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annotate OrthancFramework/Sources/DicomParsing/DicomModification.cpp @ 5100:9d51c000e91a

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more verbose HTTPClient errors + avoid duplicate logging of same error
author Alain Mazy <am@osimis.io>
date Wed, 19 Oct 2022 12:40:14 +0200
parents df4a90a65af9
children 8638522eeda1
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "../PrecompiledHeaders.h"
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25 #include "DicomModification.h"
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26
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27 #include "../Compatibility.h"
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28 #include "../Logging.h"
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29 #include "../OrthancException.h"
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30 #include "../SerializationToolbox.h"
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31 #include "FromDcmtkBridge.h"
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32 #include "ITagVisitor.h"
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33
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34 #include <memory> // For std::unique_ptr
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35
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36
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37 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2008 =
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38 "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1";
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39
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40 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2017c =
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41 "Orthanc " ORTHANC_VERSION " - PS 3.15-2017c Table E.1-1 Basic Profile";
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42
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43 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2021b =
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44 "Orthanc " ORTHANC_VERSION " - PS 3.15-2021b Table E.1-1 Basic Profile";
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45
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46 namespace Orthanc
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47 {
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48 namespace
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49 {
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50 enum TagOperation
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51 {
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52 TagOperation_Keep,
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53 TagOperation_Remove
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54 };
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55 }
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56
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57
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58 DicomModification::DicomTagRange::DicomTagRange(uint16_t groupFrom,
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59 uint16_t groupTo,
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60 uint16_t elementFrom,
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61 uint16_t elementTo) :
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62 groupFrom_(groupFrom),
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63 groupTo_(groupTo),
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64 elementFrom_(elementFrom),
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65 elementTo_(elementTo)
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66 {
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67 }
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68
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69
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70 bool DicomModification::DicomTagRange::Contains(const DicomTag& tag) const
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71 {
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72 return (tag.GetGroup() >= groupFrom_ &&
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73 tag.GetGroup() <= groupTo_ &&
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74 tag.GetElement() >= elementFrom_ &&
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75 tag.GetElement() <= elementTo_);
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76 }
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78
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79 class DicomModification::RelationshipsVisitor : public ITagVisitor
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80 {
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81 private:
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82 DicomModification& that_;
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83
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84 // This method is only applicable to first-level tags
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85 bool IsManuallyModified(const DicomTag& tag) const
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86 {
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87 return (that_.IsCleared(tag) ||
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88 that_.IsRemoved(tag) ||
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89 that_.IsReplaced(tag));
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90 }
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91
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92 bool IsKeptSequence(const std::vector<DicomTag>& parentTags,
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93 const std::vector<size_t>& parentIndexes,
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94 const DicomTag& tag)
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95 {
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96 for (DicomModification::ListOfPaths::const_iterator
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97 it = that_.keepSequences_.begin(); it != that_.keepSequences_.end(); ++it)
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98 {
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99 if (DicomPath::IsMatch(*it, parentTags, parentIndexes, tag))
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100 {
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101 return true;
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102 }
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103 }
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104
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105 return false;
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106 }
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107
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108 Action GetDefaultAction(const std::vector<DicomTag>& parentTags,
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109 const std::vector<size_t>& parentIndexes,
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110 const DicomTag& tag)
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111 {
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112 if (parentTags.empty() ||
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113 !that_.isAnonymization_)
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114 {
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115 // Don't interfere with first-level tags or with modification
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116 return Action_None;
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117 }
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118 else if (IsKeptSequence(parentTags, parentIndexes, tag))
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119 {
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120 return Action_None;
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121 }
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122 else if (that_.ArePrivateTagsRemoved() &&
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123 tag.IsPrivate())
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124 {
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125 // New in Orthanc 1.9.5
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126 // https://groups.google.com/g/orthanc-users/c/l1mcYCC2u-k/m/jOdGYuagAgAJ
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127 return Action_Remove;
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128 }
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129 else if (that_.IsCleared(tag) ||
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130 that_.IsRemoved(tag))
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131 {
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132 // New in Orthanc 1.9.5
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133 // https://groups.google.com/g/orthanc-users/c/l1mcYCC2u-k/m/jOdGYuagAgAJ
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134 return Action_Remove;
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135 }
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136 else
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137 {
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138 return Action_None;
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139 }
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140 }
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141
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142 public:
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143 explicit RelationshipsVisitor(DicomModification& that) :
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144 that_(that)
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145 {
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146 }
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147
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148 virtual Action VisitNotSupported(const std::vector<DicomTag>& parentTags,
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149 const std::vector<size_t>& parentIndexes,
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150 const DicomTag& tag,
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151 ValueRepresentation vr) ORTHANC_OVERRIDE
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152 {
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153 return GetDefaultAction(parentTags, parentIndexes, tag);
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154 }
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155
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156 virtual Action VisitSequence(const std::vector<DicomTag>& parentTags,
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157 const std::vector<size_t>& parentIndexes,
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158 const DicomTag& tag,
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159 size_t countItems) ORTHANC_OVERRIDE
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160 {
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161 return GetDefaultAction(parentTags, parentIndexes, tag);
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162 }
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163
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164 virtual Action VisitBinary(const std::vector<DicomTag>& parentTags,
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165 const std::vector<size_t>& parentIndexes,
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166 const DicomTag& tag,
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167 ValueRepresentation vr,
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168 const void* data,
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169 size_t size) ORTHANC_OVERRIDE
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170 {
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171 return GetDefaultAction(parentTags, parentIndexes, tag);
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172 }
