Mercurial > hg > orthanc

annotate OrthancServer/Sources/ServerJobs/MergeStudyJob.cpp @ 5453:b750777c36a2

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fix
author Alain Mazy <am@osimis.io>
date Wed, 06 Dec 2023 14:19:59 +0100
parents 0ea402b4d901
children 48b8dae6dc77
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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23 #include "MergeStudyJob.h"
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24
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25 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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26 #include "../../../OrthancFramework/Sources/Logging.h"
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27 #include "../../../OrthancFramework/Sources/SerializationToolbox.h"
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28 #include "../OrthancConfiguration.h"
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29 #include "../ServerContext.h"
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32 namespace Orthanc
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33 {
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34 static void RegisterSeries(std::map<std::string, std::string>& target,
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35 const std::string& series)
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36 {
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37 // Generate a target SeriesInstanceUID for this series
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38 if (target.find(series) == target.end())
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39 {
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40 target[series] = FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series);
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41 }
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42 }
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45 void MergeStudyJob::AddSourceSeriesInternal(const std::string& series)
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46 {
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47 RegisterSeries(seriesUidMap_, series);
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49 // Add all the instances of the series as to be processed
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50 std::list<std::string> instances;
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51 GetContext().GetIndex().GetChildren(instances, series);
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52
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53 for (std::list<std::string>::const_iterator
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54 it = instances.begin(); it != instances.end(); ++it)
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55 {
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56 AddInstance(*it);
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57 }
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58 }
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61 void MergeStudyJob::AddSourceStudyInternal(const std::string& study)
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62 {
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63 if (study == targetStudy_)
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64 {
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65 throw OrthancException(ErrorCode_UnknownResource,
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66 "Cannot merge a study into the same study: " + study);
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67 }
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68 else
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69 {
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70 std::list<std::string> series;
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71 GetContext().GetIndex().GetChildren(series, study);
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72
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73 for (std::list<std::string>::const_iterator
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74 it = series.begin(); it != series.end(); ++it)
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75 {
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76 AddSourceSeriesInternal(*it);
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77 }
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78 }
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79 }
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80
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81
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82 bool MergeStudyJob::HandleInstance(const std::string& instance)
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83 {
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84 if (!HasTrailingStep())
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85 {
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86 throw OrthancException(ErrorCode_BadSequenceOfCalls,
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87 "AddTrailingStep() should have been called after AddSourceXXX()");
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88 }
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89
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90 /**
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91 * Retrieve the DICOM instance to be modified
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92 **/
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93
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94 std::unique_ptr<ParsedDicomFile> modified;
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95
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96 try
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97 {
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98 ServerContext::DicomCacheLocker locker(GetContext(), instance);
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99 modified.reset(locker.GetDicom().Clone(true));
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100 }
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101 catch (OrthancException&)
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102 {
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103 LOG(WARNING) << "An instance was removed after the job was issued: " << instance;
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104 return false;
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105 }
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106
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107
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108 /**
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109 * Chose the target UIDs
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110 **/
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111
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112 std::string series = modified->GetHasher().HashSeries();
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113
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114 SeriesUidMap::const_iterator targetSeriesUid = seriesUidMap_.find(series);
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115
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116 if (targetSeriesUid == seriesUidMap_.end())
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117 {
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118 throw OrthancException(ErrorCode_BadFileFormat); // Should never happen
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119 }
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120
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121
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122 /**
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123 * Copy the tags from the "Patient Module Attributes" and "General
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124 * Study Module Attributes" modules of the target study
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125 **/
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126
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127 for (std::set<DicomTag>::const_iterator it = removals_.begin();
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128 it != removals_.end(); ++it)
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129 {
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130 modified->Remove(*it);
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131 }
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132
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133 for (Replacements::const_iterator it = replacements_.begin();
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134 it != replacements_.end(); ++it)
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135 {
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136 modified->ReplacePlainString(it->first, it->second);
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137 }
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138
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139
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140 /**
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141 * Store the new instance into Orthanc
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142 **/
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143
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144 modified->ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, targetSeriesUid->second);
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145
