Mercurial > hg > orthanc
annotate OrthancServer/DatabaseWrapper.cpp @ 1669:a412ad57f0f9 db-changes
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 01 Oct 2015 11:55:25 +0200 |
| parents | de1413733c97 |
| children | 16955f8fec4d |
| rev | line source |
|---|---|
| 183 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
| 183 | 5 * |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 10 * | |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 22 * | |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
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33 #include "PrecompiledHeadersServer.h" |
| 183 | 34 #include "DatabaseWrapper.h" |
| 35 | |
| 36 #include "../Core/DicomFormat/DicomArray.h" | |
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37 #include "../Core/Logging.h" |
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38 #include "../Core/Uuid.h" |
| 183 | 39 #include "EmbeddedResources.h" |
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40 #include "ServerToolbox.h" |
| 183 | 41 |
| 42 #include <stdio.h> | |
| 1247 | 43 #include <boost/lexical_cast.hpp> |
| 183 | 44 |
| 45 namespace Orthanc | |
| 46 { | |
| 47 | |
| 48 namespace Internals | |
| 49 { | |
| 50 class SignalFileDeleted : public SQLite::IScalarFunction | |
| 51 { | |
| 52 private: | |
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53 IDatabaseListener& listener_; |
| 183 | 54 |
| 55 public: | |
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56 SignalFileDeleted(IDatabaseListener& listener) : |
| 183 | 57 listener_(listener) |
| 58 { | |
| 59 } | |
| 60 | |
| 61 virtual const char* GetName() const | |
| 62 { | |
| 63 return "SignalFileDeleted"; | |
| 64 } | |
| 65 | |
| 66 virtual unsigned int GetCardinality() const | |
| 67 { | |
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68 return 7; |
| 183 | 69 } |
| 70 | |
| 71 virtual void Compute(SQLite::FunctionContext& context) | |
| 72 { | |
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73 std::string uncompressedMD5, compressedMD5; |
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74 |
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75 if (!context.IsNullValue(5)) |
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76 { |
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77 uncompressedMD5 = context.GetStringValue(5); |
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78 } |
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79 |
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80 if (!context.IsNullValue(6)) |
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81 { |
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82 compressedMD5 = context.GetStringValue(6); |
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83 } |
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84 |
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85 FileInfo info(context.GetStringValue(0), |
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86 static_cast<FileContentType>(context.GetIntValue(1)), |
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87 static_cast<uint64_t>(context.GetInt64Value(2)), |
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88 uncompressedMD5, |
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89 static_cast<CompressionType>(context.GetIntValue(3)), |
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90 static_cast<uint64_t>(context.GetInt64Value(4)), |
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91 compressedMD5); |
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92 |
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93 listener_.SignalFileDeleted(info); |
| 183 | 94 } |
| 95 }; | |
| 96 | |
| 1158 | 97 class SignalResourceDeleted : public SQLite::IScalarFunction |
| 98 { | |
| 99 private: | |
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100 IDatabaseListener& listener_; |
| 1158 | 101 |
| 102 public: | |
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103 SignalResourceDeleted(IDatabaseListener& listener) : |
| 1158 | 104 listener_(listener) |
| 105 { | |
| 106 } | |
| 107 | |
| 108 virtual const char* GetName() const | |
| 109 { | |
| 110 return "SignalResourceDeleted"; | |
| 111 } | |
| 112 | |
| 113 virtual unsigned int GetCardinality() const | |
| 114 { | |
| 115 return 2; | |
| 116 } | |
| 117 | |
| 118 virtual void Compute(SQLite::FunctionContext& context) | |
| 119 { | |
| 120 ResourceType type = static_cast<ResourceType>(context.GetIntValue(1)); | |
| 1198 | 121 ServerIndexChange change(ChangeType_Deleted, type, context.GetStringValue(0)); |
| 122 listener_.SignalChange(change); | |
| 1158 | 123 } |
| 124 }; | |
| 125 | |
| 183 | 126 class SignalRemainingAncestor : public SQLite::IScalarFunction |
| 127 { | |
| 128 private: | |
| 129 bool hasRemainingAncestor_; | |
| 130 std::string remainingPublicId_; | |
| 131 ResourceType remainingType_; | |
| 132 | |
| 133 public: | |
| 660 | 134 SignalRemainingAncestor() : |
| 135 hasRemainingAncestor_(false) | |
| 136 { | |
| 137 } | |
| 138 | |
| 183 | 139 void Reset() |
| 140 { | |
| 141 hasRemainingAncestor_ = false; | |
| 142 } | |
| 143 | |
| 144 virtual const char* GetName() const | |
| 145 { | |
| 146 return "SignalRemainingAncestor"; | |
| 147 } | |
| 148 | |
| 149 virtual unsigned int GetCardinality() const | |
| 150 { | |
| 151 return 2; | |
| 152 } | |
| 153 | |
| 154 virtual void Compute(SQLite::FunctionContext& context) | |
| 155 { | |
| 156 VLOG(1) << "There exists a remaining ancestor with public ID \"" | |
| 157 << context.GetStringValue(0) | |
| 158 << "\" of type " | |
| 159 << context.GetIntValue(1); | |
| 160 | |
| 161 if (!hasRemainingAncestor_ || | |
| 162 remainingType_ >= context.GetIntValue(1)) | |
| 163 { | |
| 164 hasRemainingAncestor_ = true; | |
| 165 remainingPublicId_ = context.GetStringValue(0); | |
| 166 remainingType_ = static_cast<ResourceType>(context.GetIntValue(1)); | |
| 167 } | |
| 168 } | |
| 169 | |
| 170 bool HasRemainingAncestor() const | |
| 171 { | |
| 172 return hasRemainingAncestor_; | |
| 173 } | |
| 174 | |
| 175 const std::string& GetRemainingAncestorId() const | |
| 176 { | |
| 177 assert(hasRemainingAncestor_); | |
| 178 return remainingPublicId_; | |
| 179 } | |
| 180 | |
| 181 ResourceType GetRemainingAncestorType() const | |
| 182 { | |
| 183 assert(hasRemainingAncestor_); | |
| 184 return remainingType_; | |
| 185 } | |
| 186 }; | |
| 187 } | |
| 188 | |
| 189 | |
| 190 | |