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173
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174 virtual Action VisitIntegers(const std::vector<DicomTag>& parentTags,
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175 const std::vector<size_t>& parentIndexes,
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176 const DicomTag& tag,
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177 ValueRepresentation vr,
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178 const std::vector<int64_t>& values) ORTHANC_OVERRIDE
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179 {
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180 return GetDefaultAction(parentTags, parentIndexes, tag);
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181 }
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182
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183 virtual Action VisitDoubles(const std::vector<DicomTag>& parentTags,
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184 const std::vector<size_t>& parentIndexes,
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185 const DicomTag& tag,
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186 ValueRepresentation vr,
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187 const std::vector<double>& value) ORTHANC_OVERRIDE
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188 {
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189 return GetDefaultAction(parentTags, parentIndexes, tag);
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190 }
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191
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192 virtual Action VisitAttributes(const std::vector<DicomTag>& parentTags,
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193 const std::vector<size_t>& parentIndexes,
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194 const DicomTag& tag,
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195 const std::vector<DicomTag>& value) ORTHANC_OVERRIDE
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196 {
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197 return GetDefaultAction(parentTags, parentIndexes, tag);
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198 }
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199
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200 virtual Action VisitString(std::string& newValue,
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201 const std::vector<DicomTag>& parentTags,
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202 const std::vector<size_t>& parentIndexes,
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203 const DicomTag& tag,
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204 ValueRepresentation vr,
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205 const std::string& value) ORTHANC_OVERRIDE
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206 {
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207 /**
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208 * Note that all the tags in "uids_" have the VR UI (unique
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209 * identifier), and are considered as strings.
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210 *
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211 * Also, the tags "SOP Instance UID", "Series Instance UID" and
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212 * "Study Instance UID" are *never* included in "uids_", as they
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213 * are separately handed by "MapDicomTags()".
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214 **/
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215
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216 assert(that_.uids_.find(DICOM_TAG_STUDY_INSTANCE_UID) == that_.uids_.end());
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217 assert(that_.uids_.find(DICOM_TAG_SERIES_INSTANCE_UID) == that_.uids_.end());
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218 assert(that_.uids_.find(DICOM_TAG_SOP_INSTANCE_UID) == that_.uids_.end());
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219
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220 if (parentTags.empty())
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221 {
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222 // We are on a first-level tag
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223 if (that_.uids_.find(tag) != that_.uids_.end() &&
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224 !IsManuallyModified(tag))
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225 {
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226 if (tag == DICOM_TAG_PATIENT_ID ||
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227 tag == DICOM_TAG_PATIENT_NAME)
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228 {
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229 assert(vr == ValueRepresentation_LongString ||
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230 vr == ValueRepresentation_PersonName);
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231 newValue = that_.MapDicomIdentifier(value, ResourceType_Patient);
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232 }
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233 else
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234 {
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235 // This is a first-level UID tag that must be anonymized
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236 assert(vr == ValueRepresentation_UniqueIdentifier ||
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237 vr == ValueRepresentation_NotSupported /* for older versions of DCMTK */);
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238 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance);
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239 }
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240
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241 return Action_Replace;
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242 }
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243 else
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244 {
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245 return Action_None;
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246 }
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247 }
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248 else
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249 {
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250 // We are within a sequence
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251
4737
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252 if (IsKeptSequence(parentTags, parentIndexes, tag))
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253 {
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254 // New in Orthanc 1.9.4 - Solves issue LSD-629
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255 return Action_None;
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256 }
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257
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258 if (that_.isAnonymization_)
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259 {
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260 // New in Orthanc 1.9.5, similar to "GetDefaultAction()"
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261 // https://groups.google.com/g/orthanc-users/c/l1mcYCC2u-k/m/jOdGYuagAgAJ
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262 if (that_.ArePrivateTagsRemoved() &&
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263 tag.IsPrivate())
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264 {
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265 return Action_Remove;
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266 }
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267 else if (that_.IsRemoved(tag))
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268 {
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269 return Action_Remove;
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270 }
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271 else if (that_.IsCleared(tag))
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272 {
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273 // This is different from "GetDefaultAction()", because we know how to clear string tags
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274 newValue.clear();
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275 return Action_Replace;
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276 }
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277 }
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278
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279 if (tag == DICOM_TAG_STUDY_INSTANCE_UID)
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280 {
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281 newValue = that_.MapDicomIdentifier(value, ResourceType_Study);
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282 return Action_Replace;
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283 }
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284 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID)
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285 {
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286 newValue = that_.MapDicomIdentifier(value, ResourceType_Series);
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287 return Action_Replace;
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288 }
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289 else if (tag == DICOM_TAG_SOP_INSTANCE_UID)
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290 {
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291 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance);
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292 return Action_Replace;
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293 }
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294 else if (that_.uids_.find(tag) != that_.uids_.end())
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295 {
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296 if (tag == DICOM_TAG_PATIENT_ID ||
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297 tag == DICOM_TAG_PATIENT_NAME)
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298 {
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299 newValue = that_.MapDicomIdentifier(value, ResourceType_Patient);
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300 }
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301 else
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parents: 4678
diff changeset
302 {
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303 assert(vr == ValueRepresentation_UniqueIdentifier ||
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304 vr == ValueRepresentation_NotSupported /* for older versions of DCMTK */);
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305
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306 if (parentTags.size() == 2 &&
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diff changeset
307 parentTags[0] == DICOM_TAG_REFERENCED_FRAME_OF_REFERENCE_SEQUENCE &&
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diff changeset
308 parentTags[1] == DICOM_TAG_RT_REFERENCED_STUDY_SEQUENCE &&
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diff changeset
309 tag == DICOM_TAG_REFERENCED_SOP_INSTANCE_UID)
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diff changeset
310 {
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311 /**
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312 * In RT-STRUCT, this ReferencedSOPInstanceUID is actually
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313 * referencing a StudyInstanceUID !! (observed in many
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314 * data sets including:
