Mercurial > hg > orthanc
annotate OrthancServer/DatabaseWrapper.cpp @ 694:72dc919a028c
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| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 05 Feb 2014 13:26:19 +0100 |
| parents | 01d8611c4a60 |
| children | 2929e17f8447 |
| rev | line source |
|---|---|
| 183 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 689 | 3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege, |
| 183 | 4 * Belgium |
| 5 * | |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 10 * | |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 22 * | |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
| 33 #include "DatabaseWrapper.h" | |
| 34 | |
| 35 #include "../Core/DicomFormat/DicomArray.h" | |
|
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36 #include "../Core/Uuid.h" |
| 183 | 37 #include "EmbeddedResources.h" |
| 38 | |
| 39 #include <glog/logging.h> | |
| 40 #include <stdio.h> | |
| 41 | |
| 42 namespace Orthanc | |
| 43 { | |
| 44 | |
| 45 namespace Internals | |
| 46 { | |
| 47 class SignalFileDeleted : public SQLite::IScalarFunction | |
| 48 { | |
| 49 private: | |
| 50 IServerIndexListener& listener_; | |
| 51 | |
| 52 public: | |
| 53 SignalFileDeleted(IServerIndexListener& listener) : | |
| 54 listener_(listener) | |
| 55 { | |
| 56 } | |
| 57 | |
| 58 virtual const char* GetName() const | |
| 59 { | |
| 60 return "SignalFileDeleted"; | |
| 61 } | |
| 62 | |
| 63 virtual unsigned int GetCardinality() const | |
| 64 { | |
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65 return 7; |
| 183 | 66 } |
| 67 | |
| 68 virtual void Compute(SQLite::FunctionContext& context) | |
| 69 { | |
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70 std::string uncompressedMD5, compressedMD5; |
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71 |
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72 if (!context.IsNullValue(5)) |
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73 { |
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74 uncompressedMD5 = context.GetStringValue(5); |
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75 } |
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76 |
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77 if (!context.IsNullValue(6)) |
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78 { |
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79 compressedMD5 = context.GetStringValue(6); |
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80 } |
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81 |
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82 FileInfo info(context.GetStringValue(0), |
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83 static_cast<FileContentType>(context.GetIntValue(1)), |
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84 static_cast<uint64_t>(context.GetInt64Value(2)), |
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85 uncompressedMD5, |
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86 static_cast<CompressionType>(context.GetIntValue(3)), |
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87 static_cast<uint64_t>(context.GetInt64Value(4)), |
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88 compressedMD5); |
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89 |
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90 listener_.SignalFileDeleted(info); |
| 183 | 91 } |
| 92 }; | |
| 93 | |
| 94 class SignalRemainingAncestor : public SQLite::IScalarFunction | |
| 95 { | |
| 96 private: | |
| 97 bool hasRemainingAncestor_; | |
| 98 std::string remainingPublicId_; | |
| 99 ResourceType remainingType_; | |
| 100 | |
| 101 public: | |
| 660 | 102 SignalRemainingAncestor() : |
| 103 hasRemainingAncestor_(false) | |
| 104 { | |
| 105 } | |
| 106 | |
| 183 | 107 void Reset() |
| 108 { | |
| 109 hasRemainingAncestor_ = false; | |
| 110 } | |
| 111 | |
| 112 virtual const char* GetName() const | |
| 113 { | |
| 114 return "SignalRemainingAncestor"; | |
| 115 } | |
| 116 | |
| 117 virtual unsigned int GetCardinality() const | |
| 118 { | |
| 119 return 2; | |
| 120 } | |
| 121 | |
| 122 virtual void Compute(SQLite::FunctionContext& context) | |
| 123 { | |
| 124 VLOG(1) << "There exists a remaining ancestor with public ID \"" | |
| 125 << context.GetStringValue(0) | |
| 126 << "\" of type " | |
| 127 << context.GetIntValue(1); | |
| 128 | |
| 129 if (!hasRemainingAncestor_ || | |
| 130 remainingType_ >= context.GetIntValue(1)) | |
| 131 { | |
| 132 hasRemainingAncestor_ = true; | |
| 133 remainingPublicId_ = context.GetStringValue(0); | |
| 134 remainingType_ = static_cast<ResourceType>(context.GetIntValue(1)); | |
| 135 } | |
| 136 } | |
| 137 | |
| 138 bool HasRemainingAncestor() const | |
| 139 { | |
| 140 return hasRemainingAncestor_; | |
| 141 } | |
| 142 | |
| 143 const std::string& GetRemainingAncestorId() const | |
| 144 { | |
| 145 assert(hasRemainingAncestor_); | |
| 146 return remainingPublicId_; | |
| 147 } | |
| 148 | |
| 149 ResourceType GetRemainingAncestorType() const | |
| 150 { | |
| 151 assert(hasRemainingAncestor_); | |
| 152 return remainingType_; | |
| 153 } | |
| 154 }; | |
| 155 } | |
| 156 | |
| 157 | |
| 158 | |
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159 void DatabaseWrapper::SetGlobalProperty(GlobalProperty property, |
| 183 | 160 const std::string& value) |
| 161 { | |
| 162 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO GlobalProperties VALUES(?, ?)"); | |
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163 s.BindInt(0, property); |
| 183 | 164 s.BindString(1, value); |
| 165 s.Run(); | |
| 166 } | |
| 167 | |
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168 bool DatabaseWrapper::LookupGlobalProperty(std::string& target, |
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169 GlobalProperty property) |
| 183 | 170 { |
| 171 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
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172 "SELECT value FROM GlobalProperties WHERE property=?"); |