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191 void DatabaseWrapper::SetGlobalProperty(GlobalProperty property, |
| 183 | 192 const std::string& value) |
| 193 { | |
| 194 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO GlobalProperties VALUES(?, ?)"); | |
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195 s.BindInt(0, property); |
| 183 | 196 s.BindString(1, value); |
| 197 s.Run(); | |
| 198 } | |
| 199 | |
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200 bool DatabaseWrapper::LookupGlobalProperty(std::string& target, |
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201 GlobalProperty property) |
| 183 | 202 { |
| 203 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
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204 "SELECT value FROM GlobalProperties WHERE property=?"); |
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205 s.BindInt(0, property); |
| 183 | 206 |
| 207 if (!s.Step()) | |
| 208 { | |
| 209 return false; | |
| 210 } | |
| 211 else | |
| 212 { | |
| 213 target = s.ColumnString(0); | |
| 214 return true; | |
| 215 } | |
| 216 } | |
| 217 | |
| 218 int64_t DatabaseWrapper::CreateResource(const std::string& publicId, | |
| 219 ResourceType type) | |
| 220 { | |
| 221 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources VALUES(NULL, ?, ?, NULL)"); | |
| 222 s.BindInt(0, type); | |
| 223 s.BindString(1, publicId); | |
| 224 s.Run(); | |
| 1299 | 225 return db_.GetLastInsertRowId(); |
| 183 | 226 } |
| 227 | |
| 1294 | 228 bool DatabaseWrapper::LookupResource(int64_t& id, |
| 229 ResourceType& type, | |
| 230 const std::string& publicId) | |
| 183 | 231 { |
| 232 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 233 "SELECT internalId, resourceType FROM Resources WHERE publicId=?"); | |
| 234 s.BindString(0, publicId); | |
| 235 | |
| 236 if (!s.Step()) | |
| 237 { | |
| 238 return false; | |
| 239 } | |
| 240 else | |
| 241 { | |
| 242 id = s.ColumnInt(0); | |
| 243 type = static_cast<ResourceType>(s.ColumnInt(1)); | |
| 244 | |
| 245 // Check whether there is a single resource with this public id | |
| 246 assert(!s.Step()); | |
| 247 | |
| 248 return true; | |
| 249 } | |
| 250 } | |
| 251 | |
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252 bool DatabaseWrapper::LookupParent(int64_t& parentId, |
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253 int64_t resourceId) |
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254 { |
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255 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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256 "SELECT parentId FROM Resources WHERE internalId=?"); |
| 585 | 257 s.BindInt64(0, resourceId); |
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258 |
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259 if (!s.Step()) |
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260 { |
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261 throw OrthancException(ErrorCode_UnknownResource); |
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262 } |
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263 |
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264 if (s.ColumnIsNull(0)) |
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265 { |
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266 return false; |
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267 } |
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268 else |
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269 { |
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270 parentId = s.ColumnInt(0); |
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271 return true; |
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272 } |
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273 } |
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274 |
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275 std::string DatabaseWrapper::GetPublicId(int64_t resourceId) |
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276 { |
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277 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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278 "SELECT publicId FROM Resources WHERE internalId=?"); |
| 585 | 279 s.BindInt64(0, resourceId); |
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280 |
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281 if (!s.Step()) |
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282 { |
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283 throw OrthancException(ErrorCode_UnknownResource); |
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284 } |
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285 |
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286 return s.ColumnString(0); |
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287 } |
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288 |
| 304 | 289 |
| 290 ResourceType DatabaseWrapper::GetResourceType(int64_t resourceId) | |
| 291 { | |
| 292 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 293 "SELECT resourceType FROM Resources WHERE internalId=?"); | |
| 585 | 294 s.BindInt64(0, resourceId); |
| 304 | 295 |
| 296 if (!s.Step()) | |
| 297 { | |
| 298 throw OrthancException(ErrorCode_UnknownResource); | |
| 299 } | |
| 300 | |
| 301 return static_cast<ResourceType>(s.ColumnInt(0)); | |
| 302 } | |
| 303 | |
| 304 | |
| 183 | 305 void DatabaseWrapper::AttachChild(int64_t parent, |
| 306 int64_t child) | |
| 307 { | |
| 308 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); | |
| 585 | 309 s.BindInt64(0, parent); |
| 310 s.BindInt64(1, child); | |
| 183 | 311 s.Run(); |
| 312 } | |
| 313 | |
| 1241 | 314 |
| 315 void DatabaseWrapper::GetChildren(std::list<std::string>& childrenPublicIds, | |
|
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316 int64_t id) |
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317 { |
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318 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
| 585 | 319 s.BindInt64(0, id); |
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320 |
| 1241 | 321 childrenPublicIds.clear(); |
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322 while (s.Step()) |
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323 { |
| 1241 | 324 childrenPublicIds.push_back(s.ColumnString(0)); |
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325 } |