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315 * https://wiki.cancerimagingarchive.net/display/Public/Lung+CT+Segmentation+Challenge+2017)
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316 * Tested in "test_anonymize_relationships_5". Introduced
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317 * in: https://hg.orthanc-server.com/orthanc/rev/3513
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318 **/
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319 newValue = that_.MapDicomIdentifier(value, ResourceType_Study);
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320 }
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321 else
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diff changeset
322 {
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323 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance);
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diff changeset
324 }
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325 }
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diff changeset
326
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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327 return Action_Replace;
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parents: 4678
diff changeset
328 }
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parents: 4678
diff changeset
329 else
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parents: 4678
diff changeset
330 {
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
331 return Action_None;
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parents: 4678
diff changeset
332 }
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
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diff changeset
333 }
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parents: 2447
diff changeset
334 }
51b91ead6c38 Preservation of UID relationships while anonymizing
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parents: 2447
diff changeset
335
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diff changeset
336 void RemoveRelationships(ParsedDicomFile& dicom) const
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diff changeset
337 {
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diff changeset
338 for (SetOfTags::const_iterator it = that_.uids_.begin(); it != that_.uids_.end(); ++it)
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diff changeset
339 {
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diff changeset
340 assert(*it != DICOM_TAG_STUDY_INSTANCE_UID &&
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341 *it != DICOM_TAG_SERIES_INSTANCE_UID &&
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342 *it != DICOM_TAG_SOP_INSTANCE_UID);
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diff changeset
343
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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diff changeset
344 if (!IsManuallyModified(*it))
4678
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345 {
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346 dicom.Remove(*it);
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347 }
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diff changeset
348 }
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diff changeset
349
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diff changeset
350 // The only two sequences with to the "X/Z/U*" rule in the
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351 // basic profile. They were already present in Orthanc 1.9.3.
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diff changeset
352 if (!IsManuallyModified(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE))
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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diff changeset
353 {
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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diff changeset
354 dicom.Remove(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE);
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diff changeset
355 }
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parents: 4678
diff changeset
356
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
357 if (!IsManuallyModified(DICOM_TAG_SOURCE_IMAGE_SEQUENCE))
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diff changeset
358 {
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diff changeset
359 dicom.Remove(DICOM_TAG_SOURCE_IMAGE_SEQUENCE);
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diff changeset
360 }
2506
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diff changeset
361 }
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diff changeset
362 };
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parents: 2447
diff changeset
363
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parents: 2447
diff changeset
364
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diff changeset
365 void DicomModification::CancelReplacement(const DicomTag& tag)
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parents: 1695
diff changeset
366 {
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diff changeset
367 Replacements::iterator it = replacements_.find(tag);
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parents: 2321
diff changeset
368
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parents: 1695
diff changeset
369 if (it != replacements_.end())
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
370 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
371 assert(it->second != NULL);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
372 delete it->second;
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
373 replacements_.erase(it);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
374 }
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
375 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
376
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
377
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
378 void DicomModification::ReplaceInternal(const DicomTag& tag,
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
379 const Json::Value& value)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
380 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
381 Replacements::iterator it = replacements_.find(tag);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
382
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
383 if (it != replacements_.end())
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
384 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
385 assert(it->second != NULL);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
386 delete it->second;
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
387 it->second = NULL; // In the case of an exception during the clone
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
388 it->second = new Json::Value(value); // Clone
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
389 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
390 else
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
391 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
392 replacements_[tag] = new Json::Value(value); // Clone
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
393 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
394 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
395
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
396
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
397 void DicomModification::ClearReplacements()
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
398 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
399 for (Replacements::iterator it = replacements_.begin();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
400 it != replacements_.end(); ++it)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
401 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
402 assert(it->second != NULL);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
403 delete it->second;
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
404 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
405
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
406 replacements_.clear();
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
407
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
408 for (SequenceReplacements::iterator it = sequenceReplacements_.begin();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
409 it != sequenceReplacements_.end(); ++it)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
410 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
411 assert(*it != NULL);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
412 assert((*it)->GetPath().GetPrefixLength() > 0);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
413 delete *it;
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
414 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
415
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
416 sequenceReplacements_.clear();
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
417 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
418
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
419
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
420 void DicomModification::MarkNotOrthancAnonymization()
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
421 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
422 Replacements::iterator it = replacements_.find(DICOM_TAG_DEIDENTIFICATION_METHOD);
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
423
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
424 if (it != replacements_.end())
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
425 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
426 assert(it->second != NULL);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
427
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
428 if (it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2008 ||
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
429 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2017c ||
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
430 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2021b)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
431 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
432 delete it->second;
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
433 replacements_.erase(it);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
434 }
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
435 }
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
436 }
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
437
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
438 void DicomModification::RegisterMappedDicomIdentifier(const std::string& original,
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
439 const std::string& mapped,
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
440 ResourceType level)
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
441 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
442 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, original));
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
443
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
444 if (previous == uidMap_.end())
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
445 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
446 uidMap_.insert(std::make_pair(std::make_pair(level, original), mapped));
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
447 }
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
448 }
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
449
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
450 std::string DicomModification::MapDicomIdentifier(const std::string& original,
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
451 ResourceType level)
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
452 {
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
453 const std::string stripped = Toolbox::StripSpaces(original);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
