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
760 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
761 else if (s == "1")
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
762 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
763 context.GetIndex().SetProtectedPatient(publicId, true);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
764 call.GetOutput().AnswerBuffer("", "text/plain");
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
765 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
766 else
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
767 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
768 // Bad request
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
769 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
770 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
771
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
772
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
773 // Get information about a single instance ----------------------------------
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
774
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
775 static void GetInstanceFile(RestApi::GetCall& call)
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
776 {
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
777 RETRIEVE_CONTEXT(call);
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
778
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
779 std::string publicId = call.GetUriComponent("id", "");
233
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 232
diff changeset
780 context.AnswerFile(call.GetOutput(), publicId, FileContentType_Dicom);
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
781 }
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
782
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
783
483
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
784 static void ExportInstanceFile(RestApi::PostCall& call)
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
785 {
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
786 RETRIEVE_CONTEXT(call);
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
787
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
788 std::string publicId = call.GetUriComponent("id", "");
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
789
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
790 std::string dicom;
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
791 context.ReadFile(dicom, publicId, FileContentType_Dicom);
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
792
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
793 Toolbox::WriteFile(dicom, call.GetPostBody());
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
794
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
795 call.GetOutput().AnswerBuffer("{}", "application/json");
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
796 }
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
797
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
798
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
799 template <bool simplify>
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
800 static void GetInstanceTags(RestApi::GetCall& call)
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
801 {
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
802 RETRIEVE_CONTEXT(call);
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
803
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
804 std::string publicId = call.GetUriComponent("id", "");
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
805
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
806 Json::Value full;
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
807 context.ReadJson(full, publicId);
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
808
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
809 if (simplify)
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
810 {
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
811 Json::Value simplified;
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
812 SimplifyTags(simplified, full);
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
813 call.GetOutput().AnswerJson(simplified);
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
814 }
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
815 else
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
816 {
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 225
diff changeset
817 call.GetOutput().AnswerJson(full);
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
818 }
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
819 }
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
820
214
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
821
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
822 static void ListFrames(RestApi::GetCall& call)
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
823 {
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
824 RETRIEVE_CONTEXT(call);
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
825
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
826 Json::Value instance;
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
827 if (context.GetIndex().LookupResource(instance, call.GetUriComponent("id", ""), ResourceType_Instance))
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
828 {
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
829 unsigned int numberOfFrames = 1;
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
830
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
831 try
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
832 {
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
833 Json::Value tmp = instance["MainDicomTags"]["NumberOfFrames"];
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
834 numberOfFrames = boost::lexical_cast<unsigned int>(tmp.asString());
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
835 }
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
836 catch (...)
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
837 {
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
838 }
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
839
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
840 Json::Value result = Json::arrayValue;
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
841 for (unsigned int i = 0; i < numberOfFrames; i++)
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
842 {
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
843 result.append(i);
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
844 }
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
845
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
846 call.GetOutput().AnswerJson(result);
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
847 }
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
848 }
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
849
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
850
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
851 template <enum ImageExtractionMode mode>
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
852 static void GetImage(RestApi::GetCall& call)
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
853 {
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
854 RETRIEVE_CONTEXT(call);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
855
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
856 std::string frameId = call.GetUriComponent("frame", "0");
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
857
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
858 unsigned int frame;
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
859 try
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
860 {
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
861 frame = boost::lexical_cast<unsigned int>(frameId);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
862 }
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
863 catch (boost::bad_lexical_cast)
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
864 {
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
865 return;
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
866 }
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
867
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
868 std::string publicId = call.GetUriComponent("id", "");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
869 std::string dicomContent, png;
233
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 232
diff changeset
870 context.ReadFile(dicomContent, publicId, FileContentType_Dicom);
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
871
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
872 try
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
873 {
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
874 FromDcmtkBridge::ExtractPngImage(png, dicomContent, frame, mode);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
875 call.GetOutput().AnswerBuffer(png, "image/png");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
876 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
877 catch (OrthancException& e)
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
878 {
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
879 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange)
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
880 {
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
881 // The frame number is out of the range for this DICOM
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
882 // instance, the resource is not existent
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
883 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
884 else
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
885 {
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
886 std::string root = "";
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
887 for (size_t i = 1; i < call.GetFullUri().size(); i++)
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
888 {
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
889 root += "../";
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
890 }
218
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 217
diff changeset
891
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
892 call.GetOutput().Redirect(root + "app/images/unsupported.png");
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
893 }
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
894 }
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
895 }
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
896
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
897
216
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
898 // Upload of DICOM files through HTTP ---------------------------------------
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
899
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
900 static void UploadDicomFile(RestApi::PostCall& call)
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
901 {
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
902 RETRIEVE_CONTEXT(call);
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
903
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
904 const std::string& postData = call.GetPostBody();
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
905 if (postData.size() == 0)
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
906 {
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
907 return;
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
908 }
216
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
909
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
910 LOG(INFO) << "Receiving a DICOM file of " << postData.size() << " bytes through HTTP";
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
911
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
912 std::string publicId;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
913 StoreStatus status = context.Store(publicId, postData);
216
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
914 Json::Value result = Json::objectValue;
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
915
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
916 if (status != StoreStatus_Failure)
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
917 {
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