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173 s.BindInt(0, property); |
| 183 | 174 |
| 175 if (!s.Step()) | |
| 176 { | |
| 177 return false; | |
| 178 } | |
| 179 else | |
| 180 { | |
| 181 target = s.ColumnString(0); | |
| 182 return true; | |
| 183 } | |
| 184 } | |
| 185 | |
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186 std::string DatabaseWrapper::GetGlobalProperty(GlobalProperty property, |
| 183 | 187 const std::string& defaultValue) |
| 188 { | |
| 189 std::string s; | |
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190 if (LookupGlobalProperty(s, property)) |
| 183 | 191 { |
| 192 return s; | |
| 193 } | |
| 194 else | |
| 195 { | |
| 196 return defaultValue; | |
| 197 } | |
| 198 } | |
| 199 | |
| 200 int64_t DatabaseWrapper::CreateResource(const std::string& publicId, | |
| 201 ResourceType type) | |
| 202 { | |
| 203 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources VALUES(NULL, ?, ?, NULL)"); | |
| 204 s.BindInt(0, type); | |
| 205 s.BindString(1, publicId); | |
| 206 s.Run(); | |
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207 int64_t id = db_.GetLastInsertRowId(); |
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208 |
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209 ChangeType changeType; |
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210 switch (type) |
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211 { |
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212 case ResourceType_Patient: |
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213 changeType = ChangeType_NewPatient; |
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214 break; |
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215 |
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216 case ResourceType_Study: |
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217 changeType = ChangeType_NewStudy; |
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218 break; |
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219 |
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220 case ResourceType_Series: |
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221 changeType = ChangeType_NewSeries; |
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222 break; |
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223 |
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224 case ResourceType_Instance: |
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225 changeType = ChangeType_NewInstance; |
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226 break; |
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227 |
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228 default: |
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229 throw OrthancException(ErrorCode_InternalError); |
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230 } |
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231 |
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232 LogChange(changeType, id, type); |
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233 return id; |
| 183 | 234 } |
| 235 | |
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236 bool DatabaseWrapper::LookupResource(const std::string& publicId, |
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237 int64_t& id, |
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238 ResourceType& type) |
| 183 | 239 { |
| 240 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 241 "SELECT internalId, resourceType FROM Resources WHERE publicId=?"); | |
| 242 s.BindString(0, publicId); | |
| 243 | |
| 244 if (!s.Step()) | |
| 245 { | |
| 246 return false; | |
| 247 } | |
| 248 else | |
| 249 { | |
| 250 id = s.ColumnInt(0); | |
| 251 type = static_cast<ResourceType>(s.ColumnInt(1)); | |
| 252 | |
| 253 // Check whether there is a single resource with this public id | |
| 254 assert(!s.Step()); | |
| 255 | |
| 256 return true; | |
| 257 } | |
| 258 } | |
| 259 | |
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260 bool DatabaseWrapper::LookupParent(int64_t& parentId, |
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261 int64_t resourceId) |
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262 { |
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263 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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264 "SELECT parentId FROM Resources WHERE internalId=?"); |
| 585 | 265 s.BindInt64(0, resourceId); |
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266 |
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267 if (!s.Step()) |
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268 { |
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269 throw OrthancException(ErrorCode_UnknownResource); |
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270 } |
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271 |
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272 if (s.ColumnIsNull(0)) |
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273 { |
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274 return false; |
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275 } |
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276 else |
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277 { |
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278 parentId = s.ColumnInt(0); |
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279 return true; |
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280 } |
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281 } |
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282 |
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283 std::string DatabaseWrapper::GetPublicId(int64_t resourceId) |
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284 { |
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285 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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286 "SELECT publicId FROM Resources WHERE internalId=?"); |