454
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
455 std::string mapped;
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
456
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
457 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, stripped));
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
458
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
459 if (previous == uidMap_.end())
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
460 {
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
461 if (identifierGenerator_ == NULL)
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
462 {
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
463 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level);
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
464 }
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
465 else
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
466 {
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
467 if (!identifierGenerator_->Apply(mapped, stripped, level, currentSource_))
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
468 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
469 throw OrthancException(ErrorCode_InternalError,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
470 "Unable to generate an anonymized ID");
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
471 }
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
472 }
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
473
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
474 uidMap_.insert(std::make_pair(std::make_pair(level, stripped), mapped));
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
475 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
476 else
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
477 {
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
478 mapped = previous->second;
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
479 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
480
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
481 return mapped;
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
482 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
483
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
484
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
485 void DicomModification::MapDicomTags(ParsedDicomFile& dicom,
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
486 ResourceType level)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
488 std::unique_ptr<DicomTag> tag;
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490 switch (level)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 {
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
492 case ResourceType_Study:
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 break;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
496 case ResourceType_Series:
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 break;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
500 case ResourceType_Instance:
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 tag.reset(new DicomTag(DICOM_TAG_SOP_INSTANCE_UID));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502 break;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
504 default:
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 throw OrthancException(ErrorCode_InternalError);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508 std::string original;
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
509 if (!const_cast<const ParsedDicomFile&>(dicom).GetTagValue(original, *tag))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511 original = "";
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
513
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
514 std::string mapped = MapDicomIdentifier(original, level);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
515
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
516 dicom.Replace(*tag, mapped,
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
517 false /* don't try and decode data URI scheme for UIDs */,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
518 DicomReplaceMode_InsertIfAbsent, privateCreator_);
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
519 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
521
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
522 DicomModification::DicomModification() :
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
523 removePrivateTags_(false),
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
524 level_(ResourceType_Instance),
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
525 keepStudyInstanceUid_(false),
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
526 keepSeriesInstanceUid_(false),
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
527 keepSopInstanceUid_(false),
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
528 updateReferencedRelationships_(true),
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
529 isAnonymization_(false),
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
530 //privateCreator_("PrivateCreator"),
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
531 identifierGenerator_(NULL)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
532 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
533 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
534
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
535 DicomModification::~DicomModification()
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
536 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
537 ClearReplacements();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
538 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
539
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
540 void DicomModification::Keep(const DicomTag& tag)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
541 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
542 removals_.erase(tag);
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
543 clearings_.erase(tag);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
544 uids_.erase(tag);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
545
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
546 CancelReplacement(tag);
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
547
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
548 if (tag == DICOM_TAG_STUDY_INSTANCE_UID)
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
549 {
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
550 keepStudyInstanceUid_ = true;
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
551 }
2321
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
552 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID)
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
553 {
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
554 keepSeriesInstanceUid_ = true;
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
555 }
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
556 else if (tag == DICOM_TAG_SOP_INSTANCE_UID)
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
557 {
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
558 keepSopInstanceUid_ = true;
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
559 }
2321
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
560 else if (tag.IsPrivate())
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
561 {
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
562 privateTagsToKeep_.insert(tag);
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
563 }
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
564
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
565 MarkNotOrthancAnonymization();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
566 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
567
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
568 void DicomModification::Remove(const DicomTag& tag)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
569 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
570 removals_.insert(tag);
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
571 clearings_.erase(tag);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
572 uids_.erase(tag);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
573 CancelReplacement(tag);
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
574 privateTagsToKeep_.erase(tag);
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
575
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
576 MarkNotOrthancAnonymization();
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
577 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
578
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
579 void DicomModification::Clear(const DicomTag& tag)
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
580 {
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
581 removals_.erase(tag);
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
582 clearings_.insert(tag);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
583 uids_.erase(tag);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
584 CancelReplacement(tag);
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
585 privateTagsToKeep_.erase(tag);
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
586
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
587 MarkNotOrthancAnonymization();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
588 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
589
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
590 bool DicomModification::IsRemoved(const DicomTag& tag) const
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
591 {
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
592 if (removals_.find(tag) != removals_.end())
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
593 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
594 return true;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
595 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
596 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
597 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
598 for (RemovedRanges::const_iterator it = removedRanges_.begin();
4690
13efc0967cea cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4688
diff changeset
599 it != removedRanges_.end(); ++it)
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
600 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
601 if (it->Contains(tag))
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
602 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
603 return true;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
604 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
605 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
606
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
607 return false;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
608 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
609 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
610
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
611 bool DicomModification::IsCleared(const DicomTag& tag) const
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
612 {
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
613 return clearings_.find(tag) != clearings_.end();
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
614 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
615
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
616 void DicomModification::Replace(const DicomTag& tag,
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
617 const Json::Value& value,
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
618 bool safeForAnonymization)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
619 {
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
620 clearings_.erase(tag);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
621 removals_.erase(tag);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
622 uids_.erase(tag);
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
623 privateTagsToKeep_.erase(tag);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