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146 // Fix since Orthanc 1.5.8: Assign new "SOPInstanceUID", as the instance has been modified
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147 modified->ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
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148
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149 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*modified));
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150 toStore->SetOrigin(origin_);
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151
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152 std::string modifiedInstance;
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153 ServerContext::StoreResult result = GetContext().Store(modifiedInstance, *toStore, StoreInstanceMode_Default);
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154 if (result.GetStatus() != StoreStatus_Success)
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155 {
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156 LOG(ERROR) << "Error while storing a modified instance " << instance;
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157 return false;
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158 }
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159
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160 return true;
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161 }
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162
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163
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164 MergeStudyJob::MergeStudyJob(ServerContext& context,
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165 const std::string& targetStudy) :
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166 CleaningInstancesJob(context, false /* by default, remove source instances */),
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167 targetStudy_(targetStudy)
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168 {
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169 /**
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170 * Check the validity of the input ID
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171 **/
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172
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173 ResourceType type;
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174
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175 if (!GetContext().GetIndex().LookupResourceType(type, targetStudy) ||
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176 type != ResourceType_Study)
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177 {
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178 throw OrthancException(ErrorCode_UnknownResource,
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179 "Cannot merge into an unknown study: " + targetStudy);
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180 }
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181
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182
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183 /**
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184 * Detect the tags to be removed/replaced by parsing one child
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185 * instance of the study
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186 **/
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187
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188 DicomTag::AddTagsForModule(removals_, DicomModule_Patient);
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189 DicomTag::AddTagsForModule(removals_, DicomModule_Study);
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190
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191 std::list<std::string> instances;
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192 GetContext().GetIndex().GetChildInstances(instances, targetStudy);
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193
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194 if (instances.empty())
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195 {
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196 throw OrthancException(ErrorCode_UnknownResource);
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197 }
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198
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199 DicomMap dicom;
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200
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201 {
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202 ServerContext::DicomCacheLocker locker(GetContext(), instances.front());
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0ddc5297a8ab centralization of default parameters for JSON/DicomMap conversions from DCMTK
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203 OrthancConfiguration::DefaultExtractDicomSummary(dicom, locker.GetDicom());
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204 }
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205
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206 const std::set<DicomTag> moduleTags = removals_;
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207 for (std::set<DicomTag>::const_iterator it = moduleTags.begin();
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208 it != moduleTags.end(); ++it)
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209 {
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210 const DicomValue* value = dicom.TestAndGetValue(*it);
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211 std::string str;
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212
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213 if (value != NULL &&
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214 value->CopyToString(str, false))
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215 {
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216 removals_.erase(*it);
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217 replacements_.insert(std::make_pair(*it, str));
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218 }
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219 }
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220 }
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221
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222
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223 void MergeStudyJob::SetOrigin(const DicomInstanceOrigin& origin)
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224 {
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225 if (IsStarted())
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226 {
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227 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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228 }
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229 else
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230 {
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diff changeset
231 origin_ = origin;
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232 }
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233 }
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234
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235
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236 void MergeStudyJob::SetOrigin(const RestApiCall& call)
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237 {
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diff changeset
238 SetOrigin(DicomInstanceOrigin::FromRest(call));
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239 }
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240
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241
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fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
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diff changeset
242 void MergeStudyJob::AddSource(const std::string& publicId)
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243 {
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244 ResourceType level;
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245
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diff changeset
246 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
248 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
249 }
4715
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
250 else if (!GetContext().GetIndex().LookupResourceType(level, publicId))
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251 {
2955
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parents: 2860
diff changeset
252 throw OrthancException(ErrorCode_UnknownResource,
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
253 "Cannot find this resource: " + publicId);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
254 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
255 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 switch (level)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 case ResourceType_Study:
4715
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
260 AddSourceStudyInternal(publicId);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263 case ResourceType_Series:
4715
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parents: 4508
diff changeset
264 AddSourceSeries(publicId);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
265 break;
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
266
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
267 case ResourceType_Instance:
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