| 585 | 287 s.BindInt64(0, resourceId); |
|
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288 |
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289 if (!s.Step()) |
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290 { |
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291 throw OrthancException(ErrorCode_UnknownResource); |
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292 } |
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293 |
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294 return s.ColumnString(0); |
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295 } |
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296 |
| 304 | 297 |
| 298 ResourceType DatabaseWrapper::GetResourceType(int64_t resourceId) | |
| 299 { | |
| 300 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 301 "SELECT resourceType FROM Resources WHERE internalId=?"); | |
| 585 | 302 s.BindInt64(0, resourceId); |
| 304 | 303 |
| 304 if (!s.Step()) | |
| 305 { | |
| 306 throw OrthancException(ErrorCode_UnknownResource); | |
| 307 } | |
| 308 | |
| 309 return static_cast<ResourceType>(s.ColumnInt(0)); | |
| 310 } | |
| 311 | |
| 312 | |
| 183 | 313 void DatabaseWrapper::AttachChild(int64_t parent, |
| 314 int64_t child) | |
| 315 { | |
| 316 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); | |
| 585 | 317 s.BindInt64(0, parent); |
| 318 s.BindInt64(1, child); | |
| 183 | 319 s.Run(); |
| 320 } | |
| 321 | |
|
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322 void DatabaseWrapper::GetChildren(Json::Value& childrenPublicIds, |
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323 int64_t id) |
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324 { |
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325 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
| 585 | 326 s.BindInt64(0, id); |
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327 |
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328 childrenPublicIds = Json::arrayValue; |
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329 while (s.Step()) |
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330 { |
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331 childrenPublicIds.append(s.ColumnString(0)); |
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332 } |
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333 } |
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334 |
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335 |
| 183 | 336 void DatabaseWrapper::DeleteResource(int64_t id) |
| 337 { | |
| 338 signalRemainingAncestor_->Reset(); | |
| 339 | |
| 340 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Resources WHERE internalId=?"); | |
| 585 | 341 s.BindInt64(0, id); |
| 183 | 342 s.Run(); |
| 343 | |
| 344 if (signalRemainingAncestor_->HasRemainingAncestor()) | |
| 345 { | |
| 346 listener_.SignalRemainingAncestor(signalRemainingAncestor_->GetRemainingAncestorType(), | |
| 347 signalRemainingAncestor_->GetRemainingAncestorId()); | |
| 348 } | |
| 349 } | |
| 350 | |
| 351 void DatabaseWrapper::SetMetadata(int64_t id, | |
| 352 MetadataType type, | |
| 353 const std::string& value) | |
| 354 { | |
| 355 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO Metadata VALUES(?, ?, ?)"); | |
| 585 | 356 s.BindInt64(0, id); |
| 183 | 357 s.BindInt(1, type); |
| 358 s.BindString(2, value); | |
| 359 s.Run(); | |
| 360 } | |
| 361 | |
| 438 | 362 void DatabaseWrapper::DeleteMetadata(int64_t id, |
| 363 MetadataType type) | |
| 364 { | |
| 365 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Metadata WHERE id=? and type=?"); | |
| 585 | 366 s.BindInt64(0, id); |
| 438 | 367 s.BindInt(1, type); |
| 368 s.Run(); | |
| 369 } | |
| 370 | |
|
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371 bool DatabaseWrapper::LookupMetadata(std::string& target, |
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372 int64_t id, |
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373 MetadataType type) |
| 183 | 374 { |
| 375 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 376 "SELECT value FROM Metadata WHERE id=? AND type=?"); | |
| 585 | 377 s.BindInt64(0, id); |
| 183 | 378 s.BindInt(1, type); |
| 379 | |
| 380 if (!s.Step()) | |
| 381 { | |
| 382 return false; | |
| 383 } | |
| 384 else | |
| 385 { | |
| 386 target = s.ColumnString(0); | |
| 387 return true; | |
| 388 } | |
| 389 } | |
| 390 | |
|
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391 bool DatabaseWrapper::ListAvailableMetadata(std::list<MetadataType>& target, |
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392 int64_t id) |
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393 { |
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394 target.clear(); |
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395 |
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396 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT type FROM Metadata WHERE id=?"); |
| 585 | 397 s.BindInt64(0, id); |
|
436
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398 |
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399 while (s.Step()) |
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400 { |
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401 target.push_back(static_cast<MetadataType>(s.ColumnInt(0))); |
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402 } |
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403 |
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404 return true; |
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405 } |
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406 |
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407 |
| 183 | 408 std::string DatabaseWrapper::GetMetadata(int64_t id, |
| 409 MetadataType type, | |
| 410 const std::string& defaultValue) | |
| 411 { | |
| 412 std::string s; | |
|
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413 if (LookupMetadata(s, id, type)) |
| 183 | 414 { |
| 415 return s; | |
| 416 } | |
| 417 else | |
| 418 { | |