624 ReplaceInternal(tag, value);
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
625
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
626 if (!safeForAnonymization)
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
627 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
628 MarkNotOrthancAnonymization();
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
629 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
630 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
631
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
632
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
633 bool DicomModification::IsReplaced(const DicomTag& tag) const
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
634 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
635 return replacements_.find(tag) != replacements_.end();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
636 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
637
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
638 const Json::Value& DicomModification::GetReplacement(const DicomTag& tag) const
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
639 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
640 Replacements::const_iterator it = replacements_.find(tag);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
641
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
642 if (it == replacements_.end())
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
643 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
644 throw OrthancException(ErrorCode_InexistentItem);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
645 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
646 else
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
647 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
648 assert(it->second != NULL);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
649 return *it->second;
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
650 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
651 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
652
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
653
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
654 std::string DicomModification::GetReplacementAsString(const DicomTag& tag) const
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
655 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
656 const Json::Value& json = GetReplacement(tag);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
657
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
658 if (json.type() != Json::stringValue)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
659 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
660 throw OrthancException(ErrorCode_BadParameterType);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
661 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
662 else
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
663 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
664 return json.asString();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
665 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
666 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
667
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
668
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
669 void DicomModification::SetRemovePrivateTags(bool removed)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
670 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
671 removePrivateTags_ = removed;
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
672
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
673 if (!removed)
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
674 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
675 MarkNotOrthancAnonymization();
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
676 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
677 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
678
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
679 bool DicomModification::ArePrivateTagsRemoved() const
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
680 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
681 return removePrivateTags_;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
682 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
683
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
684 void DicomModification::SetLevel(ResourceType level)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
685 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
686 uidMap_.clear();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
687 level_ = level;
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
688
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
689 if (level != ResourceType_Patient)
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
690 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
691 MarkNotOrthancAnonymization();
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
692 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
693 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
694
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
695 ResourceType DicomModification::GetLevel() const
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
696 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
697 return level_;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
698 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
699
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
700
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
701 static void SetupUidsFromOrthancInternal(std::set<DicomTag>& uids,
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
702 std::set<DicomTag>& removals,
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
703 const DicomTag& tag)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
704 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
705 uids.insert(tag);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
706 removals.erase(tag); // Necessary if unserializing a job from 1.9.3
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
707 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
708
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
709
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
710 void DicomModification::SetupUidsFromOrthanc_1_9_3()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
711 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
712 /**
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
713 * Values below come from the hardcoded UID of Orthanc 1.9.3
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
714 * in DicomModification::RelationshipsVisitor::VisitString() and
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
715 * DicomModification::RelationshipsVisitor::RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
716 * https://hg.orthanc-server.com/orthanc/file/Orthanc-1.9.3/OrthancFramework/Sources/DicomParsing/DicomModification.cpp#l117
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
717 **/
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
718 uids_.clear();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
719
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
720 // (*) "PatientID" and "PatientName" are handled as UIDs since Orthanc 1.9.4
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
721 uids_.insert(DICOM_TAG_PATIENT_ID);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
722 uids_.insert(DICOM_TAG_PATIENT_NAME);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
723
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
724 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0008, 0x0014)); // Instance Creator UID <= from SetupAnonymization2008()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
725 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID <= from VisitString() + RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
726 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0020, 0x0052)); // Frame of Reference UID <= from VisitString() + RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
727 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID <= from SetupAnonymization2008()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
728 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0040, 0xa124)); // UID <= from SetupAnonymization2008()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
729 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0088, 0x0140)); // Storage Media File-set UID <= from SetupAnonymization2008()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
730 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID <= from VisitString() + RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
731 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID <= from VisitString() + RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
732 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
733
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
734
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
735 void DicomModification::SetupAnonymization2008()
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
736 {
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
737 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
738 // https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
739
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
740 SetupUidsFromOrthanc_1_9_3();
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
741
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
742 //uids_.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID => set in SetupUidsFromOrthanc_1_9_3()
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
743 //removals_.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set in Apply()
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
744 removals_.insert(DicomTag(0x0008, 0x0050)); // Accession Number
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
745 removals_.insert(DicomTag(0x0008, 0x0080)); // Institution Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
746 removals_.insert(DicomTag(0x0008, 0x0081)); // Institution Address
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
747 removals_.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
748 removals_.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
749 removals_.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
750 removals_.insert(DicomTag(0x0008, 0x1010)); // Station Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
751 removals_.insert(DicomTag(0x0008, 0x1030)); // Study Description
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
752 removals_.insert(DicomTag(0x0008, 0x103e)); // Series Description
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
753 removals_.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
754 removals_.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
755 removals_.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
756 removals_.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
757 removals_.insert(DicomTag(0x0008, 0x1070)); // Operators' Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
758 removals_.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
759 //uids_.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID => set in SetupUidsFromOrthanc_1_9_3()
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
760 removals_.insert(DicomTag(0x0008, 0x2111)); // Derivation Description
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
761 //removals_.insert(DicomTag(0x0010, 0x0010)); // Patient's Name => cf. below (*)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
762 //removals_.insert(DicomTag(0x0010, 0x0020)); // Patient ID => cf. below (*)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
763 removals_.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
764 removals_.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
765 removals_.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
766 removals_.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