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diff changeset
268 AddSourceInstance(publicId);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
269 break;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271 default:
2955
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diff changeset
272 throw OrthancException(ErrorCode_UnknownResource,
4715
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parents: 4508
diff changeset
273 "This resource is neither a study, nor a series, nor an instance: " +
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
274 publicId + " is a " + std::string(EnumerationToString(level)));
2853
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 void MergeStudyJob::AddSourceSeries(const std::string& series)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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parents:
diff changeset
281 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
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diff changeset
282 std::string parent;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 }
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
288 else if (!GetContext().GetIndex().LookupParent(parent, series, ResourceType_Study))
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
289 {
2955
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290 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
291 "This resource is not a series: " + series);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
293 else if (parent == targetStudy_)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
294 {
2955
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diff changeset
295 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
296 "Cannot merge series " + series +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
297 " into its parent study " + targetStudy_);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
298 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
299 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
300 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
301 AddSourceSeriesInternal(series);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
305
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
306 void MergeStudyJob::AddSourceStudy(const std::string& study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
307 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308 ResourceType actualLevel;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310 if (IsStarted())
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 throw OrthancException(ErrorCode_BadSequenceOfCalls);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313 }
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
314 else if (!GetContext().GetIndex().LookupResourceType(actualLevel, study) ||
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315 actualLevel != ResourceType_Study)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
317 throw OrthancException(ErrorCode_UnknownResource,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2860
diff changeset
318 "This resource is not a study: " + study);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320 else
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 AddSourceStudyInternal(study);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
327 void MergeStudyJob::AddSourceInstance(const std::string& instance)
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
328 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
329 std::string parentStudy, parentSeries;
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
330
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
331 if (IsStarted())
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
332 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
333 throw OrthancException(ErrorCode_BadSequenceOfCalls);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
334 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
335 else if (!GetContext().GetIndex().LookupParent(parentSeries, instance, ResourceType_Series) ||
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
336 !GetContext().GetIndex().LookupParent(parentStudy, parentSeries, ResourceType_Study))
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
337 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
338 throw OrthancException(ErrorCode_UnknownResource,
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
339 "This resource is not an instance: " + instance);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
340 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
341 else if (parentStudy == targetStudy_)
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
342 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
343 throw OrthancException(ErrorCode_UnknownResource,
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
344 "Cannot merge instance " + instance +
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
345 " into its parent study " + targetStudy_);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
346 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
347 else
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
348 {
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
349 RegisterSeries(seriesUidMap_, parentSeries);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
350 AddInstance(instance);
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
351 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
352 }
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
353
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
354
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
355 void MergeStudyJob::GetPublicContent(Json::Value& value)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
357 CleaningInstancesJob::GetPublicContent(value);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
358 value["TargetStudy"] = targetStudy_;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362 static const char* TARGET_STUDY = "TargetStudy";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 static const char* REPLACEMENTS = "Replacements";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 static const char* REMOVALS = "Removals";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 static const char* SERIES_UID_MAP = "SeriesUIDMap";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 static const char* ORIGIN = "Origin";
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 MergeStudyJob::MergeStudyJob(ServerContext& context,
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 const Json::Value& serialized) :
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
371 CleaningInstancesJob(context, serialized,
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3940
diff changeset
372 false /* by default, remove source instances */) // (*)
2853
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373 {
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374 if (!HasTrailingStep())
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375 {
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376 // Should have been set by (*)
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377 throw OrthancException(ErrorCode_InternalError);
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378 }
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379
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380 targetStudy_ = SerializationToolbox::ReadString(serialized, TARGET_STUDY);
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381 SerializationToolbox::ReadMapOfTags(replacements_, serialized, REPLACEMENTS);
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382 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS);
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383 SerializationToolbox::ReadMapOfStrings(seriesUidMap_, serialized, SERIES_UID_MAP);
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384 origin_ = DicomInstanceOrigin(serialized[ORIGIN]);
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385 }
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386
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387
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388 bool MergeStudyJob::Serialize(Json::Value& target)
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389 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
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390 if (!CleaningInstancesJob::Serialize(target))
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391 {
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392 return false;
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393 }
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394 else
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395 {
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396 target[TARGET_STUDY] = targetStudy_;
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397 SerializationToolbox::WriteMapOfTags(target, replacements_, REPLACEMENTS);
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398 SerializationToolbox::WriteSetOfTags(target, removals_, REMOVALS);
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399 SerializationToolbox::WriteMapOfStrings(target, seriesUidMap_, SERIES_UID_MAP);
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400 origin_.Serialize(target[ORIGIN]);
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401
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402 return true;
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403 }
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404 }
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405 }