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annotate OrthancFramework/Sources/DicomParsing/ParsedDicomFile.h @ 4145:c5cdb6dc6865

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New config option "Worklist.LimitAnswers" for the sample modality worklist plugin
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 17 Aug 2020 14:48:11 +0200
parents 0ddc5297a8ab
children fbc49a65340a
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #pragma once
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24
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25 #include "../OrthancFramework.h"
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26
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27 #if !defined(ORTHANC_ENABLE_JPEG)
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28 # error Macro ORTHANC_ENABLE_JPEG must be defined to use this file
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29 #endif
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30
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31 #if !defined(ORTHANC_ENABLE_PNG)
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32 # error Macro ORTHANC_ENABLE_PNG must be defined to use this file
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33 #endif
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34
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35 #if !defined(ORTHANC_ENABLE_CIVETWEB)
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36 # error Macro ORTHANC_ENABLE_CIVETWEB must be defined to use this file
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37 #endif
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38
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39 #if !defined(ORTHANC_ENABLE_MONGOOSE)
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40 # error Macro ORTHANC_ENABLE_MONGOOSE must be defined to use this file
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41 #endif
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42
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43 #if !defined(ORTHANC_SANDBOXED)
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44 # error The macro ORTHANC_SANDBOXED must be defined
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45 #endif
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46
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47 #if !defined(ORTHANC_ENABLE_DCMTK)
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48 # error The macro ORTHANC_ENABLE_DCMTK must be defined
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49 #endif
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50
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51 #if ORTHANC_ENABLE_DCMTK != 1
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52 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 to use this file
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53 #endif
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54
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55 #include "ITagVisitor.h"
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56 #include "../DicomFormat/DicomInstanceHasher.h"
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57 #include "../Images/ImageAccessor.h"
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58 #include "../IDynamicObject.h"
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59 #include "../Toolbox.h"
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60
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61 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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62 # include "../RestApi/RestApiOutput.h"
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63 #endif
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64
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65 #include <boost/shared_ptr.hpp>
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67
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68 class DcmDataset;
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69 class DcmFileFormat;
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70
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71 namespace Orthanc
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72 {
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73 class ORTHANC_PUBLIC ParsedDicomFile : public IDynamicObject
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74 {
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75 private:
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76 struct PImpl;
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77 boost::shared_ptr<PImpl> pimpl_;
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79 ParsedDicomFile(ParsedDicomFile& other,
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80 bool keepSopInstanceUid);
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81
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82 void CreateFromDicomMap(const DicomMap& source,
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83 Encoding defaultEncoding,
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84 bool permissive,
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85 const std::string& defaultPrivateCreator,
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86 const std::map<uint16_t, std::string>& privateCreators);
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87
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88 void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep);
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89
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90 void UpdateStorageUid(const DicomTag& tag,
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91 const std::string& value,
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92 bool decodeDataUriScheme);
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93
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94 void InvalidateCache();
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95
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96 bool EmbedContentInternal(const std::string& dataUriScheme);
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98 ParsedDicomFile(DcmFileFormat* dicom); // This takes ownership (no clone)
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99
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100 public:
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101 ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance
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102
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103 ParsedDicomFile(const DicomMap& map,
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104 Encoding defaultEncoding,
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105 bool permissive
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106 );
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107
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108 ParsedDicomFile(const DicomMap& map,
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109 Encoding defaultEncoding,
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110 bool permissive,
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111 const std::string& defaultPrivateCreator,
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112 const std::map<uint16_t, std::string>& privateCreators);
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113
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114 ParsedDicomFile(const void* content,
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115 size_t size);
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116
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117 ParsedDicomFile(const std::string& content);
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118
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119 ParsedDicomFile(DcmDataset& dicom); // This clones the DCMTK object
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120
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121 ParsedDicomFile(DcmFileFormat& dicom); // This clones the DCMTK object
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122
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123 static ParsedDicomFile* AcquireDcmtkObject(DcmFileFormat* dicom) // No clone here
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124 {
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125 return new ParsedDicomFile(dicom);
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126 }
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127
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128 DcmFileFormat& GetDcmtkObject() const;
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129
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130 // The "ParsedDicomFile" object cannot be used after calling this method
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131 DcmFileFormat* ReleaseDcmtkObject();
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132
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133 ParsedDicomFile* Clone(bool keepSopInstanceUid);
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134
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135 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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136 void SendPathValue(RestApiOutput& output,
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137 const UriComponents& uri);
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138
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139 void Answer(RestApiOutput& output);
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140 #endif
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141
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142 void Remove(const DicomTag& tag);
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143
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144 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization)
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145 void Clear(const DicomTag& tag,
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146 bool onlyIfExists);