767 removals_.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
768 removals_.insert(DicomTag(0x0010, 0x1010)); // Patient's Age
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
769 removals_.insert(DicomTag(0x0010, 0x1020)); // Patient's Size
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
770 removals_.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
771 removals_.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
772 removals_.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
773 removals_.insert(DicomTag(0x0010, 0x2180)); // Occupation
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
774 removals_.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
775 removals_.insert(DicomTag(0x0010, 0x4000)); // Patient Comments
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
776 removals_.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
777 removals_.insert(DicomTag(0x0018, 0x1030)); // Protocol Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
778 //removals_.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => set in Apply()
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
779 //removals_.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => set in Apply()
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
780 removals_.insert(DicomTag(0x0020, 0x0010)); // Study ID
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
781 //uids_.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
782 //uids_.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3()
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
783 removals_.insert(DicomTag(0x0020, 0x4000)); // Image Comments
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
784 removals_.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
785 //uids_.insert(DicomTag(0x0040, 0xa124)); // UID => set in SetupUidsFromOrthanc_1_9_3()
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
786 removals_.insert(DicomTag(0x0040, 0xa730)); // Content Sequence
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
787 //uids_.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID => set in SetupUidsFromOrthanc_1_9_3()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
788 //uids_.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
789 //uids_.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3()
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
790
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
791 // Some more removals (from the experience of DICOM files at the CHU of Liege)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
792 removals_.insert(DicomTag(0x0010, 0x1040)); // Patient's Address
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
793 removals_.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
794 removals_.insert(DicomTag(0x0010, 0x2154)); // PatientTelephoneNumbers
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
795 removals_.insert(DicomTag(0x0010, 0x2000)); // Medical Alerts
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
796
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
797 // Set the DeidentificationMethod tag
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
798 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2008);
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
799 }
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
800
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
801
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
802 void DicomModification::SetupAnonymization2017c()
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
803 {
2313
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
804 /**
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
805 * This is Table E.1-1 from PS 3.15-2017c (DICOM Part 15: Security
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
806 * and System Management Profiles), "basic profile" column. It was
4675
7e4d1f2b3a8f GenerateAnonymizationProfile.py can read from URL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
807 * generated automatically by calling:
7e4d1f2b3a8f GenerateAnonymizationProfile.py can read from URL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
808 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py
7e4d1f2b3a8f GenerateAnonymizationProfile.py can read from URL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
809 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2017c/part15.xml"
2313
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
810 **/
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
811
4676
caf963ee3de9 DicomModification_Anonymization2017c.impl.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4675
diff changeset
812 #include "DicomModification_Anonymization2017c.impl.h"
2313
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
813
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
814 // Set the DeidentificationMethod tag
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
815 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2017c);
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
816 }
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
817
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
818
4677
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
819 void DicomModification::SetupAnonymization2021b()
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
820 {
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
821 /**
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
822 * This is Table E.1-1 from PS 3.15-2021b (DICOM Part 15: Security
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
823 * and System Management Profiles), "basic profile" column. It was
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
824 * generated automatically by calling:
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
825 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
826 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2021b/part15.xml"
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
827 *
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
828 * http://dicom.nema.org/medical/dicom/2021b/output/chtml/part15/chapter_E.html#table_E.1-1a
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
829 * http://dicom.nema.org/medical/dicom/2021b/output/chtml/part15/chapter_E.html#table_E.1-1
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
830 **/
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
831
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
832 #include "DicomModification_Anonymization2021b.impl.h"
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
833
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
834 // Set the DeidentificationMethod tag
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
835 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2021b);
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
836 }
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
837
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
838
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
839 void DicomModification::SetupAnonymization(DicomVersion version)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
840 {
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
841 isAnonymization_ = true;
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
842
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
843 removals_.clear();
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
844 clearings_.clear();
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
845 removedRanges_.clear();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
846 uids_.clear();
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
847 ClearReplacements();
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
848 removePrivateTags_ = true;
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
849 level_ = ResourceType_Patient;
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
850 uidMap_.clear();
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
851 privateTagsToKeep_.clear();
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
852 keepSequences_.clear();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
853 removeSequences_.clear();
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
854
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
855 switch (version)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
856 {
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
857 case DicomVersion_2008:
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
858 SetupAnonymization2008();
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
859 break;
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
860
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
861 case DicomVersion_2017c:
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
862 SetupAnonymization2017c();
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
863 break;
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
864
4677
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
865 case DicomVersion_2021b:
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
866 SetupAnonymization2021b();
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
867 break;
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
868
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
869 default:
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
870 throw OrthancException(ErrorCode_ParameterOutOfRange);
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
871 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
872
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
873 // Set the PatientIdentityRemoved tag
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
874 ReplaceInternal(DicomTag(0x0012, 0x0062), "YES");
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
875
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
876 // (*) Choose a random patient name and ID
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
877 uids_.insert(DICOM_TAG_PATIENT_ID);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
878 uids_.insert(DICOM_TAG_PATIENT_NAME);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
879
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
880 // Sanity check
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
881 for (SetOfTags::const_iterator it = uids_.begin(); it != uids_.end(); ++it)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
882 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
883 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(*it);
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
884 if (*it == DICOM_TAG_PATIENT_ID)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
885 {
4696
dd6274412ff4 new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
886 if (vr != ValueRepresentation_LongString &&
dd6274412ff4 new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
887 vr != ValueRepresentation_NotSupported /* if no dictionary loaded */)
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
888 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
889 throw OrthancException(ErrorCode_InternalError);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
890 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
891 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
892 else if (*it == DICOM_TAG_PATIENT_NAME)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
893 {
4696
dd6274412ff4 new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
894 if (vr != ValueRepresentation_PersonName &&
dd6274412ff4 new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
895 vr != ValueRepresentation_NotSupported /* if no dictionary loaded */)
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
896 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
897 throw OrthancException(ErrorCode_InternalError);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
898 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
899 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
900 else if (vr != ValueRepresentation_UniqueIdentifier &&
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