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326 } |
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327 |
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328 |
| 183 | 329 void DatabaseWrapper::DeleteResource(int64_t id) |
| 330 { | |
| 331 signalRemainingAncestor_->Reset(); | |
| 332 | |
| 333 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Resources WHERE internalId=?"); | |
| 585 | 334 s.BindInt64(0, id); |
| 183 | 335 s.Run(); |
| 336 | |
| 1247 | 337 if (signalRemainingAncestor_->HasRemainingAncestor() && |
| 338 listener_ != NULL) | |
| 183 | 339 { |
| 1247 | 340 listener_->SignalRemainingAncestor(signalRemainingAncestor_->GetRemainingAncestorType(), |
| 341 signalRemainingAncestor_->GetRemainingAncestorId()); | |
| 183 | 342 } |
| 343 } | |
| 344 | |
| 345 void DatabaseWrapper::SetMetadata(int64_t id, | |
| 346 MetadataType type, | |
| 347 const std::string& value) | |
| 348 { | |
| 349 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO Metadata VALUES(?, ?, ?)"); | |
| 585 | 350 s.BindInt64(0, id); |
| 183 | 351 s.BindInt(1, type); |
| 352 s.BindString(2, value); | |
| 353 s.Run(); | |
| 354 } | |
| 355 | |
| 438 | 356 void DatabaseWrapper::DeleteMetadata(int64_t id, |
| 357 MetadataType type) | |
| 358 { | |
| 359 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Metadata WHERE id=? and type=?"); | |
| 585 | 360 s.BindInt64(0, id); |
| 438 | 361 s.BindInt(1, type); |
| 362 s.Run(); | |
| 363 } | |
| 364 | |
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365 bool DatabaseWrapper::LookupMetadata(std::string& target, |
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366 int64_t id, |
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367 MetadataType type) |
| 183 | 368 { |
| 369 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 370 "SELECT value FROM Metadata WHERE id=? AND type=?"); | |
| 585 | 371 s.BindInt64(0, id); |
| 183 | 372 s.BindInt(1, type); |
| 373 | |
| 374 if (!s.Step()) | |
| 375 { | |
| 376 return false; | |
| 377 } | |
| 378 else | |
| 379 { | |
| 380 target = s.ColumnString(0); | |
| 381 return true; | |
| 382 } | |
| 383 } | |
| 384 | |
| 739 | 385 void DatabaseWrapper::ListAvailableMetadata(std::list<MetadataType>& target, |
|
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386 int64_t id) |
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387 { |
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388 target.clear(); |
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389 |
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390 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT type FROM Metadata WHERE id=?"); |
| 585 | 391 s.BindInt64(0, id); |
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392 |
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393 while (s.Step()) |
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394 { |
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395 target.push_back(static_cast<MetadataType>(s.ColumnInt(0))); |
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396 } |
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397 } |
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398 |
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399 |
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400 void DatabaseWrapper::AddAttachment(int64_t id, |
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401 const FileInfo& attachment) |
| 183 | 402 { |
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403 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO AttachedFiles VALUES(?, ?, ?, ?, ?, ?, ?, ?)"); |
| 585 | 404 s.BindInt64(0, id); |
| 233 | 405 s.BindInt(1, attachment.GetContentType()); |
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406 s.BindString(2, attachment.GetUuid()); |
| 585 | 407 s.BindInt64(3, attachment.GetCompressedSize()); |
| 408 s.BindInt64(4, attachment.GetUncompressedSize()); | |
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409 s.BindInt(5, attachment.GetCompressionType()); |
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410 s.BindString(6, attachment.GetUncompressedMD5()); |
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411 s.BindString(7, attachment.GetCompressedMD5()); |
| 183 | 412 s.Run(); |
| 413 } | |
| 414 | |
|
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415 |
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416 void DatabaseWrapper::DeleteAttachment(int64_t id, |
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417 FileContentType attachment) |
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418 { |
| 701 | 419 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM AttachedFiles WHERE id=? AND fileType=?"); |
|
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420 s.BindInt64(0, id); |
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421 s.BindInt(1, attachment); |
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422 s.Run(); |
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423 } |
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424 |
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425 |
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426 |
| 1301 | 427 void DatabaseWrapper::ListAvailableAttachments(std::list<FileContentType>& target, |
|
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428 int64_t id) |
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429 { |
| 1301 | 430 target.clear(); |
|
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431 |
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432 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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433 "SELECT fileType FROM AttachedFiles WHERE id=?"); |
| 585 | 434 s.BindInt64(0, id); |
|
440
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435 |
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436 while (s.Step()) |
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437 { |
| 1301 | 438 target.push_back(static_cast<FileContentType>(s.ColumnInt(0))); |
|
440
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439 } |
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440 } |
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441 |
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442 bool DatabaseWrapper::LookupAttachment(FileInfo& attachment, |
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443 int64_t id, |
| 233 | 444 FileContentType contentType) |