918 result["ID"] = publicId;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
919 result["Path"] = GetBasePath(ResourceType_Instance, publicId);
216
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
920 }
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
921
434
ccf3a0a43dac EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 418
diff changeset
922 result["Status"] = EnumerationToString(status);
216
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
923 call.GetOutput().AnswerJson(result);
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
924 }
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
925
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
926
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
927
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
928 // DICOM bridge -------------------------------------------------------------
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
929
484
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
930 static bool IsExistingModality(const OrthancRestApi::SetOfStrings& modalities,
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
931 const std::string& id)
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
932 {
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
933 return modalities.find(id) != modalities.end();
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
934 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
935
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
936 static void ListModalities(RestApi::GetCall& call)
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
937 {
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
938 RETRIEVE_MODALITIES(call);
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
939
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
940 Json::Value result = Json::arrayValue;
484
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
941 for (OrthancRestApi::SetOfStrings::const_iterator
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
942 it = modalities.begin(); it != modalities.end(); it++)
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
943 {
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
944 result.append(*it);
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
945 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
946
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
947 call.GetOutput().AnswerJson(result);
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
948 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
949
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
950
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
951 static void ListModalityOperations(RestApi::GetCall& call)
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
952 {
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
953 RETRIEVE_MODALITIES(call);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
954
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
955 std::string id = call.GetUriComponent("id", "");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
956 if (IsExistingModality(modalities, id))
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
957 {
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
958 Json::Value result = Json::arrayValue;
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
959 result.append("find-patient");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
960 result.append("find-study");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
961 result.append("find-series");
499
7db04aa5104f instance-level find scu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 485
diff changeset
962 result.append("find-instance");
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
963 result.append("find");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
964 result.append("store");
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
965 call.GetOutput().AnswerJson(result);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
966 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
967 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
968
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
969
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
970
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
971 // Raw access to the DICOM tags of an instance ------------------------------
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
972
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
973 static void GetRawContent(RestApi::GetCall& call)
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
974 {
526
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 519
diff changeset
975 RETRIEVE_CONTEXT(call);
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 519
diff changeset
976 boost::mutex::scoped_lock lock(context.GetDicomFileMutex());
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
977
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
978 std::string id = call.GetUriComponent("id", "");
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
979 ParsedDicomFile& dicom = context.GetDicomFile(id);
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
980 dicom.SendPathValue(call.GetOutput(), call.GetTrailingUri());
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
981 }
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
982
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
983
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
984
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
985 // Modification of DICOM instances ------------------------------------------
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
986
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
987 namespace
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
988 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
989 typedef std::set<DicomTag> Removals;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
990 typedef std::map<DicomTag, std::string> Replacements;
350
8031f9cfe7fe removal of old code
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 349
diff changeset
991 typedef std::map< std::pair<DicomRootLevel, std::string>, std::string> UidMap;
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
992 }
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
993
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
994 static void ReplaceInstanceInternal(ParsedDicomFile& toModify,
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
995 const Removals& removals,
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
996 const Replacements& replacements,
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
997 DicomReplaceMode mode,
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
998 bool removePrivateTags)
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
999 {
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1000 if (removePrivateTags)
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1001 {
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1002 toModify.RemovePrivateTags();
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1003 }
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1004
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1005 for (Removals::const_iterator it = removals.begin();
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1006 it != removals.end(); it++)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1007 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1008 toModify.Remove(*it);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1009 }
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1010
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1011 for (Replacements::const_iterator it = replacements.begin();
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1012 it != replacements.end(); it++)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1013 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1014 toModify.Replace(it->first, it->second, mode);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1015 }
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1016
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1017 // A new SOP instance UID is automatically generated
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1018 std::string instanceUid = FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Instance);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1019 toModify.Replace(DICOM_TAG_SOP_INSTANCE_UID, instanceUid, DicomReplaceMode_InsertIfAbsent);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1020 }
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1021
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1022
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1023 static void ParseRemovals(Removals& target,
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1024 const Json::Value& removals)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1025 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1026 if (!removals.isArray())
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1027 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1028 throw OrthancException(ErrorCode_BadRequest);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1029 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1030
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1031 for (Json::Value::ArrayIndex i = 0; i < removals.size(); i++)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1032 {
357
8d3a0db39967 fix of standalone builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 351
diff changeset
1033 std::string name = removals[i].asString();
8d3a0db39967 fix of standalone builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 351
diff changeset
1034 DicomTag tag = FromDcmtkBridge::ParseTag(name);
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1035 target.insert(tag);
357
8d3a0db39967 fix of standalone builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 351
diff changeset
1036
8d3a0db39967 fix of standalone builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 351
diff changeset
1037 VLOG(1) << "Removal: " << name << " " << tag << std::endl;
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1038 }
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1039 }
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1040
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1041
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1042 static void ParseReplacements(Replacements& target,
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1043 const Json::Value& replacements)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1044 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1045 if (!replacements.isObject())
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1046 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1047 throw OrthancException(ErrorCode_BadRequest);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1048 }
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1049
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1050 Json::Value::Members members = replacements.getMemberNames();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1051 for (size_t i = 0; i < members.size(); i++)
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1052 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1053 const std::string& name = members[i];
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1054 std::string value = replacements[name].asString();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1055
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1056 DicomTag tag = FromDcmtkBridge::ParseTag(name);
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1057 target[tag] = value;
357
8d3a0db39967 fix of standalone builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 351
diff changeset
1058
8d3a0db39967 fix of standalone builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 351
diff changeset
1059 VLOG(1) << "Replacement: " << name << " " << tag << " == " << value << std::endl;
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1060 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1061 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1062
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1063