| 419 return defaultValue; | |
| 420 } | |
| 421 } | |
| 422 | |
|
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423 |
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424 bool DatabaseWrapper::GetMetadataAsInteger(int& result, |
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425 int64_t id, |
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426 MetadataType type) |
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427 { |
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428 std::string s = GetMetadata(id, type, ""); |
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429 if (s.size() == 0) |
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430 { |
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431 return false; |
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432 } |
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433 |
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434 try |
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435 { |
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436 result = boost::lexical_cast<int>(s); |
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437 return true; |
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438 } |
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439 catch (boost::bad_lexical_cast&) |
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440 { |
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441 return false; |
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442 } |
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443 } |
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444 |
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445 |
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446 |
|
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447 void DatabaseWrapper::AddAttachment(int64_t id, |
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448 const FileInfo& attachment) |
| 183 | 449 { |
|
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450 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO AttachedFiles VALUES(?, ?, ?, ?, ?, ?, ?, ?)"); |
| 585 | 451 s.BindInt64(0, id); |
| 233 | 452 s.BindInt(1, attachment.GetContentType()); |
|
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453 s.BindString(2, attachment.GetUuid()); |
| 585 | 454 s.BindInt64(3, attachment.GetCompressedSize()); |
| 455 s.BindInt64(4, attachment.GetUncompressedSize()); | |
|
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456 s.BindInt(5, attachment.GetCompressionType()); |
|
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457 s.BindString(6, attachment.GetUncompressedMD5()); |
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458 s.BindString(7, attachment.GetCompressedMD5()); |
| 183 | 459 s.Run(); |
| 460 } | |
| 461 | |
|
440
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462 void DatabaseWrapper::ListAvailableAttachments(std::list<FileContentType>& result, |
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463 int64_t id) |
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464 { |
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465 result.clear(); |
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466 |
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467 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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468 "SELECT fileType FROM AttachedFiles WHERE id=?"); |
| 585 | 469 s.BindInt64(0, id); |
|
440
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470 |
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471 while (s.Step()) |
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472 { |
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473 result.push_back(static_cast<FileContentType>(s.ColumnInt(0))); |
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474 } |
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475 } |
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476 |
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477 bool DatabaseWrapper::LookupAttachment(FileInfo& attachment, |
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478 int64_t id, |
| 233 | 479 FileContentType contentType) |
| 183 | 480 { |
| 481 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
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482 "SELECT uuid, uncompressedSize, compressionType, compressedSize, uncompressedMD5, compressedMD5 FROM AttachedFiles WHERE id=? AND fileType=?"); |
| 585 | 483 s.BindInt64(0, id); |
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484 s.BindInt(1, contentType); |
| 183 | 485 |
| 486 if (!s.Step()) | |
| 487 { | |
| 488 return false; | |
| 489 } | |
| 490 else | |
| 491 { | |
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492 attachment = FileInfo(s.ColumnString(0), |
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493 contentType, |
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494 s.ColumnInt(1), |
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495 s.ColumnString(4), |
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496 static_cast<CompressionType>(s.ColumnInt(2)), |
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497 s.ColumnInt(3), |
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498 s.ColumnString(5)); |
| 183 | 499 return true; |
| 500 } | |
| 501 } | |
| 502 | |
| 503 void DatabaseWrapper::SetMainDicomTags(int64_t id, | |
| 504 const DicomMap& tags) | |
| 505 { | |
| 506 DicomArray flattened(tags); | |
| 507 for (size_t i = 0; i < flattened.GetSize(); i++) | |
| 508 { | |
| 509 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags VALUES(?, ?, ?, ?)"); | |
| 585 | 510 s.BindInt64(0, id); |
| 183 | 511 s.BindInt(1, flattened.GetElement(i).GetTag().GetGroup()); |
| 512 s.BindInt(2, flattened.GetElement(i).GetTag().GetElement()); | |
| 513 s.BindString(3, flattened.GetElement(i).GetValue().AsString()); | |
| 514 s.Run(); | |
| 515 } | |
| 516 } | |
| 517 | |
| 518 void DatabaseWrapper::GetMainDicomTags(DicomMap& map, | |