| 183 | 445 { |
| 446 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
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447 "SELECT uuid, uncompressedSize, compressionType, compressedSize, uncompressedMD5, compressedMD5 FROM AttachedFiles WHERE id=? AND fileType=?"); |
| 585 | 448 s.BindInt64(0, id); |
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449 s.BindInt(1, contentType); |
| 183 | 450 |
| 451 if (!s.Step()) | |
| 452 { | |
| 453 return false; | |
| 454 } | |
| 455 else | |
| 456 { | |
|
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457 attachment = FileInfo(s.ColumnString(0), |
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458 contentType, |
| 740 | 459 s.ColumnInt64(1), |
|
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460 s.ColumnString(4), |
|
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461 static_cast<CompressionType>(s.ColumnInt(2)), |
| 740 | 462 s.ColumnInt64(3), |
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463 s.ColumnString(5)); |
| 183 | 464 return true; |
| 465 } | |
| 466 } | |
| 467 | |
| 1162 | 468 |
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469 void DatabaseWrapper::ClearMainDicomTags(int64_t id) |
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470 { |
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471 { |
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472 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM DicomIdentifiers WHERE id=?"); |
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473 s.BindInt64(0, id); |
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474 s.Run(); |
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475 } |
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476 |
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477 { |
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478 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM MainDicomTags WHERE id=?"); |
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479 s.BindInt64(0, id); |
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480 s.Run(); |
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481 } |
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482 } |
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483 |
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484 |
| 1162 | 485 static void SetMainDicomTagsInternal(SQLite::Statement& s, |
| 486 int64_t id, | |
| 1286 | 487 const DicomTag& tag, |
| 488 const std::string& value) | |
| 1162 | 489 { |
| 490 s.BindInt64(0, id); | |
| 1286 | 491 s.BindInt(1, tag.GetGroup()); |
| 492 s.BindInt(2, tag.GetElement()); | |
| 493 s.BindString(3, value); | |
| 1162 | 494 s.Run(); |
| 495 } | |
| 496 | |
| 497 | |
| 1286 | 498 void DatabaseWrapper::SetMainDicomTag(int64_t id, |
| 499 const DicomTag& tag, | |
| 500 const std::string& value) | |
| 183 | 501 { |
| 1286 | 502 if (tag.IsIdentifier()) |
| 183 | 503 { |
| 1286 | 504 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO DicomIdentifiers VALUES(?, ?, ?, ?)"); |
| 505 SetMainDicomTagsInternal(s, id, tag, value); | |
| 506 } | |
| 507 else | |
| 508 { | |
| 509 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags VALUES(?, ?, ?, ?)"); | |
| 510 SetMainDicomTagsInternal(s, id, tag, value); | |
| 183 | 511 } |
| 512 } | |
| 513 | |
| 514 void DatabaseWrapper::GetMainDicomTags(DicomMap& map, | |
| 515 int64_t id) | |
| 516 { | |
| 517 map.Clear(); | |
| 518 | |
| 519 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM MainDicomTags WHERE id=?"); | |
| 585 | 520 s.BindInt64(0, id); |
| 183 | 521 while (s.Step()) |
| 522 { | |
| 523 map.SetValue(s.ColumnInt(1), | |
| 524 s.ColumnInt(2), | |
| 525 s.ColumnString(3)); | |
| 526 } | |
| 1162 | 527 |
| 528 SQLite::Statement s2(db_, SQLITE_FROM_HERE, "SELECT * FROM DicomIdentifiers WHERE id=?"); | |
| 529 s2.BindInt64(0, id); | |
| 530 while (s2.Step()) | |
| 531 { | |
| 532 map.SetValue(s2.ColumnInt(1), | |
| 533 s2.ColumnInt(2), | |
| 534 s2.ColumnString(3)); | |
| 535 } | |
| 183 | 536 } |
| 537 | |
| 538 | |
| 1301 | 539 bool DatabaseWrapper::GetParentPublicId(std::string& target, |
| 183 | 540 int64_t id) |
| 541 { | |
| 542 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " | |
| 543 "WHERE a.internalId = b.parentId AND b.internalId = ?"); | |
| 585 | 544 s.BindInt64(0, id); |
| 183 | 545 |
| 546 if (s.Step()) | |
| 547 { | |
| 1301 | 548 target = s.ColumnString(0); |
| 183 | 549 return true; |
| 550 } | |
| 551 else | |
| 552 { | |
| 553 return false; | |
| 554 } | |
| 555 } | |
| 556 | |
| 557 | |
| 1301 | 558 void DatabaseWrapper::GetChildrenPublicId(std::list<std::string>& target, |
| 183 | 559 int64_t id) |
| 560 { | |
| 561 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " | |
| 562 "WHERE a.parentId = b.internalId AND b.internalId = ?"); | |
| 585 | 563 s.BindInt64(0, id); |
| 183 | 564 |
| 1301 | 565 target.clear(); |
| 183 | 566 |
| 567 while (s.Step()) | |
| 568 { | |
| 1301 | 569 target.push_back(s.ColumnString(0)); |
| 183 | 570 } |
| 571 } | |
| 572 | |
| 573 | |
| 1301 | 574 void DatabaseWrapper::GetChildrenInternalId(std::list<int64_t>& target, |
| 199 | 575 int64_t id) |
| 576 { | |
| 577 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.internalId FROM Resources AS a, Resources AS b " | |
| 578 "WHERE a.parentId = b.internalId AND b.internalId = ?"); | |
| 585 | 579 s.BindInt64(0, id); |
| 199 | 580 |
| 1301 | 581 target.clear(); |
| 199 | 582 |
| 583 while (s.Step()) | |
| 584 { | |
| 1301 | 585 target.push_back(s.ColumnInt64(0)); |
| 199 | 586 } |
| 587 } | |
| 588 | |
| 589 | |
| 1198 | 590 void DatabaseWrapper::LogChange(int64_t internalId, |
| 591 const ServerIndexChange& change) | |
| 183 | 592 { |
|
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593 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Changes VALUES(NULL, ?, ?, ?, ?)"); |
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594 s.BindInt(0, change.GetChangeType()); |
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595 s.BindInt64(1, internalId); |
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596 s.BindInt(2, change.GetResourceType()); |
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597 s.BindString(3, change.GetDate()); |
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598 s.Run(); |
| 183 | 599 } |
| 600 | |
| 601 | |
| 1240 | 602 void DatabaseWrapper::GetChangesInternal(std::list<ServerIndexChange>& target, |
| 603 bool& done, | |