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1064 static std::string GeneratePatientName(ServerContext& context)
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1065 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1066 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence);
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1067 return "Anonymized" + boost::lexical_cast<std::string>(seq);
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1068 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1069
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1070
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1071 static void SetupAnonymization(Removals& removals,
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1072 Replacements& replacements)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1073 {
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1074 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1075 removals.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1076 //removals.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set by ReplaceInstanceInternal()
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1077 removals.insert(DicomTag(0x0008, 0x0050)); // Accession Number
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1078 removals.insert(DicomTag(0x0008, 0x0080)); // Institution Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1079 removals.insert(DicomTag(0x0008, 0x0081)); // Institution Address
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1080 removals.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1081 removals.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1082 removals.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1083 removals.insert(DicomTag(0x0008, 0x1010)); // Station Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1084 removals.insert(DicomTag(0x0008, 0x1030)); // Study Description
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1085 removals.insert(DicomTag(0x0008, 0x103e)); // Series Description
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1086 removals.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1087 removals.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1088 removals.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1089 removals.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1090 removals.insert(DicomTag(0x0008, 0x1070)); // Operators' Name
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1091 removals.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1092 removals.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1093 removals.insert(DicomTag(0x0008, 0x2111)); // Derivation Description
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1094 removals.insert(DicomTag(0x0010, 0x0010)); // Patient's Name
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1095 //removals.insert(DicomTag(0x0010, 0x0020)); // Patient ID => cf. below (*)
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1096 removals.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1097 removals.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1098 removals.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1099 removals.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1100 removals.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1101 removals.insert(DicomTag(0x0010, 0x1010)); // Patient's Age
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1102 removals.insert(DicomTag(0x0010, 0x1020)); // Patient's Size
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1103 removals.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1104 removals.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1105 removals.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1106 removals.insert(DicomTag(0x0010, 0x2180)); // Occupation
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1107 removals.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1108 removals.insert(DicomTag(0x0010, 0x4000)); // Patient Comments
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1109 removals.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1110 removals.insert(DicomTag(0x0018, 0x1030)); // Protocol Name
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1111 //removals.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => cf. below (*)
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1112 //removals.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => cf. below (*)
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1113 removals.insert(DicomTag(0x0020, 0x0010)); // Study ID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1114 removals.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1115 removals.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1116 removals.insert(DicomTag(0x0020, 0x4000)); // Image Comments
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1117 removals.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1118 removals.insert(DicomTag(0x0040, 0xa124)); // UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1119 removals.insert(DicomTag(0x0040, 0xa730)); // Content Sequence
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1120 removals.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1121 removals.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1122 removals.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1123
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1124 /**
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1125 * (*) Patient ID, Study Instance UID and Series Instance UID
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1126 * are modified by "AnonymizeInstance()" if anonymizing a single
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1127 * instance, or by "RetrieveMappedUid()" if anonymizing a
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1128 * patient/study/series.
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1129 **/
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1130
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1131
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1132 // Some more removals (from the experience of DICOM files at the CHU of Liege)
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1133 removals.insert(DicomTag(0x0010, 0x1040)); // Patient's Address
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1134 removals.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician
463
005aaeb63414 anonymization of PatientTelephoneNumbers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 446
diff changeset
1135 removals.insert(DicomTag(0x0010, 0x2154)); // PatientTelephoneNumbers
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1136
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1137 // Set the DeidentificationMethod tag
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1138 replacements.insert(std::make_pair(DicomTag(0x0012, 0x0063), "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1"));
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1139
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1140 // Set the PatientIdentityRemoved tag
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1141 replacements.insert(std::make_pair(DicomTag(0x0012, 0x0062), "YES"));
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1142 }
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1143
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1144
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1145 static bool ParseModifyRequest(Removals& removals,
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1146 Replacements& replacements,
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1147 bool& removePrivateTags,
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1148 const RestApi::PostCall& call)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1149 {
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1150 removePrivateTags = false;
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1151 Json::Value request;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1152 if (call.ParseJsonRequest(request) &&
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1153 request.isObject())
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1154 {
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1155 Json::Value removalsPart = Json::arrayValue;
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1156 Json::Value replacementsPart = Json::objectValue;
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1157
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1158 if (request.isMember("Remove"))
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1159 {
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1160 removalsPart = request["Remove"];
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1161 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1162
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1163 if (request.isMember("Replace"))
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1164 {
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1165 replacementsPart = request["Replace"];
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1166 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1167
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1168 if (request.isMember("RemovePrivateTags"))
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1169 {
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1170 removePrivateTags = true;
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1171 }
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1172
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1173 ParseRemovals(removals, removalsPart);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1174 ParseReplacements(replacements, replacementsPart);
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1175
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1176 return true;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1177 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1178 else
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1179 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1180 return false;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1181 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1182 }
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1183
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1184
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1185 static bool ParseAnonymizationRequest(Removals& removals,
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1186 Replacements& replacements,
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1187 bool& removePrivateTags,
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1188 RestApi::PostCall& call)
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1189 {
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1190 RETRIEVE_CONTEXT(call);
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1191
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1192 removePrivateTags = true;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1193
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1194 Json::Value request;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1195 if (call.ParseJsonRequest(request) &&
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1196 request.isObject())
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1197 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1198 Json::Value keepPart = Json::arrayValue;
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1199 Json::Value removalsPart = Json::arrayValue;
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1200 Json::Value replacementsPart = Json::objectValue;
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1201
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1202 if (request.isMember("Keep"))
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1203 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1204 keepPart = request["Keep"];
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1205 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1206
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1207 if (request.isMember("KeepPrivateTags"))
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1208 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1209 removePrivateTags = false;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1210 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1211