| 519 int64_t id) | |
| 520 { | |
| 521 map.Clear(); | |
| 522 | |
| 523 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM MainDicomTags WHERE id=?"); | |
| 585 | 524 s.BindInt64(0, id); |
| 183 | 525 while (s.Step()) |
| 526 { | |
| 527 map.SetValue(s.ColumnInt(1), | |
| 528 s.ColumnInt(2), | |
| 529 s.ColumnString(3)); | |
| 530 } | |
| 531 } | |
| 532 | |
| 533 | |
| 534 bool DatabaseWrapper::GetParentPublicId(std::string& result, | |
| 535 int64_t id) | |
| 536 { | |
| 537 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " | |
| 538 "WHERE a.internalId = b.parentId AND b.internalId = ?"); | |
| 585 | 539 s.BindInt64(0, id); |
| 183 | 540 |
| 541 if (s.Step()) | |
| 542 { | |
| 543 result = s.ColumnString(0); | |
| 544 return true; | |
| 545 } | |
| 546 else | |
| 547 { | |
| 548 return false; | |
| 549 } | |
| 550 } | |
| 551 | |
| 552 | |
| 553 void DatabaseWrapper::GetChildrenPublicId(std::list<std::string>& result, | |
| 554 int64_t id) | |
| 555 { | |
| 556 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " | |
| 557 "WHERE a.parentId = b.internalId AND b.internalId = ?"); | |
| 585 | 558 s.BindInt64(0, id); |
| 183 | 559 |
| 560 result.clear(); | |
| 561 | |
| 562 while (s.Step()) | |
| 563 { | |
| 564 result.push_back(s.ColumnString(0)); | |
| 565 } | |
| 566 } | |
| 567 | |
| 568 | |
| 199 | 569 void DatabaseWrapper::GetChildrenInternalId(std::list<int64_t>& result, |
| 570 int64_t id) | |
| 571 { | |
| 572 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.internalId FROM Resources AS a, Resources AS b " | |
| 573 "WHERE a.parentId = b.internalId AND b.internalId = ?"); | |
| 585 | 574 s.BindInt64(0, id); |
| 199 | 575 |
| 576 result.clear(); | |
| 577 | |
| 578 while (s.Step()) | |
| 579 { | |
| 580 result.push_back(s.ColumnInt(0)); | |
| 581 } | |
| 582 } | |
| 583 | |
| 584 | |
| 183 | 585 void DatabaseWrapper::LogChange(ChangeType changeType, |
|
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586 int64_t internalId, |
| 183 | 587 ResourceType resourceType, |
| 588 const boost::posix_time::ptime& date) | |
| 589 { | |
| 590 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Changes VALUES(NULL, ?, ?, ?, ?)"); | |
| 591 s.BindInt(0, changeType); | |
| 585 | 592 s.BindInt64(1, internalId); |
| 183 | 593 s.BindInt(2, resourceType); |
| 594 s.BindString(3, boost::posix_time::to_iso_string(date)); | |
| 595 s.Run(); | |
| 596 } | |
| 597 | |
| 598 | |
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599 void DatabaseWrapper::GetChangesInternal(Json::Value& target, |
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600 SQLite::Statement& s, |
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601 int64_t since, |
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602 unsigned int maxResults) |
| 204 | 603 { |
| 604 Json::Value changes = Json::arrayValue; | |
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605 int64_t last = since; |
| 204 | 606 |
| 607 while (changes.size() < maxResults && s.Step()) | |
| 608 { | |
| 609 int64_t seq = s.ColumnInt(0); | |
| 610 ChangeType changeType = static_cast<ChangeType>(s.ColumnInt(1)); | |
| 611 int64_t internalId = s.ColumnInt(2); | |
| 612 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(3)); | |
| 613 const std::string& date = s.ColumnString(4); | |
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614 std::string publicId = GetPublicId(internalId); |
| 204 | 615 |
| 616 Json::Value item = Json::objectValue; | |
| 617 item["Seq"] = static_cast<int>(seq); | |
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618 item["ChangeType"] = EnumerationToString(changeType); |
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619 item["ResourceType"] = EnumerationToString(resourceType); |
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620 item["ID"] = publicId; |
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621 item["Path"] = GetBasePath(resourceType, publicId); |
| 204 | 622 item["Date"] = date; |
| 623 last = seq; | |
| 624 | |
| 625 changes.append(item); | |
| 626 } | |
| 627 | |
| 628 target = Json::objectValue; | |
| 629 target["Changes"] = changes; | |
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630 target["Done"] = !(changes.size() == maxResults && s.Step()); |
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631 target["Last"] = static_cast<int>(last); |
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632 } |
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633 |
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634 |
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635 void DatabaseWrapper::GetChanges(Json::Value& target, |
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636 int64_t since, |
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637 unsigned int maxResults) |
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638 { |
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639 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes WHERE seq>? ORDER BY seq LIMIT ?"); |
| 585 | 640 s.BindInt64(0, since); |
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641 s.BindInt(1, maxResults + 1); |
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642 GetChangesInternal(target, s, since, maxResults); |
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643 } |
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644 |
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645 void DatabaseWrapper::GetLastChange(Json::Value& target) |
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646 { |
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647 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes ORDER BY seq DESC LIMIT 1"); |
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648 GetChangesInternal(target, s, 0, 1); |
| 204 | 649 } |
| 650 | |
| 651 | |
| 231 | 652 void DatabaseWrapper::LogExportedResource(ResourceType resourceType, |
| 653 const std::string& publicId, | |
| 654 const std::string& remoteModality, | |
| 655 const std::string& patientId, | |