|
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604 SQLite::Statement& s, |
| 1302 | 605 uint32_t maxResults) |
| 204 | 606 { |
| 1244 | 607 target.clear(); |
| 608 | |
| 1240 | 609 while (target.size() < maxResults && s.Step()) |
| 204 | 610 { |
| 742 | 611 int64_t seq = s.ColumnInt64(0); |
| 204 | 612 ChangeType changeType = static_cast<ChangeType>(s.ColumnInt(1)); |
| 613 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(3)); | |
| 614 const std::string& date = s.ColumnString(4); | |
| 1240 | 615 |
| 616 int64_t internalId = s.ColumnInt64(2); | |
|
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617 std::string publicId = GetPublicId(internalId); |
| 204 | 618 |
| 1240 | 619 target.push_back(ServerIndexChange(seq, changeType, resourceType, publicId, date)); |
| 204 | 620 } |
| 621 | |
| 1240 | 622 done = !(target.size() == maxResults && s.Step()); |
|
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623 } |
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624 |
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625 |
| 1240 | 626 void DatabaseWrapper::GetChanges(std::list<ServerIndexChange>& target, |
| 627 bool& done, | |
|
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628 int64_t since, |
| 1302 | 629 uint32_t maxResults) |
|
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630 { |
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631 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes WHERE seq>? ORDER BY seq LIMIT ?"); |
| 585 | 632 s.BindInt64(0, since); |
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633 s.BindInt(1, maxResults + 1); |
| 1240 | 634 GetChangesInternal(target, done, s, maxResults); |
|
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635 } |
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636 |
| 1240 | 637 void DatabaseWrapper::GetLastChange(std::list<ServerIndexChange>& target) |
|
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638 { |
| 1240 | 639 bool done; // Ignored |
|
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640 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes ORDER BY seq DESC LIMIT 1"); |
| 1240 | 641 GetChangesInternal(target, done, s, 1); |
| 204 | 642 } |
| 643 | |
| 644 | |
| 1246 | 645 void DatabaseWrapper::LogExportedResource(const ExportedResource& resource) |
| 183 | 646 { |
| 231 | 647 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
| 648 "INSERT INTO ExportedResources VALUES(NULL, ?, ?, ?, ?, ?, ?, ?, ?)"); | |
| 649 | |
| 1246 | 650 s.BindInt(0, resource.GetResourceType()); |
| 651 s.BindString(1, resource.GetPublicId()); | |
| 652 s.BindString(2, resource.GetModality()); | |
| 653 s.BindString(3, resource.GetPatientId()); | |
| 654 s.BindString(4, resource.GetStudyInstanceUid()); | |
| 655 s.BindString(5, resource.GetSeriesInstanceUid()); | |
| 656 s.BindString(6, resource.GetSopInstanceUid()); | |
| 657 s.BindString(7, resource.GetDate()); | |
| 183 | 658 s.Run(); |
| 659 } | |
| 231 | 660 |
| 661 | |
| 1244 | 662 void DatabaseWrapper::GetExportedResourcesInternal(std::list<ExportedResource>& target, |
| 663 bool& done, | |
| 742 | 664 SQLite::Statement& s, |
| 1302 | 665 uint32_t maxResults) |
| 231 | 666 { |
| 1244 | 667 target.clear(); |
| 231 | 668 |
| 1244 | 669 while (target.size() < maxResults && s.Step()) |
| 231 | 670 { |
| 743 | 671 int64_t seq = s.ColumnInt64(0); |
| 231 | 672 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(1)); |
| 673 std::string publicId = s.ColumnString(2); | |
| 674 | |
| 1242 | 675 ExportedResource resource(seq, |
| 676 resourceType, | |
| 677 publicId, | |
| 678 s.ColumnString(3), // modality | |
| 679 s.ColumnString(8), // date | |
| 680 s.ColumnString(4), // patient ID | |
| 681 s.ColumnString(5), // study instance UID | |
| 682 s.ColumnString(6), // series instance UID | |
| 683 s.ColumnString(7)); // sop instance UID | |
| 684 | |
| 1244 | 685 target.push_back(resource); |
| 231 | 686 } |
| 687 | |
| 1244 | 688 done = !(target.size() == maxResults && s.Step()); |
|
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689 } |
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690 |
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691 |
| 1244 | 692 void DatabaseWrapper::GetExportedResources(std::list<ExportedResource>& target, |
| 693 bool& done, | |
|
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694 int64_t since, |
| 1302 | 695 uint32_t maxResults) |
|
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696 { |
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697 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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698 "SELECT * FROM ExportedResources WHERE seq>? ORDER BY seq LIMIT ?"); |
| 585 | 699 s.BindInt64(0, since); |
|
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700 s.BindInt(1, maxResults + 1); |
| 1244 | 701 GetExportedResourcesInternal(target, done, s, maxResults); |
|
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702 } |
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703 |
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704 |
| 1244 | 705 void DatabaseWrapper::GetLastExportedResource(std::list<ExportedResource>& target) |
|
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706 { |
| 1244 | 707 bool done; // Ignored |
|
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708 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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709 "SELECT * FROM ExportedResources ORDER BY seq DESC LIMIT 1"); |
| 1244 | 710 GetExportedResourcesInternal(target, done, s, 1); |
| 231 | 711 } |
| 712 | |
| 713 | |
| 183 | 714 |
| 715 | |
| 716 int64_t DatabaseWrapper::GetTableRecordCount(const std::string& table) | |
| 717 { | |
| 718 char buf[128]; | |
| 719 sprintf(buf, "SELECT COUNT(*) FROM %s", table.c_str()); | |
| 720 SQLite::Statement s(db_, buf); | |
| 721 | |
| 218 | 722 if (!s.Step()) |
| 723 { | |
| 724 throw OrthancException(ErrorCode_InternalError); | |
| 725 } | |
| 726 | |
| 183 | 727 int64_t c = s.ColumnInt(0); |
| 728 assert(!s.Step()); | |
| 729 | |
| 730 return c; | |
| 731 } | |
| 732 | |
| 733 | |
| 734 uint64_t DatabaseWrapper::GetTotalCompressedSize() | |
| 735 { | |
| 736 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(compressedSize) FROM AttachedFiles"); | |
| 737 s.Run(); | |
| 738 return static_cast<uint64_t>(s.ColumnInt64(0)); | |
| 739 } | |
| 740 | |
| 741 | |