901 vr != ValueRepresentation_NotSupported /* for older versions of DCMTK */)
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
902 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
903 throw OrthancException(ErrorCode_InternalError);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
904 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
905 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
906 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
907
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
908 void DicomModification::Apply(ParsedDicomFile& toModify)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
909 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
910 // Check the request
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
911 assert(ResourceType_Patient + 1 == ResourceType_Study &&
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
912 ResourceType_Study + 1 == ResourceType_Series &&
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
913 ResourceType_Series + 1 == ResourceType_Instance);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
914
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
915 if (IsRemoved(DICOM_TAG_PATIENT_ID) ||
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
916 IsRemoved(DICOM_TAG_STUDY_INSTANCE_UID) ||
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
917 IsRemoved(DICOM_TAG_SERIES_INSTANCE_UID) ||
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
918 IsRemoved(DICOM_TAG_SOP_INSTANCE_UID))
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
919 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
920 throw OrthancException(ErrorCode_BadRequest);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
921 }
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
922
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
923
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
924
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
925 // (0) Create a summary of the source file, if a custom generator
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
926 // is provided
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
927 if (identifierGenerator_ != NULL)
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
928 {
4139
a4f28efdfccf "maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
929 toModify.ExtractDicomSummary(currentSource_, ORTHANC_MAXIMUM_TAG_LENGTH);
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
930 }
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
931
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
932 // (1) Make sure the relationships are updated with the ids that we force too
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
933 // i.e: an RT-STRUCT is referencing its own StudyInstanceUID
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
934 if (isAnonymization_ && updateReferencedRelationships_)
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
935 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
936 if (IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
937 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
938 std::string original;
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
939 std::string replacement = GetReplacementAsString(DICOM_TAG_STUDY_INSTANCE_UID);
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
940 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_STUDY_INSTANCE_UID);
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
941 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Study);
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
942 }
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
943
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
944 if (IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
945 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
946 std::string original;
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
947 std::string replacement = GetReplacementAsString(DICOM_TAG_SERIES_INSTANCE_UID);
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
948 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SERIES_INSTANCE_UID);
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
949 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Series);
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
950 }
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
951
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
952 if (IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
953 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
954 std::string original;
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
955 std::string replacement = GetReplacementAsString(DICOM_TAG_SOP_INSTANCE_UID);
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
956 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SOP_INSTANCE_UID);
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
957 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Instance);
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
958 }
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
959 }
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
960
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
961
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
962 // (2) Remove the private tags, if need be
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
963 if (removePrivateTags_)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
964 {
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
965 toModify.RemovePrivateTags(privateTagsToKeep_);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
966 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
967
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
968 // (3) Clear the tags specified by the user
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
969 for (SetOfTags::const_iterator it = clearings_.begin();
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
970 it != clearings_.end(); ++it)
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
971 {
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
972 toModify.Clear(*it, true /* only clear if the tag exists in the original file */);
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
973 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
974
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
975 // (4) Remove the tags specified by the user
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
976 for (SetOfTags::const_iterator it = removals_.begin();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
977 it != removals_.end(); ++it)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
978 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
979 toModify.Remove(*it);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
980 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
981
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
982 // (5) Replace the tags
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
983 for (Replacements::const_iterator it = replacements_.begin();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
984 it != replacements_.end(); ++it)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
985 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
986 assert(it->second != NULL);
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
987 toModify.Replace(it->first, *it->second, true /* decode data URI scheme */,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
988 DicomReplaceMode_InsertIfAbsent, privateCreator_);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
989 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
990
4691
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
991 // (6) Update the DICOM identifiers
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
992 if (level_ <= ResourceType_Study &&
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
993 !IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
994 {
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
995 if (keepStudyInstanceUid_)
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
996 {
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
997 LOG(WARNING) << "Modifying a study while keeping its original StudyInstanceUID: This should be avoided!";
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
998 }
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
999 else
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1000 {
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1001 MapDicomTags(toModify, ResourceType_Study);
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1002 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1003 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1004
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1005 if (level_ <= ResourceType_Series &&
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1006 !IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1007 {
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1008 if (keepSeriesInstanceUid_)
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1009 {
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1010 LOG(WARNING) << "Modifying a series while keeping its original SeriesInstanceUID: This should be avoided!";
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1011 }
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1012 else
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1013 {
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1014 MapDicomTags(toModify, ResourceType_Series);
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1015 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1016 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1017
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1018 if (level_ <= ResourceType_Instance && // Always true
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1019 !IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1020 {
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1021 if (keepSopInstanceUid_)
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1022 {
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1023 LOG(WARNING) << "Modifying an instance while keeping its original SOPInstanceUID: This should be avoided!";
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1024 }
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1025 else
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1026 {
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1027 MapDicomTags(toModify, ResourceType_Instance);
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1028 }
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1029 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1030
4691
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1031 // (7) Update the "referenced" relationships in the case of an anonymization
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
1032 if (isAnonymization_)
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1033 {
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1034 RelationshipsVisitor visitor(*this);
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1035
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1036 if (updateReferencedRelationships_)
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1037 {
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
1038 const_cast<const ParsedDicomFile&>(toModify).Apply(visitor);
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1039 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1040 else
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1041 {
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1042 visitor.RemoveRelationships(toModify);
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1043 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1044 }
4691
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1045
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1046 // (8) New in Orthanc 1.9.4: Apply modifications to subsequences
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1047 for (ListOfPaths::const_iterator it = removeSequences_.begin();