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1212 if (request.isMember("Replace"))
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1213 {
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1214 replacementsPart = request["Replace"];
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1215 }
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1216
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1217 Removals toKeep;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1218 ParseRemovals(toKeep, keepPart);
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1219
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1220 SetupAnonymization(removals, replacements);
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1221
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1222 for (Removals::iterator it = toKeep.begin(); it != toKeep.end(); it++)
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1223 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1224 removals.erase(*it);
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1225 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1226
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1227 Removals additionalRemovals;
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1228 ParseRemovals(additionalRemovals, removalsPart);
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1229
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1230 for (Removals::iterator it = additionalRemovals.begin();
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1231 it != additionalRemovals.end(); it++)
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1232 {
321
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 317
diff changeset
1233 removals.insert(*it);
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1234 }
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1235
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1236 ParseReplacements(replacements, replacementsPart);
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1237
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1238 // Generate random Patient's Name if none is specified
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1239 if (replacements.find(DicomTag(0x0010, 0x0010)) == replacements.end())
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1240 {
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1241 replacements.insert(std::make_pair(DicomTag(0x0010, 0x0010), GeneratePatientName(context)));
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1242 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1243
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1244 return true;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1245 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1246 else
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1247 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1248 return false;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1249 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1250 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1251
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1252
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1253 static void AnonymizeOrModifyInstance(Removals& removals,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1254 Replacements& replacements,
314
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1255 bool removePrivateTags,
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1256 RestApi::PostCall& call)
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 299
diff changeset
1257 {
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 299
diff changeset
1258 RETRIEVE_CONTEXT(call);
526
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 519
diff changeset
1259 boost::mutex::scoped_lock lock(context.GetDicomFileMutex());
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 299
diff changeset
1260
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 299
diff changeset
1261 std::string id = call.GetUriComponent("id", "");
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 299
diff changeset
1262 ParsedDicomFile& dicom = context.GetDicomFile(id);
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 299
diff changeset
1263
314
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1264 std::auto_ptr<ParsedDicomFile> modified(dicom.Clone());
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1265 ReplaceInstanceInternal(*modified, removals, replacements, DicomReplaceMode_InsertIfAbsent, removePrivateTags);
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1266 modified->Answer(call.GetOutput());
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1267 }
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1268
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1269
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1270 static bool RetrieveMappedUid(ParsedDicomFile& dicom,
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1271 DicomRootLevel level,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1272 Replacements& replacements,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1273 UidMap& uidMap)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1274 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1275 std::auto_ptr<DicomTag> tag;
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1276
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1277 switch (level)
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1278 {
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1279 case DicomRootLevel_Series:
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1280 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID));
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1281 break;
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1282
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1283 case DicomRootLevel_Study:
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1284 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID));
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1285 break;
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1286
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1287 case DicomRootLevel_Patient:
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1288 tag.reset(new DicomTag(DICOM_TAG_PATIENT_ID));
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1289 break;
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1290
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1291 default:
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1292 throw OrthancException(ErrorCode_InternalError);
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1293 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1294
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1295 std::string original;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1296 if (!dicom.GetTagValue(original, *tag))
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1297 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1298 throw OrthancException(ErrorCode_InternalError);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1299 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1300
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1301 std::string mapped;
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1302 bool isNew;
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1303
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1304 UidMap::const_iterator previous = uidMap.find(std::make_pair(level, original));
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1305 if (previous == uidMap.end())
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1306 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1307 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1308 uidMap.insert(std::make_pair(std::make_pair(level, original), mapped));
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1309 isNew = true;
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1310 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1311 else
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1312 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1313 mapped = previous->second;
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1314 isNew = false;
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1315 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1316
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1317 replacements[*tag] = mapped;
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1318 return isNew;
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1319 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1320
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1321
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1322 static void AnonymizeOrModifyResource(bool isAnonymization,
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1323 Removals& removals,
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1324 Replacements& replacements,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1325 bool removePrivateTags,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1326 MetadataType metadataType,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1327 ChangeType changeType,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1328 ResourceType resourceType,
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1329 RestApi::PostCall& call)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1330 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1331 typedef std::list<std::string> Instances;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1332
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1333 bool isFirst = true;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1334 Json::Value result(Json::objectValue);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1335
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1336 RETRIEVE_CONTEXT(call);
526
e318e9d49815 rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 519
diff changeset
1337 boost::mutex::scoped_lock lock(context.GetDicomFileMutex());
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1338
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1339 Instances instances;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1340 std::string id = call.GetUriComponent("id", "");
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1341 context.GetIndex().GetChildInstances(instances, id);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1342
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1343 if (instances.size() == 0)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1344 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1345 return;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1346 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1347
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1348
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1349 /**
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1350 * Loop over all the instances of the resource.
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1351 **/
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1352
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1353 UidMap uidMap;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1354 for (Instances::const_iterator it = instances.begin();
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1355 it != instances.end(); it++)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1356 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1357 LOG(INFO) << "Modifying instance " << *it;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1358 ParsedDicomFile& original = context.GetDicomFile(*it);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1359
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1360 DicomInstanceHasher originalHasher = original.GetHasher();
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1361
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1362 if (isFirst && !isAnonymization)
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1363 {
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1364 // If modifying a study or a series, keep the original patient ID.