| 656 const std::string& studyInstanceUid, | |
| 657 const std::string& seriesInstanceUid, | |
| 658 const std::string& sopInstanceUid, | |
| 183 | 659 const boost::posix_time::ptime& date) |
| 660 { | |
| 231 | 661 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
| 662 "INSERT INTO ExportedResources VALUES(NULL, ?, ?, ?, ?, ?, ?, ?, ?)"); | |
| 663 | |
| 664 s.BindInt(0, resourceType); | |
| 665 s.BindString(1, publicId); | |
| 666 s.BindString(2, remoteModality); | |
| 667 s.BindString(3, patientId); | |
| 668 s.BindString(4, studyInstanceUid); | |
| 669 s.BindString(5, seriesInstanceUid); | |
| 670 s.BindString(6, sopInstanceUid); | |
| 671 s.BindString(7, boost::posix_time::to_iso_string(date)); | |
| 672 | |
| 183 | 673 s.Run(); |
| 674 } | |
| 231 | 675 |
| 676 | |
| 677 void DatabaseWrapper::GetExportedResources(Json::Value& target, | |
|
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678 SQLite::Statement& s, |
| 231 | 679 int64_t since, |
| 680 unsigned int maxResults) | |
| 681 { | |
| 682 Json::Value changes = Json::arrayValue; | |
|
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683 int64_t last = since; |
| 231 | 684 |
| 685 while (changes.size() < maxResults && s.Step()) | |
| 686 { | |
| 687 int64_t seq = s.ColumnInt(0); | |
| 688 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(1)); | |
| 689 std::string publicId = s.ColumnString(2); | |
| 690 | |
| 691 Json::Value item = Json::objectValue; | |
| 692 item["Seq"] = static_cast<int>(seq); | |
|
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693 item["ResourceType"] = EnumerationToString(resourceType); |
| 231 | 694 item["ID"] = publicId; |
| 695 item["Path"] = GetBasePath(resourceType, publicId); | |
| 696 item["RemoteModality"] = s.ColumnString(3); | |
| 697 item["Date"] = s.ColumnString(8); | |
| 698 | |
| 699 // WARNING: Do not add "break" below and do not reorder the case items! | |
| 700 switch (resourceType) | |
| 701 { | |
| 702 case ResourceType_Instance: | |
| 703 item["SopInstanceUid"] = s.ColumnString(7); | |
| 704 | |
| 705 case ResourceType_Series: | |
| 706 item["SeriesInstanceUid"] = s.ColumnString(6); | |
| 707 | |
| 708 case ResourceType_Study: | |
| 709 item["StudyInstanceUid"] = s.ColumnString(5); | |
| 710 | |
| 711 case ResourceType_Patient: | |
| 712 item["PatientId"] = s.ColumnString(4); | |
| 713 break; | |
| 714 | |
| 715 default: | |
| 716 throw OrthancException(ErrorCode_InternalError); | |
| 717 } | |
| 718 | |
| 719 last = seq; | |
| 720 | |
| 721 changes.append(item); | |
| 722 } | |
| 723 | |
| 724 target = Json::objectValue; | |
|
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725 target["Exports"] = changes; |
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726 target["Done"] = !(changes.size() == maxResults && s.Step()); |
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727 target["Last"] = static_cast<int>(last); |
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728 } |
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729 |
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730 |
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731 void DatabaseWrapper::GetExportedResources(Json::Value& target, |
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732 int64_t since, |
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733 unsigned int maxResults) |
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734 { |
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735 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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736 "SELECT * FROM ExportedResources WHERE seq>? ORDER BY seq LIMIT ?"); |
| 585 | 737 s.BindInt64(0, since); |
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738 s.BindInt(1, maxResults + 1); |
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739 GetExportedResources(target, s, since, maxResults); |
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740 } |
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741 |
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742 |
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743 void DatabaseWrapper::GetLastExportedResource(Json::Value& target) |
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744 { |
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745 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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746 "SELECT * FROM ExportedResources ORDER BY seq DESC LIMIT 1"); |
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747 GetExportedResources(target, s, 0, 1); |
| 231 | 748 } |
| 749 | |
| 750 | |
| 183 | 751 |
| 752 | |
| 753 int64_t DatabaseWrapper::GetTableRecordCount(const std::string& table) | |
| 754 { | |
| 755 char buf[128]; | |
| 756 sprintf(buf, "SELECT COUNT(*) FROM %s", table.c_str()); | |
| 757 SQLite::Statement s(db_, buf); | |
| 758 | |
| 218 | 759 if (!s.Step()) |
| 760 { | |
| 761 throw OrthancException(ErrorCode_InternalError); | |
| 762 } | |
| 763 | |
| 183 | 764 int64_t c = s.ColumnInt(0); |
| 765 assert(!s.Step()); | |
| 766 | |
| 767 return c; | |
| 768 } | |
| 769 | |
| 770 | |
| 771 uint64_t DatabaseWrapper::GetTotalCompressedSize() | |
| 772 { | |
| 773 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(compressedSize) FROM AttachedFiles"); | |
| 774 s.Run(); | |
| 775 return static_cast<uint64_t>(s.ColumnInt64(0)); | |
| 776 } | |
| 777 | |
| 778 | |
| 779 uint64_t DatabaseWrapper::GetTotalUncompressedSize() | |
| 780 { | |
| 781 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(uncompressedSize) FROM AttachedFiles"); | |
| 782 s.Run(); | |
| 783 return static_cast<uint64_t>(s.ColumnInt64(0)); | |
| 784 } | |
| 785 | |
| 190 | 786 void DatabaseWrapper::GetAllPublicIds(Json::Value& target, |
| 787 ResourceType resourceType) | |
| 788 { | |
| 789 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE resourceType=?"); | |
| 790 s.BindInt(0, resourceType); | |
| 791 | |
| 792 target = Json::arrayValue; | |
| 793 while (s.Step()) | |
| 794 { | |
| 795 target.append(s.ColumnString(0)); | |