| 742 uint64_t DatabaseWrapper::GetTotalUncompressedSize() | |
| 743 { | |
| 744 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(uncompressedSize) FROM AttachedFiles"); | |
| 745 s.Run(); | |
| 746 return static_cast<uint64_t>(s.ColumnInt64(0)); | |
| 747 } | |
| 748 | |
| 1241 | 749 void DatabaseWrapper::GetAllPublicIds(std::list<std::string>& target, |
| 190 | 750 ResourceType resourceType) |
| 751 { | |
| 752 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE resourceType=?"); | |
| 753 s.BindInt(0, resourceType); | |
| 754 | |
| 1241 | 755 target.clear(); |
| 190 | 756 while (s.Step()) |
| 757 { | |
| 1241 | 758 target.push_back(s.ColumnString(0)); |
| 190 | 759 } |
| 760 } | |
| 761 | |
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762 void DatabaseWrapper::GetAllPublicIds(std::list<std::string>& target, |
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763 ResourceType resourceType, |
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764 size_t since, |
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765 size_t limit) |
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766 { |
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767 if (limit == 0) |
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768 { |
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769 target.clear(); |
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770 return; |
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771 } |
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772 |
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773 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE resourceType=? LIMIT ? OFFSET ?"); |
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774 s.BindInt(0, resourceType); |
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775 s.BindInt64(1, limit); |
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776 s.BindInt64(2, since); |
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777 |
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778 target.clear(); |
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779 while (s.Step()) |
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780 { |
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781 target.push_back(s.ColumnString(0)); |
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782 } |
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783 } |
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784 |
| 183 | 785 |
| 1247 | 786 DatabaseWrapper::DatabaseWrapper(const std::string& path) : listener_(NULL) |
| 183 | 787 { |
| 788 db_.Open(path); | |
| 789 Open(); | |
| 790 } | |
| 791 | |
| 1247 | 792 DatabaseWrapper::DatabaseWrapper() : listener_(NULL) |
| 183 | 793 { |
| 794 db_.OpenInMemory(); | |
| 795 Open(); | |
| 796 } | |
| 797 | |
| 798 void DatabaseWrapper::Open() | |
| 799 { | |
| 374 | 800 // Performance tuning of SQLite with PRAGMAs |
| 801 // http://www.sqlite.org/pragma.html | |
| 802 db_.Execute("PRAGMA SYNCHRONOUS=NORMAL;"); | |
| 803 db_.Execute("PRAGMA JOURNAL_MODE=WAL;"); | |
| 804 db_.Execute("PRAGMA LOCKING_MODE=EXCLUSIVE;"); | |
| 805 db_.Execute("PRAGMA WAL_AUTOCHECKPOINT=1000;"); | |
| 806 //db_.Execute("PRAGMA TEMP_STORE=memory"); | |
| 807 | |
| 183 | 808 if (!db_.DoesTableExist("GlobalProperties")) |
| 809 { | |
| 810 LOG(INFO) << "Creating the database"; | |
| 811 std::string query; | |
|
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812 EmbeddedResources::GetFileResource(query, EmbeddedResources::PREPARE_DATABASE); |
| 183 | 813 db_.Execute(query); |
| 814 } | |
| 815 | |
| 567 | 816 // Check the version of the database |
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817 std::string tmp; |
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818 if (!LookupGlobalProperty(tmp, GlobalProperty_DatabaseSchemaVersion)) |
| 1239 | 819 { |
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820 tmp = "Unknown"; |
| 1239 | 821 } |
| 822 | |
| 252 | 823 bool ok = false; |
| 824 try | |
| 825 { | |
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826 LOG(INFO) << "Version of the Orthanc database: " << tmp; |
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827 version_ = boost::lexical_cast<unsigned int>(tmp); |
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828 ok = true; |
| 252 | 829 } |
| 830 catch (boost::bad_lexical_cast&) | |
| 831 { | |
| 832 } | |
| 833 | |
| 834 if (!ok) | |
| 835 { | |
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836 LOG(ERROR) << "Incompatible version of the Orthanc database: " << tmp; |
| 252 | 837 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
| 838 } | |
| 839 | |
| 183 | 840 signalRemainingAncestor_ = new Internals::SignalRemainingAncestor; |
| 841 db_.Register(signalRemainingAncestor_); | |
| 1247 | 842 } |
| 843 | |
|
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844 |
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845 static void ExecuteUpgradeScript(SQLite::Connection& db, |
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846 EmbeddedResources::FileResourceId script) |
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847 { |
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848 std::string upgrade; |
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849 EmbeddedResources::GetFileResource(upgrade, script); |
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850 db.BeginTransaction(); |
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851 db.Execute(upgrade); |
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852 db.CommitTransaction(); |
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853 } |
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854 |
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855 |
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856 void DatabaseWrapper::Upgrade(unsigned int targetVersion, |
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857 IStorageArea& storageArea) |
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858 { |
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859 if (targetVersion != 6) |
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860 { |
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861 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
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862 } |
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863 |
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864 // This version of Orthanc is only compatible with versions 3, 4, |