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1365 std::string patientId = originalHasher.GetPatientId();
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1366 uidMap[std::make_pair(DicomRootLevel_Patient, patientId)] = patientId;
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1367 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1368
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1369 bool isNewSeries = RetrieveMappedUid(original, DicomRootLevel_Series, replacements, uidMap);
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1370 bool isNewStudy = RetrieveMappedUid(original, DicomRootLevel_Study, replacements, uidMap);
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1371 bool isNewPatient = RetrieveMappedUid(original, DicomRootLevel_Patient, replacements, uidMap);
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1372
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1373
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1374 /**
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1375 * Compute the resulting DICOM instance and store it into the Orthanc store.
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1376 **/
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1377
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1378 std::auto_ptr<ParsedDicomFile> modified(original.Clone());
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1379 ReplaceInstanceInternal(*modified, removals, replacements, DicomReplaceMode_InsertIfAbsent, removePrivateTags);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1380
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1381 std::string modifiedInstance;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1382 if (context.Store(modifiedInstance, modified->GetDicom()) != StoreStatus_Success)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1383 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1384 LOG(ERROR) << "Error while storing a modified instance " << *it;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1385 return;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1386 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1387
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1388
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1389 /**
443
be93b666ed79 link anonymized to original resource in OrthancExplorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1390 * Record metadata information (AnonymizedFrom/ModifiedFrom).
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1391 **/
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1392
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1393 DicomInstanceHasher modifiedHasher = modified->GetHasher();
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1394
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1395 if (isNewSeries)
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1396 {
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1397 context.GetIndex().SetMetadata(modifiedHasher.HashSeries(),
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1398 metadataType, originalHasher.HashSeries());
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1399 }
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1400
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1401 if (isNewStudy)
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1402 {
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1403 context.GetIndex().SetMetadata(modifiedHasher.HashStudy(),
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1404 metadataType, originalHasher.HashStudy());
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1405 }
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1406
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1407 if (isNewPatient)
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1408 {
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1409 context.GetIndex().SetMetadata(modifiedHasher.HashPatient(),
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1410 metadataType, originalHasher.HashPatient());
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1411 }
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1412
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1413 assert(*it == originalHasher.HashInstance());
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1414 assert(modifiedInstance == modifiedHasher.HashInstance());
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1415 context.GetIndex().SetMetadata(modifiedInstance, metadataType, *it);
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1416
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1417
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1418 /**
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1419 * Compute the JSON object that is returned by the REST call.
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1420 **/
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1421
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1422 if (isFirst)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1423 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1424 std::string newId;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1425
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1426 switch (resourceType)
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1427 {
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1428 case ResourceType_Series:
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1429 newId = modifiedHasher.HashSeries();
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1430 break;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1431
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1432 case ResourceType_Study:
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1433 newId = modifiedHasher.HashStudy();
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1434 break;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1435
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1436 case ResourceType_Patient:
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1437 newId = modifiedHasher.HashPatient();
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1438 break;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1439
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1440 default:
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1441 throw OrthancException(ErrorCode_InternalError);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1442 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1443
434
ccf3a0a43dac EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 418
diff changeset
1444 result["Type"] = EnumerationToString(resourceType);
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1445 result["ID"] = newId;
348
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1446 result["Path"] = GetBasePath(resourceType, newId);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1447 result["PatientID"] = modifiedHasher.HashPatient();
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1448 isFirst = false;
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1449 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1450 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1451
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1452 call.GetOutput().AnswerJson(result);
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1453 }
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1454
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1455
1082e8121d10 refactoring anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 344
diff changeset
1456
314
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1457 static void ModifyInstance(RestApi::PostCall& call)
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1458 {
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1459 Removals removals;
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1460 Replacements replacements;
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1461 bool removePrivateTags;
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1462
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1463 if (ParseModifyRequest(removals, replacements, removePrivateTags, call))
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1464 {
314
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1465 AnonymizeOrModifyInstance(removals, replacements, removePrivateTags, call);
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1466 }
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1467 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1468
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1469
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1470 static void AnonymizeInstance(RestApi::PostCall& call)
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1471 {
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1472 Removals removals;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1473 Replacements replacements;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1474 bool removePrivateTags;
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1475
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1476 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call))
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1477 {
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1478 // Generate random patient ID if not specified
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1479 if (replacements.find(DICOM_TAG_PATIENT_ID) == replacements.end())
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1480 {
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1481 replacements.insert(std::make_pair(DICOM_TAG_PATIENT_ID,
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1482 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Patient)));
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1483 }
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1484
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1485 // Generate random study UID if not specified
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1486 if (replacements.find(DICOM_TAG_STUDY_INSTANCE_UID) == replacements.end())
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1487 {
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1488 replacements.insert(std::make_pair(DICOM_TAG_STUDY_INSTANCE_UID,
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1489 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Study)));
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1490 }
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1491
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1492 // Generate random series UID if not specified
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1493 if (replacements.find(DICOM_TAG_SERIES_INSTANCE_UID) == replacements.end())
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1494 {
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1495 replacements.insert(std::make_pair(DICOM_TAG_SERIES_INSTANCE_UID,
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1496 FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Series)));