| 796 } | |
| 797 } | |
| 798 | |
| 183 | 799 |
| 800 DatabaseWrapper::DatabaseWrapper(const std::string& path, | |
| 801 IServerIndexListener& listener) : | |
| 802 listener_(listener) | |
| 803 { | |
| 804 db_.Open(path); | |
| 805 Open(); | |
| 806 } | |
| 807 | |
| 808 DatabaseWrapper::DatabaseWrapper(IServerIndexListener& listener) : | |
| 809 listener_(listener) | |
| 810 { | |
| 811 db_.OpenInMemory(); | |
| 812 Open(); | |
| 813 } | |
| 814 | |
| 815 void DatabaseWrapper::Open() | |
| 816 { | |
| 374 | 817 // Performance tuning of SQLite with PRAGMAs |
| 818 // http://www.sqlite.org/pragma.html | |
| 819 db_.Execute("PRAGMA SYNCHRONOUS=NORMAL;"); | |
| 820 db_.Execute("PRAGMA JOURNAL_MODE=WAL;"); | |
| 821 db_.Execute("PRAGMA LOCKING_MODE=EXCLUSIVE;"); | |
| 822 db_.Execute("PRAGMA WAL_AUTOCHECKPOINT=1000;"); | |
| 823 //db_.Execute("PRAGMA TEMP_STORE=memory"); | |
| 824 | |
| 183 | 825 if (!db_.DoesTableExist("GlobalProperties")) |
| 826 { | |
| 827 LOG(INFO) << "Creating the database"; | |
| 828 std::string query; | |
|
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829 EmbeddedResources::GetFileResource(query, EmbeddedResources::PREPARE_DATABASE); |
| 183 | 830 db_.Execute(query); |
| 831 } | |
| 832 | |
| 567 | 833 // Check the version of the database |
| 252 | 834 std::string version = GetGlobalProperty(GlobalProperty_DatabaseSchemaVersion, "Unknown"); |
| 835 bool ok = false; | |
| 836 try | |
| 837 { | |
| 838 LOG(INFO) << "Version of the Orthanc database: " << version; | |
| 839 unsigned int v = boost::lexical_cast<unsigned int>(version); | |
| 840 | |
|
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841 /** |
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842 * History of the database versions: |
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843 * - Version 3: from Orthanc 0.3.2 to Orthanc 0.7.2 (inclusive) |
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844 * - Version 4: from Orthanc 0.7.3 (inclusive) |
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845 **/ |
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846 |
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847 // This version of Orthanc is only compatible with versions 3 of 4 of the DB schema |
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848 ok = (v == 3 || v == 4); |
|
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849 |
|
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850 if (v == 3) |
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851 { |
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852 LOG(WARNING) << "Upgrading database version from 3 to 4"; |
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853 std::string upgrade; |
|
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854 EmbeddedResources::GetFileResource(upgrade, EmbeddedResources::UPGRADE_DATABASE_3_TO_4); |
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855 db_.BeginTransaction(); |
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856 db_.Execute(upgrade); |
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857 db_.CommitTransaction(); |
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|
858 } |
| 252 | 859 } |
| 860 catch (boost::bad_lexical_cast&) | |
| 861 { | |
| 862 } | |
| 863 | |
| 864 if (!ok) | |
| 865 { | |
|
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|
866 LOG(ERROR) << "Incompatible version of the Orthanc database: " << version; |
| 252 | 867 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
| 868 } | |
| 869 | |
| 183 | 870 signalRemainingAncestor_ = new Internals::SignalRemainingAncestor; |
| 871 db_.Register(signalRemainingAncestor_); | |
| 872 db_.Register(new Internals::SignalFileDeleted(listener_)); | |
| 873 } | |
| 238 | 874 |
| 875 uint64_t DatabaseWrapper::GetResourceCount(ResourceType resourceType) | |
| 876 { | |
| 877 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 878 "SELECT COUNT(*) FROM Resources WHERE resourceType=?"); | |
| 879 s.BindInt(0, resourceType); | |
| 880 | |
| 881 if (!s.Step()) | |
| 882 { | |
| 883 throw OrthancException(ErrorCode_InternalError); | |
| 884 } | |
| 885 | |
| 886 int64_t c = s.ColumnInt(0); | |
| 887 assert(!s.Step()); | |
| 888 | |
| 889 return c; | |
| 890 } | |
|
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891 |
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892 bool DatabaseWrapper::SelectPatientToRecycle(int64_t& internalId) |
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893 { |
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894 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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895 "SELECT patientId FROM PatientRecyclingOrder ORDER BY seq ASC LIMIT 1"); |
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896 |
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897 if (!s.Step()) |
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898 { |
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899 // No patient remaining or all the patients are protected |
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900 return false; |
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|
901 } |
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902 else |
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|
903 { |
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|
904 internalId = s.ColumnInt(0); |
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905 return true; |
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|
906 } |
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|
907 } |
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|
908 |
|
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909 bool DatabaseWrapper::SelectPatientToRecycle(int64_t& internalId, |
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910 int64_t patientIdToAvoid) |
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911 { |
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|