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865 // 5 and 6 of the DB schema |
|
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866 if (version_ != 3 && |
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867 version_ != 4 && |
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868 version_ != 5 && |
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869 version_ != 6) |
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870 { |
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871 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
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872 } |
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873 |
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874 if (version_ == 3) |
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875 { |
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876 LOG(WARNING) << "Upgrading database version from 3 to 4"; |
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877 ExecuteUpgradeScript(db_, EmbeddedResources::UPGRADE_DATABASE_3_TO_4); |
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878 version_ = 4; |
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879 } |
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880 |
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881 if (version_ == 4) |
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882 { |
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883 LOG(WARNING) << "Upgrading database version from 4 to 5"; |
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884 ExecuteUpgradeScript(db_, EmbeddedResources::UPGRADE_DATABASE_4_TO_5); |
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885 version_ = 5; |
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886 } |
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887 |
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888 if (version_ == 5) |
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889 { |
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890 LOG(WARNING) << "Upgrading database version from 5 to 6"; |
|
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891 // No change in the DB schema, the step from version 5 to 6 only |
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892 // consists in reconstructing the main DICOM tags information. |
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893 db_.BeginTransaction(); |
|
1669
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894 Toolbox::ReconstructMainDicomTags(*this, storageArea, ResourceType_Study); |
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|
895 Toolbox::ReconstructMainDicomTags(*this, storageArea, ResourceType_Series); |
|
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896 db_.CommitTransaction(); |
|
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897 version_ = 6; |
|
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898 } |
|
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899 } |
|
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900 |
|
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changeset
|
901 |
|
1432
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rename IServerIndexListener as IDatabaseListener
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1407
diff
changeset
|
902 void DatabaseWrapper::SetListener(IDatabaseListener& listener) |
| 1247 | 903 { |
| 904 listener_ = &listener; | |
| 905 db_.Register(new Internals::SignalFileDeleted(listener)); | |
| 906 db_.Register(new Internals::SignalResourceDeleted(listener)); | |
| 183 | 907 } |
| 238 | 908 |
| 909 uint64_t DatabaseWrapper::GetResourceCount(ResourceType resourceType) | |
| 910 { | |
| 911 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 912 "SELECT COUNT(*) FROM Resources WHERE resourceType=?"); | |
| 913 s.BindInt(0, resourceType); | |
| 914 | |
| 915 if (!s.Step()) | |
| 916 { | |
| 917 throw OrthancException(ErrorCode_InternalError); | |
| 918 } | |
| 919 | |
| 920 int64_t c = s.ColumnInt(0); | |
| 921 assert(!s.Step()); | |
| 922 | |
| 923 return c; | |
| 924 } | |
|
262
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925 |
|
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926 bool DatabaseWrapper::SelectPatientToRecycle(int64_t& internalId) |
|
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927 { |
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928 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
|
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|
929 "SELECT patientId FROM PatientRecyclingOrder ORDER BY seq ASC LIMIT 1"); |
|
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|
930 |
|
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|
931 if (!s.Step()) |
|
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932 { |
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933 // No patient remaining or all the patients are protected |
|
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934 return false; |
|
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|
935 } |
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|
936 else |
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|
937 { |
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938 internalId = s.ColumnInt(0); |
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939 return true; |
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|
940 } |
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941 } |
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942 |
|
268
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943 bool DatabaseWrapper::SelectPatientToRecycle(int64_t& internalId, |
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944 int64_t patientIdToAvoid) |
|
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945 { |
|
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|
946 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
|
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|
947 "SELECT patientId FROM PatientRecyclingOrder " |
|
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changeset
|
948 "WHERE patientId != ? ORDER BY seq ASC LIMIT 1"); |
| 585 | 949 s.BindInt64(0, patientIdToAvoid); |
|
268
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|
950 |
|
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|
951 if (!s.Step()) |
|
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|
952 { |
