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annotate OrthancFramework/Sources/DicomFormat/DicomMap.h @ 5044:6fed78e13233

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Refactored DicomMap to handle sequences when needed
author Alain Mazy <am@osimis.io>
date Tue, 28 Jun 2022 17:45:09 +0200
parents 1c08cd68250a
children 48005e522bd6
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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24 #pragma once
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26 #include "DicomTag.h"
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27 #include "DicomValue.h"
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28 #include "../Enumerations.h"
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29
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30 #include <set>
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31 #include <map>
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32 #include <json/value.h>
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33
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34 #if ORTHANC_BUILD_UNIT_TESTS == 1
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35 # include <gtest/gtest_prod.h>
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36 #endif
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37
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38 namespace Orthanc
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39 {
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40 class ORTHANC_PUBLIC DicomMap : public boost::noncopyable
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41 {
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42 public:
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43 typedef std::map<DicomTag, DicomValue*> Content;
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44
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45 private:
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46 class MainDicomTagsConfiguration;
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47 friend class DicomArray;
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48 friend class FromDcmtkBridge;
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49 friend class ParsedDicomFile;
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51 #if ORTHANC_BUILD_UNIT_TESTS == 1
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52 friend class DicomMapMainTagsTests;
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53 #endif
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54
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55 Content content_;
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57 // Warning: This takes the ownership of "value"
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58 void SetValueInternal(uint16_t group,
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59 uint16_t element,
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60 DicomValue* value);
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62 // used for unit tests only
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63 static void ResetDefaultMainDicomTags();
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65 public:
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66 ~DicomMap();
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68 size_t GetSize() const;
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70 DicomMap* Clone() const;
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71
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72 void Assign(const DicomMap& other);
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74 void Clear();
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76 void SetNullValue(uint16_t group,
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77 uint16_t element);
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78
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79 void SetNullValue(const DicomTag& tag);
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81 void SetValue(uint16_t group,
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82 uint16_t element,
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83 const DicomValue& value);
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85 void SetValue(const DicomTag& tag,
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86 const DicomValue& value);
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88 void SetValue(const DicomTag& tag,
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89 const std::string& str,
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90 bool isBinary);
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92 void SetValue(uint16_t group,
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93 uint16_t element,
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94 const std::string& str,
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95 bool isBinary);
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96
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97 void SetValue(const DicomTag& tag,
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98 const Json::Value& value);
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99
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100 bool HasTag(uint16_t group, uint16_t element) const;
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101
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102 bool HasTag(const DicomTag& tag) const;
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103
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104 const DicomValue& GetValue(uint16_t group, uint16_t element) const;
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105
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106 const DicomValue& GetValue(const DicomTag& tag) const;
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107
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108 // DO NOT delete the returned value!
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109 const DicomValue* TestAndGetValue(uint16_t group, uint16_t element) const;
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111 // DO NOT delete the returned value!
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112 const DicomValue* TestAndGetValue(const DicomTag& tag) const;
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113
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114 void Remove(const DicomTag& tag);
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115
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116 void RemoveTags(const std::set<DicomTag>& tags);
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117
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118 void ExtractPatientInformation(DicomMap& result) const;
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119
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120 void ExtractStudyInformation(DicomMap& result) const;
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121
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122 void ExtractSeriesInformation(DicomMap& result) const;
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124 void ExtractInstanceInformation(DicomMap& result) const;
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125
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126 void ExtractResourceInformation(DicomMap& result, ResourceType level) const;
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128 void ExtractTags(DicomMap& result, const std::set<DicomTag>& tags) const;
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130 void ExtractSequences(DicomMap& result) const;
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131
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132 static void SetupFindPatientTemplate(DicomMap& result);
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133
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134 static void SetupFindStudyTemplate(DicomMap& result);
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135
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136 static void SetupFindSeriesTemplate(DicomMap& result);
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137
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138 static void SetupFindInstanceTemplate(DicomMap& result);
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139
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140 void CopyTagIfExists(const DicomMap& source,
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141 const DicomTag& tag);
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142
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143 static bool IsMainDicomTag(const DicomTag& tag, ResourceType level);
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144
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145 static bool IsMainDicomTag(const DicomTag& tag);
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146
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147 static bool IsComputedTag(const DicomTag& tag, ResourceType level);
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148
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149 static bool IsComputedTag(const DicomTag& tag);
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151 static bool HasOnlyComputedTags(const std::set<DicomTag>& tags);
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152
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153 static bool HasComputedTags(const std::set<DicomTag>& tags, ResourceType level);
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154
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155 static bool HasComputedTags(const std::set<DicomTag>& tags);
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156
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157 static const std::set<DicomTag>& GetMainDicomTags(ResourceType level);
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158
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159 // returns a string uniquely identifying the list of main dicom tags for a level
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160 static const std::string& GetMainDicomTagsSignature(ResourceType level);
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161
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162 static const std::string& GetDefaultMainDicomTagsSignature(ResourceType level);
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163
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164 static const std::set<DicomTag>& GetAllMainDicomTags();
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165
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166 // adds a main dicom tag to the definition of main dicom tags for each level.
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167 // this should be done once at startup before you use MainDicomTags methods
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168 static void AddMainDicomTag(const DicomTag& tag, ResourceType level);
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169
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170 void GetTags(std::set<DicomTag>& tags) const;
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171
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172 static bool IsDicomFile(const void* dicom,
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173 size_t size);
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174
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175 static bool ParseDicomMetaInformation(DicomMap& result,
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176 const void* dicom,
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177 size_t size);
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178
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179 void LogMissingTagsForStore() const;
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180
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181 static void LogMissingTagsForStore(const std::string& patientId,
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182 const std::string& studyInstanceUid,
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183 const std::string& seriesInstanceUid,
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184 const std::string& sopInstanceUid);
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185
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186 bool LookupStringValue(std::string& result,
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187 const DicomTag& tag,
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188 bool allowBinary) const;
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189
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190 bool ParseInteger32(int32_t& result,
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191 const DicomTag& tag) const;
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192
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193 bool ParseInteger64(int64_t& result,
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194 const DicomTag& tag) const;
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195
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196 bool ParseUnsignedInteger32(uint32_t& result,
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197 const DicomTag& tag) const;
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198
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199 bool ParseUnsignedInteger64(uint64_t& result,
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200 const DicomTag& tag) const;
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201
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202 bool ParseFloat(float& result,
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203 const DicomTag& tag) const;
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204
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205 bool ParseFirstFloat(float& result,
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206 const DicomTag& tag) const;
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207
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208 bool ParseDouble(double& result,
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209 const DicomTag& tag) const;
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210
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211 void FromDicomAsJson(const Json::Value& dicomAsJson,
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212 bool append = false,
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213 bool parseSequences = false);
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214
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215 void Merge(const DicomMap& other);
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216
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217 void MergeMainDicomTags(const DicomMap& other,
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218 ResourceType level);
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219
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220 void ExtractMainDicomTags(const DicomMap& other);
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221
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222 bool HasOnlyMainDicomTags() const;
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223
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224 void Serialize(Json::Value& target) const;
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225
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226 void Unserialize(const Json::Value& source);
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227
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228 void FromDicomWeb(const Json::Value& source);
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229
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230 std::string GetStringValue(const DicomTag& tag,
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231 const std::string& defaultValue,
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232 bool allowBinary) const;
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233
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234 void RemoveBinaryTags();
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235
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236 void RemoveSequences();
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237
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238 void DumpMainDicomTags(Json::Value& target,
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239 ResourceType level) const;
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240
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241 void Print(FILE* fp) const; // For debugging only
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242 };
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243 }