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147
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148 void Replace(const DicomTag& tag,
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149 const std::string& utf8Value,
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150 bool decodeDataUriScheme,
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151 DicomReplaceMode mode,
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152 const std::string& privateCreator /* used only for private tags */);
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153
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154 void Replace(const DicomTag& tag,
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155 const Json::Value& value, // Assumed to be encoded with UTF-8
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156 bool decodeDataUriScheme,
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157 DicomReplaceMode mode,
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158 const std::string& privateCreator /* used only for private tags */);
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159
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160 void Insert(const DicomTag& tag,
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161 const Json::Value& value, // Assumed to be encoded with UTF-8
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162 bool decodeDataUriScheme,
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163 const std::string& privateCreator /* used only for private tags */);
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164
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165 // Cannot be applied to private tags
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166 void ReplacePlainString(const DicomTag& tag,
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167 const std::string& utf8Value);
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168
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169 // Cannot be applied to private tags
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170 void SetIfAbsent(const DicomTag& tag,
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171 const std::string& utf8Value);
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172
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173 void RemovePrivateTags()
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174 {
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175 RemovePrivateTagsInternal(NULL);
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176 }
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177
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178 void RemovePrivateTags(const std::set<DicomTag>& toKeep)
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179 {
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180 RemovePrivateTagsInternal(&toKeep);
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181 }
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182
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183 // WARNING: This function handles the decoding of strings to UTF8
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184 bool GetTagValue(std::string& value,
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185 const DicomTag& tag);
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186
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187 DicomInstanceHasher GetHasher();
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188
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189 void SaveToMemoryBuffer(std::string& buffer);
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190
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191 #if ORTHANC_SANDBOXED == 0
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192 void SaveToFile(const std::string& path);
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193 #endif
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194
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195 void EmbedContent(const std::string& dataUriScheme);
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196
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197 void EmbedImage(const ImageAccessor& accessor);
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198
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199 void EmbedImage(MimeType mime,
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200 const std::string& content);
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201
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202 Encoding DetectEncoding(bool& hasCodeExtensions) const;
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203
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204 // WARNING: This function only sets the encoding, it will not
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205 // convert the encoding of the tags. Use "ChangeEncoding()" if need be.
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206 void SetEncoding(Encoding encoding);
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207
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diff changeset
208 void DatasetToJson(Json::Value& target,
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209 DicomToJsonFormat format,
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210 DicomToJsonFlags flags,
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diff changeset
211 unsigned int maxStringLength);
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diff changeset
212
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diff changeset
213 void DatasetToJson(Json::Value& target,
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214 DicomToJsonFormat format,
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215 DicomToJsonFlags flags,
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diff changeset
216 unsigned int maxStringLength,
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217 const std::set<DicomTag>& ignoreTagLength);
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218
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219 void HeaderToJson(Json::Value& target,
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220 DicomToJsonFormat format);
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221
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diff changeset
222 bool HasTag(const DicomTag& tag) const;
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223
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224 void EmbedPdf(const std::string& pdf);
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225
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diff changeset
226 bool ExtractPdf(std::string& pdf);
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227
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diff changeset
228 void GetRawFrame(std::string& target, // OUT
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229 MimeType& mime, // OUT
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diff changeset
230 unsigned int frameId); // IN
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diff changeset
231
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diff changeset
232 unsigned int GetFramesCount() const;
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diff changeset
233
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diff changeset
234 static ParsedDicomFile* CreateFromJson(const Json::Value& value,
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235 DicomFromJsonFlags flags,
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diff changeset
236 const std::string& privateCreator);
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237
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diff changeset
238 void ChangeEncoding(Encoding target);
2209
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diff changeset
239
4139
a4f28efdfccf "maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
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diff changeset
240 /**
a4f28efdfccf "maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
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241 * The DICOM tags with a string whose size is greater than
a4f28efdfccf "maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
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242 * "maxTagLength", are replaced by a DicomValue whose type is
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243 * "DicomValue_Null". If "maxTagLength" is zero, all the leaf tags
a4f28efdfccf "maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
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244 * are included, independently of their length.
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245 **/
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246 void ExtractDicomSummary(DicomMap& target,
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247 unsigned int maxTagLength) const;
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248
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249 /**
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250 * This flavor can be used to bypass the "maxTagLength" limitation
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251 * on a selected set of DICOM tags.
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252 **/
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253 void ExtractDicomSummary(DicomMap& target,
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254 unsigned int maxTagLength,
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255 const std::set<DicomTag>& ignoreTagLength) const;
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256
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257 bool LookupTransferSyntax(std::string& result);
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258
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259 bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const;
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260
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261 void Apply(ITagVisitor& visitor);
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262 };
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263 }