|
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|
953 // No patient remaining or all the patients are protected |
|
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|
954 return false; |
|
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|
955 } |
|
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|
956 else |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
957 { |
|
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|
958 internalId = s.ColumnInt(0); |
|
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diff
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|
959 return true; |
|
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diff
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|
960 } |
|
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|
961 } |
|
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|
962 |
|
262
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|
963 bool DatabaseWrapper::IsProtectedPatient(int64_t internalId) |
|
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964 { |
|
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|
965 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
|
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|
966 "SELECT * FROM PatientRecyclingOrder WHERE patientId = ?"); |
| 585 | 967 s.BindInt64(0, internalId); |
|
262
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|
968 return !s.Step(); |
|
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|
969 } |
|
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diff
changeset
|
970 |
|
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changeset
|
971 void DatabaseWrapper::SetProtectedPatient(int64_t internalId, |
|
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972 bool isProtected) |
|
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973 { |
|
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974 if (isProtected) |
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975 { |
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976 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
| 585 | 977 s.BindInt64(0, internalId); |
|
262
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978 s.Run(); |
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979 } |
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980 else if (IsProtectedPatient(internalId)) |
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981 { |
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982 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO PatientRecyclingOrder VALUES(NULL, ?)"); |
| 585 | 983 s.BindInt64(0, internalId); |
|
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984 s.Run(); |
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985 } |
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986 else |
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987 { |
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988 // Nothing to do: The patient is already unprotected |
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989 } |
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990 } |
| 310 | 991 |
| 992 | |
|
413
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993 |
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994 void DatabaseWrapper::ClearTable(const std::string& tableName) |
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995 { |
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996 db_.Execute("DELETE FROM " + tableName); |
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997 } |
| 513 | 998 |
| 999 | |
| 1000 bool DatabaseWrapper::IsExistingResource(int64_t internalId) | |
| 1001 { | |
| 1002 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 1003 "SELECT * FROM Resources WHERE internalId=?"); | |
| 585 | 1004 s.BindInt64(0, internalId); |
| 513 | 1005 return s.Step(); |
| 1006 } | |
| 521 | 1007 |
| 1008 | |
| 1301 | 1009 void DatabaseWrapper::LookupIdentifier(std::list<int64_t>& target, |
| 1162 | 1010 const DicomTag& tag, |
| 1011 const std::string& value) | |
| 521 | 1012 { |
| 1162 | 1013 if (!tag.IsIdentifier()) |
| 1014 { | |
| 1015 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 1016 } | |
| 1017 | |
| 521 | 1018 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
| 1162 | 1019 "SELECT id FROM DicomIdentifiers WHERE tagGroup=? AND tagElement=? and value=?"); |
| 521 | 1020 |
| 1021 s.BindInt(0, tag.GetGroup()); | |
| 1022 s.BindInt(1, tag.GetElement()); | |
| 1023 s.BindString(2, value); | |
| 1024 | |
| 1301 | 1025 target.clear(); |
| 521 | 1026 |
| 1027 while (s.Step()) | |
| 1028 { | |
| 1301 | 1029 target.push_back(s.ColumnInt64(0)); |
| 521 | 1030 } |
| 1031 } | |
| 1032 | |
| 1033 | |
| 1301 | 1034 void DatabaseWrapper::LookupIdentifier(std::list<int64_t>& target, |
| 1162 | 1035 const std::string& value) |
| 521 | 1036 { |
| 1037 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 1162 | 1038 "SELECT id FROM DicomIdentifiers WHERE value=?"); |
| 521 | 1039 |
| 1040 s.BindString(0, value); | |
| 1041 | |
| 1301 | 1042 target.clear(); |
| 521 | 1043 |
| 1044 while (s.Step()) | |
| 1045 { | |
| 1301 | 1046 target.push_back(s.ColumnInt64(0)); |
| 521 | 1047 } |
| 1048 } | |
|
1006
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1049 |
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1050 |
| 1301 | 1051 void DatabaseWrapper::GetAllMetadata(std::map<MetadataType, std::string>& target, |
|
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1052 int64_t id) |
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1053 { |
| 1301 | 1054 target.clear(); |
|
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1055 |
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1056 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT type, value FROM Metadata WHERE id=?"); |
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1057 s.BindInt64(0, id); |
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1058 |
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1059 while (s.Step()) |
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1060 { |
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1061 MetadataType key = static_cast<MetadataType>(s.ColumnInt(0)); |
| 1301 | 1062 target[key] = s.ColumnString(1); |
|
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1063 } |
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1064 } |
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1065 |
| 183 | 1066 } |