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1497 }
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1498
314
4f17834a50b6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 313
diff changeset
1499 AnonymizeOrModifyInstance(removals, replacements, removePrivateTags, call);
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1500 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1501 }
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1502
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1503
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1504 static void ModifySeriesInplace(RestApi::PostCall& call)
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1505 {
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1506 Removals removals;
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1507 Replacements replacements;
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1508 bool removePrivateTags;
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1509
312
1642a354fec8 flexible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1510 if (ParseModifyRequest(removals, replacements, removePrivateTags, call))
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1511 {
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1512 AnonymizeOrModifyResource(false, removals, replacements, removePrivateTags,
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1513 MetadataType_ModifiedFrom, ChangeType_ModifiedSeries,
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1514 ResourceType_Series, call);
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1515 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1516 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 314
diff changeset
1517
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1518
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1519 static void AnonymizeSeriesInplace(RestApi::PostCall& call)
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1520 {
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1521 Removals removals;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1522 Replacements replacements;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1523 bool removePrivateTags;
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1524
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1525 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call))
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1526 {
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1527 AnonymizeOrModifyResource(true, removals, replacements, removePrivateTags,
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1528 MetadataType_AnonymizedFrom, ChangeType_AnonymizedSeries,
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1529 ResourceType_Series, call);
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1530 }
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1531 }
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1532
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1533
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1534 static void ModifyStudyInplace(RestApi::PostCall& call)
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1535 {
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1536 Removals removals;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1537 Replacements replacements;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1538 bool removePrivateTags;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1539
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1540 if (ParseModifyRequest(removals, replacements, removePrivateTags, call))
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1541 {
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1542 AnonymizeOrModifyResource(false, removals, replacements, removePrivateTags,
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1543 MetadataType_ModifiedFrom, ChangeType_ModifiedStudy,
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1544 ResourceType_Study, call);
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1545 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1546 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1547
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1548
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1549 static void AnonymizeStudyInplace(RestApi::PostCall& call)
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1550 {
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1551 Removals removals;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1552 Replacements replacements;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1553 bool removePrivateTags;
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1554
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1555 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call))
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1556 {
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1557 AnonymizeOrModifyResource(true, removals, replacements, removePrivateTags,
349
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1558 MetadataType_AnonymizedFrom, ChangeType_AnonymizedStudy,
c5edf0cc6e95 switch to refactored version
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 348
diff changeset
1559 ResourceType_Study, call);
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1560 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1561 }
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1562
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1563
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1564 /*static void ModifyPatientInplace(RestApi::PostCall& call)
351
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1565 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1566 Removals removals;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1567 Replacements replacements;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1568 bool removePrivateTags;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1569
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1570 if (ParseModifyRequest(removals, replacements, removePrivateTags, call))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1571 {
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1572 AnonymizeOrModifyResource(false, removals, replacements, removePrivateTags,
351
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1573 MetadataType_ModifiedFrom, ChangeType_ModifiedPatient,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1574 ResourceType_Patient, call);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1575 }
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1576 }*/
351
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1577
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1578
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1579 static void AnonymizePatientInplace(RestApi::PostCall& call)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1580 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1581 Removals removals;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1582 Replacements replacements;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1583 bool removePrivateTags;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1584
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1585 if (ParseAnonymizationRequest(removals, replacements, removePrivateTags, call))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1586 {
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1587 AnonymizeOrModifyResource(true, removals, replacements, removePrivateTags,
351
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1588 MetadataType_AnonymizedFrom, ChangeType_AnonymizedPatient,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1589 ResourceType_Patient, call);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1590 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1591 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1592
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1593
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1594 // Handling of metadata -----------------------------------------------------
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1595
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1596 static void ListMetadata(RestApi::GetCall& call)
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1597 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1598 RETRIEVE_CONTEXT(call);
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1599
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1600 std::string publicId = call.GetUriComponent("id", "");
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1601 std::list<MetadataType> metadata;
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1602 if (context.GetIndex().ListAvailableMetadata(metadata, publicId))
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1603 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1604 Json::Value result = Json::arrayValue;
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1605
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1606 for (std::list<MetadataType>::const_iterator
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1607 it = metadata.begin(); it != metadata.end(); it++)
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1608 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1609 result.append(EnumerationToString(*it));
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1610 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1611
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1612 call.GetOutput().AnswerJson(result);
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1613 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1614 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1615
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1616
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1617 static void GetMetadata(RestApi::GetCall& call)
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1618 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1619 RETRIEVE_CONTEXT(call);
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1620
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1621 std::string publicId = call.GetUriComponent("id", "");
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1622 std::string name = call.GetUriComponent("name", "");
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1623 MetadataType metadata = StringToMetadata(name);
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1624
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1625 std::string value;
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1626 if (context.GetIndex().LookupMetadata(value, publicId, metadata))
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1627 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1628 call.GetOutput().AnswerBuffer(value, "text/plain");
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1629 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1630 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1631