912 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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913 "SELECT patientId FROM PatientRecyclingOrder " |
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|
914 "WHERE patientId != ? ORDER BY seq ASC LIMIT 1"); |
| 585 | 915 s.BindInt64(0, patientIdToAvoid); |
|
268
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916 |
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917 if (!s.Step()) |
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|
918 { |
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919 // No patient remaining or all the patients are protected |
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920 return false; |
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921 } |
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|
922 else |
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|
923 { |
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924 internalId = s.ColumnInt(0); |
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925 return true; |
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|
926 } |
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927 } |
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|
928 |
|
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929 bool DatabaseWrapper::IsProtectedPatient(int64_t internalId) |
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930 { |
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931 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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932 "SELECT * FROM PatientRecyclingOrder WHERE patientId = ?"); |
| 585 | 933 s.BindInt64(0, internalId); |
|
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934 return !s.Step(); |
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935 } |
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936 |
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937 void DatabaseWrapper::SetProtectedPatient(int64_t internalId, |
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938 bool isProtected) |
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939 { |
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940 if (isProtected) |
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941 { |
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942 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
| 585 | 943 s.BindInt64(0, internalId); |
|
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944 s.Run(); |
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945 } |
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946 else if (IsProtectedPatient(internalId)) |
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947 { |
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948 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO PatientRecyclingOrder VALUES(NULL, ?)"); |
| 585 | 949 s.BindInt64(0, internalId); |
|
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950 s.Run(); |
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951 } |
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952 else |
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953 { |
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954 // Nothing to do: The patient is already unprotected |
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955 } |
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956 } |
| 310 | 957 |
| 958 | |
| 959 uint64_t DatabaseWrapper::IncrementGlobalSequence(GlobalProperty property) | |
| 960 { | |
| 961 std::string oldValue; | |
| 962 | |
| 963 if (LookupGlobalProperty(oldValue, property)) | |
| 964 { | |
| 965 uint64_t oldNumber; | |
| 966 | |
| 967 try | |
| 968 { | |
| 969 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
| 970 SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); | |
| 971 return oldNumber + 1; | |
| 972 } | |
| 973 catch (boost::bad_lexical_cast&) | |
| 974 { | |
| 975 throw OrthancException(ErrorCode_InternalError); | |
| 976 } | |
| 977 } | |
| 978 else | |
| 979 { | |
| 980 // Initialize the sequence at "1" | |
| 981 SetGlobalProperty(property, "1"); | |
| 982 return 1; | |
| 983 } | |
| 984 } | |
|
413
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|
985 |
|
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|
986 |
|
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|
987 void DatabaseWrapper::ClearTable(const std::string& tableName) |
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988 { |
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|
989 db_.Execute("DELETE FROM " + tableName); |
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|
990 } |
| 513 | 991 |
| 992 | |
| 993 bool DatabaseWrapper::IsExistingResource(int64_t internalId) | |
| 994 { | |
| 995 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 996 "SELECT * FROM Resources WHERE internalId=?"); | |
| 585 | 997 s.BindInt64(0, internalId); |
| 513 | 998 return s.Step(); |
| 999 } | |
| 521 | 1000 |
| 1001 | |
| 1002 void DatabaseWrapper::LookupTagValue(std::list<int64_t>& result, | |
| 1003 DicomTag tag, | |
| 1004 const std::string& value) | |
| 1005 { | |
| 1006 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 1007 "SELECT id FROM MainDicomTags WHERE tagGroup=? AND tagElement=? and value=?"); | |
| 1008 | |
| 1009 s.BindInt(0, tag.GetGroup()); | |
| 1010 s.BindInt(1, tag.GetElement()); | |
| 1011 s.BindString(2, value); | |
| 1012 | |
| 1013 result.clear(); | |
| 1014 | |
| 1015 while (s.Step()) | |
| 1016 { | |
| 1017 result.push_back(s.ColumnInt64(0)); | |
| 1018 } | |
| 1019 } | |
| 1020 | |
| 1021 | |
| 1022 void DatabaseWrapper::LookupTagValue(std::list<int64_t>& result, | |
| 1023 const std::string& value) | |
| 1024 { | |
| 1025 SQLite::Statement s(db_, SQLITE_FROM_HERE, | |
| 1026 "SELECT id FROM MainDicomTags WHERE value=?"); | |
| 1027 | |
| 1028 s.BindString(0, value); | |
| 1029 | |
| 1030 result.clear(); | |
| 1031 | |
| 1032 while (s.Step()) | |
| 1033 { | |
| 1034 result.push_back(s.ColumnInt64(0)); | |
| 1035 } | |
| 1036 } | |
| 183 | 1037 } |