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annotate OrthancFramework/Sources/DicomFormat/DicomMap.h @ 5855:aeb9f63923b1 find-refactoring

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ignore tags from meta header in RequestedTags
author Alain Mazy <am@orthanc.team>
date Mon, 04 Nov 2024 20:00:42 +0100
parents 9990b4140c1c
children
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU Lesser General Public License
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11 * as published by the Free Software Foundation, either version 3 of
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12 * the License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * Lesser General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU Lesser General Public
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20 * License along with this program. If not, see
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21 * <http://www.gnu.org/licenses/>.
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22 **/
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25 #pragma once
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27 #include "DicomTag.h"
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28 #include "DicomValue.h"
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29 #include "../Enumerations.h"
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30
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31 #include <set>
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32 #include <map>
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33 #include <json/value.h>
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34
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35 namespace Orthanc
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36 {
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37 class ORTHANC_PUBLIC DicomMap : public boost::noncopyable
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38 {
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39 public:
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40 typedef std::map<DicomTag, DicomValue*> Content;
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41
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42 private:
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43 class MainDicomTagsConfiguration;
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44 friend class DicomArray;
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45 friend class FromDcmtkBridge;
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46 friend class ParsedDicomFile;
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47
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48 Content content_;
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50 // Warning: This takes the ownership of "value"
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51 void SetValueInternal(uint16_t group,
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52 uint16_t element,
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53 DicomValue* value);
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55 public:
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56 ~DicomMap();
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57
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58 static void ResetDefaultMainDicomTags();
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60 size_t GetSize() const;
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62 DicomMap* Clone() const;
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64 void Assign(const DicomMap& other);
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66 void Clear();
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67
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68 void SetNullValue(uint16_t group,
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69 uint16_t element);
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71 void SetNullValue(const DicomTag& tag);
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73 void SetValue(uint16_t group,
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74 uint16_t element,
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75 const DicomValue& value);
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77 void SetValue(const DicomTag& tag,
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78 const DicomValue& value);
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80 void SetValue(const DicomTag& tag,
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81 const std::string& str,
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82 bool isBinary);
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84 void SetValue(uint16_t group,
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85 uint16_t element,
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86 const std::string& str,
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87 bool isBinary);
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89 void SetSequenceValue(const DicomTag& tag,
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90 const Json::Value& value);
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92 bool HasTag(uint16_t group, uint16_t element) const;
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94 bool HasTag(const DicomTag& tag) const;
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96 const DicomValue& GetValue(uint16_t group, uint16_t element) const;
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98 const DicomValue& GetValue(const DicomTag& tag) const;
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99
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100 // DO NOT delete the returned value!
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101 const DicomValue* TestAndGetValue(uint16_t group, uint16_t element) const;
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102
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103 // DO NOT delete the returned value!