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
1632
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1633 static void DeleteMetadata(RestApi::DeleteCall& call)
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1634 {
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1635 RETRIEVE_CONTEXT(call);
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1636
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1637 std::string publicId = call.GetUriComponent("id", "");
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1638 std::string name = call.GetUriComponent("name", "");
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1639 MetadataType metadata = StringToMetadata(name);
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1640
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1641 if (metadata >= MetadataType_StartUser &&
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1642 metadata <= MetadataType_EndUser)
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1643 {
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1644 // It is forbidden to modify internal metadata
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1645 context.GetIndex().DeleteMetadata(publicId, metadata);
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1646 call.GetOutput().AnswerBuffer("", "text/plain");
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1647 }
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1648 }
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1649
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1650
437
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1651 static void SetMetadata(RestApi::PutCall& call)
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1652 {
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1653 RETRIEVE_CONTEXT(call);
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1654
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1655 std::string publicId = call.GetUriComponent("id", "");
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1656 std::string name = call.GetUriComponent("name", "");
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1657 MetadataType metadata = StringToMetadata(name);
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1658 std::string value = call.GetPutBody();
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1659
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1660 if (metadata >= MetadataType_StartUser &&
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1661 metadata <= MetadataType_EndUser)
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1662 {
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1663 // It is forbidden to modify internal metadata
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1664 context.GetIndex().SetMetadata(publicId, metadata, value);
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1665 call.GetOutput().AnswerBuffer("", "text/plain");
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1666 }
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1667 }
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1668
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1669
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1670 static void GetResourceStatistics(RestApi::GetCall& call)
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1671 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1672 RETRIEVE_CONTEXT(call);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1673 std::string publicId = call.GetUriComponent("id", "");
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1674 Json::Value result;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1675 context.GetIndex().GetStatistics(result, publicId);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1676 call.GetOutput().AnswerJson(result);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1677 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1678
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1679
437
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1680
484
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1681 // Orthanc Peers ------------------------------------------------------------
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1682
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1683 static bool IsExistingPeer(const OrthancRestApi::SetOfStrings& peers,
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1684 const std::string& id)
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1685 {
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1686 return peers.find(id) != peers.end();
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1687 }
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1688
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1689 static void ListPeers(RestApi::GetCall& call)
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1690 {
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1691 RETRIEVE_PEERS(call);
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1692
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1693 Json::Value result = Json::arrayValue;
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1694 for (OrthancRestApi::SetOfStrings::const_iterator
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1695 it = peers.begin(); it != peers.end(); it++)
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1696 {
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1697 result.append(*it);
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1698 }
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1699
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1700 call.GetOutput().AnswerJson(result);
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1701 }
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1702
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1703 static void ListPeerOperations(RestApi::GetCall& call)
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1704 {
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1705 RETRIEVE_PEERS(call);
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1706
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1707 std::string id = call.GetUriComponent("id", "");
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1708 if (IsExistingPeer(peers, id))
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1709 {
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1710 Json::Value result = Json::arrayValue;
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1711 result.append("store");
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1712 call.GetOutput().AnswerJson(result);
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1713 }
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1714 }
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1715
485
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1716 static void PeerStore(RestApi::PostCall& call)
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1717 {
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1718 RETRIEVE_CONTEXT(call);
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1719
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1720 std::string remote = call.GetUriComponent("id", "");
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1721
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1722 std::list<std::string> instances;
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1723 if (!GetInstancesToExport(instances, remote, call))
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1724 {
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1725 return;
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1726 }
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1727
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1728 std::string url, username, password;
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1729 GetOrthancPeer(remote, url, username, password);
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1730
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1731 // Configure the HTTP client
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1732 HttpClient client;
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1733 if (username.size() != 0 && password.size() != 0)
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1734 {
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1735 client.SetCredentials(username.c_str(), password.c_str());
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1736 }
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1737
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1738 client.SetUrl(url + "instances");
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1739 client.SetMethod(HttpMethod_Post);
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1740
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1741 // Loop over the instances that are to be sent
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1742 for (std::list<std::string>::const_iterator
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1743 it = instances.begin(); it != instances.end(); it++)
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1744 {
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1745 LOG(INFO) << "Sending resource " << *it << " to peer \"" << remote << "\"";
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1746
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1747 context.ReadFile(client.AccessPostData(), *it, FileContentType_Dicom);
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1748
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1749 std::string answer;
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1750 if (!client.Apply(answer))
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1751 {
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1752 LOG(ERROR) << "Unable to send resource " << *it << " to peer \"" << remote << "\"";
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1753 return;
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1754 }
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1755 }
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1756
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1757 call.GetOutput().AnswerBuffer("{}", "application/json");
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1758 }
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1759
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1760
484
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1761
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1762
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1763
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1764 // Registration of the various REST handlers --------------------------------
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1765
230
ae2367145b49 renames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 229
diff changeset
1766 OrthancRestApi::OrthancRestApi(ServerContext& context) :
224
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 218
diff changeset
1767 context_(context)
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1768 {
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1769 GetListOfDicomModalities(modalities_);
484
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1770 GetListOfOrthancPeers(peers_);
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1771
211
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
1772 Register("/", ServeRoot);
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1773 Register("/system", GetSystemInformation);
238
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
1774 Register("/statistics", GetStatistics);
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1775 Register("/changes", GetChanges);
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
1776 Register("/changes", DeleteChanges);
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1777 Register("/exports", GetExports);
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 403
diff changeset
1778 Register("/exports", DeleteExports);
211
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
1779
216
e5d5d4a9a326 refactored upload of dicom through http
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 215
diff changeset
1780 Register("/instances", UploadDicomFile);
211
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
1781 Register("/instances", ListResources<ResourceType_Instance>);
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
1782 Register("/patients", ListResources<ResourceType_Patient>);
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
1783 Register("/series", ListResources<ResourceType_Series>);
b7aea293b965 list of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 210
diff changeset
1784 Register("/studies", ListResources<ResourceType_Study>);
212
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1785
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1786 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1787 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1788 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1789 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1790 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1791 Register("/series/{id}", GetSingleResource<ResourceType_Series>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1792 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>);
f276b175dcaf delete resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 211
diff changeset
1793 Register("/studies/{id}", GetSingleResource<ResourceType_Study>);
250
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
1794
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
1795 Register("/patients/{id}/archive", GetArchive<ResourceType_Patient>);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
1796 Register("/studies/{id}/archive", GetArchive<ResourceType_Study>);
f23318b11b39 creation of zip files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 249
diff changeset
1797 Register("/series/{id}/archive", GetArchive<ResourceType_Series>);
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1798
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1799 Register("/instances/{id}/statistics", GetResourceStatistics);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1800 Register("/patients/{id}/statistics", GetResourceStatistics);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1801 Register("/studies/{id}/statistics", GetResourceStatistics);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1802 Register("/series/{id}/statistics", GetResourceStatistics);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1803
437
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1804 Register("/instances/{id}/metadata", ListMetadata);
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1805 Register("/instances/{id}/metadata/{name}", DeleteMetadata);
437
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1806 Register("/instances/{id}/metadata/{name}", GetMetadata);
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1807 Register("/instances/{id}/metadata/{name}", SetMetadata);
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1808 Register("/patients/{id}/metadata", ListMetadata);
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1809 Register("/patients/{id}/metadata/{name}", DeleteMetadata);
437
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1810 Register("/patients/{id}/metadata/{name}", GetMetadata);
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1811 Register("/patients/{id}/metadata/{name}", SetMetadata);
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1812 Register("/series/{id}/metadata", ListMetadata);
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1813 Register("/series/{id}/metadata/{name}", DeleteMetadata);
437
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1814 Register("/series/{id}/metadata/{name}", GetMetadata);
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1815 Register("/series/{id}/metadata/{name}", SetMetadata);
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1816 Register("/studies/{id}/metadata", ListMetadata);
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 437
diff changeset
1817 Register("/studies/{id}/metadata/{name}", DeleteMetadata);
437
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1818 Register("/studies/{id}/metadata/{name}", GetMetadata);
beca6747945e PUT on metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1819 Register("/studies/{id}/metadata/{name}", SetMetadata);
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1820
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
1821 Register("/patients/{id}/protected", IsProtectedPatient);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 253
diff changeset
1822 Register("/patients/{id}/protected", SetPatientProtection);
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1823 Register("/instances/{id}/file", GetInstanceFile);
483
8c3573d28868 export dicom instances to the filesystem
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
1824 Register("/instances/{id}/export", ExportInstanceFile);
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1825 Register("/instances/{id}/tags", GetInstanceTags<false>);
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1826 Register("/instances/{id}/simplified-tags", GetInstanceTags<true>);
214
03817919169b list of frames
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 213
diff changeset
1827 Register("/instances/{id}/frames", ListFrames);
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 272
diff changeset
1828 Register("/instances/{id}/content/*", GetRawContent);
213
4ce7fdcc8879 access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
1829
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1830 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1831 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1832 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>);
465
7a966b440f19 signed images to PNG
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 463
diff changeset
1833 Register("/instances/{id}/frames/{frame}/image-int16", GetImage<ImageExtractionMode_Int16>);
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1834 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1835 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>);
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1836 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>);
465
7a966b440f19 signed images to PNG
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 463
diff changeset
1837 Register("/instances/{id}/image-int16", GetImage<ImageExtractionMode_Int16>);
215
c07170f3f4f7 refactoring of access to images in REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 214
diff changeset
1838
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1839 Register("/modalities", ListModalities);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1840 Register("/modalities/{id}", ListModalityOperations);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1841 Register("/modalities/{id}/find-patient", DicomFindPatient);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1842 Register("/modalities/{id}/find-study", DicomFindStudy);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1843 Register("/modalities/{id}/find-series", DicomFindSeries);
499
7db04aa5104f instance-level find scu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 485
diff changeset
1844 Register("/modalities/{id}/find-instance", DicomFindInstance);
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1845 Register("/modalities/{id}/find", DicomFind);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1846 Register("/modalities/{id}/store", DicomStore);
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1847
484
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1848 Register("/peers", ListPeers);
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1849 Register("/peers/{id}", ListPeerOperations);
485
bdbde1fbfab3 send resources through HTTP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 484
diff changeset
1850 Register("/peers/{id}/store", PeerStore);
484
b8ace6fc1d1f preparation for handling Orthanc peers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 483
diff changeset
1851
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1852 Register("/instances/{id}/modify", ModifyInstance);
308
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1853 Register("/series/{id}/modify", ModifySeriesInplace);
fbf2b2282086 inplace modification of series and studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 307
diff changeset
1854 Register("/studies/{id}/modify", ModifyStudyInplace);
515
a8be42bcf2bb Link from modified to original resource in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 499
diff changeset
1855 //Register("/patients/{id}/modify", ModifyPatientInplace);
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1856
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1857 Register("/instances/{id}/anonymize", AnonymizeInstance);
316
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1858 Register("/series/{id}/anonymize", AnonymizeSeriesInplace);
d526ac73c886 anonymization of studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1859 Register("/studies/{id}/anonymize", AnonymizeStudyInplace);
351
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 350
diff changeset
1860 Register("/patients/{id}/anonymize", AnonymizePatientInplace);
342
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
1861
a58a8be26aff generation of random uid in the rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 321
diff changeset
1862 Register("/tools/generate-uid", GenerateUid);
418
b79bf2f4ab2e execution of lua through REST
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 413
diff changeset
1863 Register("/tools/execute-script", ExecuteScript);
446
b7ef1a7d857e /tools/now
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 443
diff changeset
1864 Register("/tools/now", GetNowIsoString);
210
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1865 }
96b7918a6a18 start of the refactoring of the Orthanc REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1866 }