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104 const DicomValue* TestAndGetValue(const DicomTag& tag) const;
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105
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106 void Remove(const DicomTag& tag);
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107
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108 void RemoveTags(const std::set<DicomTag>& tags);
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109
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110 void ExtractPatientInformation(DicomMap& result) const;
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111
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112 void ExtractStudyInformation(DicomMap& result) const;
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113
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114 void ExtractSeriesInformation(DicomMap& result) const;
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115
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116 void ExtractInstanceInformation(DicomMap& result) const;
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117
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118 void ExtractResourceInformation(DicomMap& result, ResourceType level) const;
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119
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120 void ExtractTags(DicomMap& result, const std::set<DicomTag>& tags) const;
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121
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122 void ExtractSequences(DicomMap& result) const;
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123
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124 static void SetupFindPatientTemplate(DicomMap& result);
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125
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126 static void SetupFindStudyTemplate(DicomMap& result);
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127
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128 static void SetupFindSeriesTemplate(DicomMap& result);
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129
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130 static void SetupFindInstanceTemplate(DicomMap& result);
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131
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132 bool CopyTagIfExists(const DicomMap& source,
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133 const DicomTag& tag);
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134
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135 static bool IsMainDicomTag(const DicomTag& tag, ResourceType level);
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136
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137 static bool IsMainDicomTag(const DicomTag& tag);
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138
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139 static bool IsComputedTag(const DicomTag& tag, ResourceType level);
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140
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141 static bool IsComputedTag(const DicomTag& tag);
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142
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143 static bool HasOnlyComputedTags(const std::set<DicomTag>& tags);
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144
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145 static bool HasComputedTags(const std::set<DicomTag>& tags, ResourceType level);
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146
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147 static bool HasComputedTags(const std::set<DicomTag>& tags);
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148
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149 static bool HasMetaInformationTags(const std::set<DicomTag>& tags);
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150
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151 static void GetMainDicomTags(std::set<DicomTag>& target,
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152 ResourceType level);
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153
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154 // returns a string uniquely identifying the list of main dicom tags for a level
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155 static std::string GetMainDicomTagsSignature(ResourceType level);
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156
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157 static std::string GetDefaultMainDicomTagsSignatureFrom1_11(ResourceType level);
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158
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159 static void GetAllMainDicomTags(std::set<DicomTag>& target);
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160
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161 // adds a main dicom tag to the definition of main dicom tags for each level.
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162 // this should be done once at startup before you use MainDicomTags methods
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163 static void AddMainDicomTag(const DicomTag& tag, ResourceType level);
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164
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165 void GetTags(std::set<DicomTag>& tags) const;
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166
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167 static bool IsDicomFile(const void* dicom,
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168 size_t size);
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169
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170 static bool ParseDicomMetaInformation(DicomMap& result,
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171 const void* dicom,
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172 size_t size);
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173
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174 void LogMissingTagsForStore() const;
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175
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176 static void LogMissingTagsForStore(const std::string& patientId,
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177 const std::string& studyInstanceUid,
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178 const std::string& seriesInstanceUid,
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179 const std::string& sopInstanceUid);
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180
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181 bool LookupStringValue(std::string& result,
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182 const DicomTag& tag,
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183 bool allowBinary) const;
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184
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185 bool ParseInteger32(int32_t& result,
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186 const DicomTag& tag) const;
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187
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188 bool ParseInteger64(int64_t& result,
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189 const DicomTag& tag) const;
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190
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191 bool ParseUnsignedInteger32(uint32_t& result,
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192 const DicomTag& tag) const;
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193
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194 bool ParseUnsignedInteger64(uint64_t& result,
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195 const DicomTag& tag) const;
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196
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197 bool ParseFloat(float& result,
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198 const DicomTag& tag) const;
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199
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200 bool ParseFirstFloat(float& result,
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201 const DicomTag& tag) const;
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202
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203 bool ParseDouble(double& result,
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204 const DicomTag& tag) const;
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205
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206 void FromDicomAsJson(const Json::Value& dicomAsJson,
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207 bool append = false,
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208 bool parseSequences = false);
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209
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210 void Merge(const DicomMap& other);
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211
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212 void MergeMainDicomTags(const DicomMap& other,
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213 ResourceType level);
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214
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215 void ExtractMainDicomTags(const DicomMap& other);
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216
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217 bool HasOnlyMainDicomTags() const;
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218
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219 void Serialize(Json::Value& target) const;
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220
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221 void Unserialize(const Json::Value& source);
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222
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223 void FromDicomWeb(const Json::Value& source);
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224
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225 std::string GetStringValue(const DicomTag& tag,
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226 const std::string& defaultValue,
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227 bool allowBinary) const;
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228
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229 void RemoveBinaryTags();
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230
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231 void RemoveSequences();
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232
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233 void DumpMainDicomTags(Json::Value& target,
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234 ResourceType level) const;
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235
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236 ValueRepresentation GuessPixelDataValueRepresentation(DicomTransferSyntax transferSyntax) const;
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237
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238 void Print(FILE* fp) const; // For debugging only
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239 };
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240 }