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1048 it != removeSequences_.end(); ++it)
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1049 {
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1050 assert(it->GetPrefixLength() > 0);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1051 toModify.RemovePath(*it);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1052 }
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1053
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1054 for (SequenceReplacements::const_iterator it = sequenceReplacements_.begin();
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1055 it != sequenceReplacements_.end(); ++it)
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1056 {
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1057 assert(*it != NULL);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1058 assert((*it)->GetPath().GetPrefixLength() > 0);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1059 toModify.ReplacePath((*it)->GetPath(), (*it)->GetValue(), true /* decode data URI scheme */,
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1060 DicomReplaceMode_InsertIfAbsent, privateCreator_);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1061 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1062 }
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1063
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1064 static bool IsDatabaseKey(const DicomTag& tag)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1065 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1066 return (tag == DICOM_TAG_PATIENT_ID ||
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1067 tag == DICOM_TAG_STUDY_INSTANCE_UID ||
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1068 tag == DICOM_TAG_SERIES_INSTANCE_UID ||
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1069 tag == DICOM_TAG_SOP_INSTANCE_UID);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1070 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1071
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1072
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1073 static void ParseListOfTags(DicomModification& target,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1074 const Json::Value& query,
4737
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4734
diff changeset
1075 TagOperation operation,
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1076 bool force)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1077 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1078 if (!query.isArray())
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1079 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1080 throw OrthancException(ErrorCode_BadRequest);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1081 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1082
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1083 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1084 {
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1085 if (query[i].type() != Json::stringValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1086 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1087 throw OrthancException(ErrorCode_BadRequest);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1088 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1089
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1090 std::string name = query[i].asString();
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1091
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1092 const DicomPath path(DicomPath::Parse(name));
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1093
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1094 if (path.GetPrefixLength() == 0 &&
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1095 !force &&
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1096 IsDatabaseKey(path.GetFinalTag()))
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1097 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1098 throw OrthancException(ErrorCode_BadRequest,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1099 "Marking tag \"" + name + "\" as to be " +
4737
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4734
diff changeset
1100 (operation == TagOperation_Keep ? "kept" : "removed") +
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1101 " requires the \"Force\" option to be set to true");
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1102 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1103
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1104 switch (operation)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1105 {
4737
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4734
diff changeset
1106 case TagOperation_Keep:
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1107 target.Keep(path);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1108 LOG(TRACE) << "Keep: " << name << " = " << path.Format();
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1109 break;
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1110
4737
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4734
diff changeset
1111 case TagOperation_Remove:
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1112 target.Remove(path);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1113 LOG(TRACE) << "Remove: " << name << " = " << path.Format();
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1114 break;
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1115
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1116 default:
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1117 throw OrthancException(ErrorCode_InternalError);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1118 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1119 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1120 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1121
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1122
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1123 static void ParseReplacements(DicomModification& target,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1124 const Json::Value& replacements,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1125 bool force)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1126 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1127 if (!replacements.isObject())
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1128 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1129 throw OrthancException(ErrorCode_BadRequest);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1130 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1131
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1132 Json::Value::Members members = replacements.getMemberNames();
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1133 for (size_t i = 0; i < members.size(); i++)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1134 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1135 const std::string& name = members[i];
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1136 const Json::Value& value = replacements[name];
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1137
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1138 const DicomPath path(DicomPath::Parse(name));
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1139
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1140 if (path.GetPrefixLength() == 0 &&
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1141 !force &&
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1142 IsDatabaseKey(path.GetFinalTag()))
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1143 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1144 throw OrthancException(ErrorCode_BadRequest,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1145 "Marking tag \"" + name + "\" as to be replaced " +
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1146 "requires the \"Force\" option to be set to true");
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1147 }
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1148
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1149 target.Replace(path, value, false /* not safe for anonymization */);
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1150
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1151 LOG(TRACE) << "Replace: " << name << " = " << path.Format()
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1152 << " by: " << value.toStyledString();
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1153 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1154 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1155
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1156
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1157 static bool GetBooleanValue(const std::string& member,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1158 const Json::Value& json,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1159 bool defaultValue)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1160 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1161 if (!json.isMember(member))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1162 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1163 return defaultValue;
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1164 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1165 else if (json[member].type() == Json::booleanValue)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1166 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1167 return json[member].asBool();
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1168 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1169 else
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1170 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1171 throw OrthancException(ErrorCode_BadFileFormat,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1172 "Member \"" + member + "\" should be a Boolean value");
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1173 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1174 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1175
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1176
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1177 void DicomModification::ParseModifyRequest(const Json::Value& request)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1178 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1179 if (!request.isObject())
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1180 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1181 throw OrthancException(ErrorCode_BadFileFormat);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1182 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1183
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1184 bool force = GetBooleanValue("Force", request, false);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1185
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1186 if (GetBooleanValue("RemovePrivateTags", request, false))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1187 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1188 SetRemovePrivateTags(true);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1189 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1190
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1191 if (request.isMember("Remove"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1192 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1193 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1194 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1195
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1196 if (request.isMember("Replace"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1197 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1198 ParseReplacements(*this, request["Replace"], force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1199 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1200
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1201 // The "Keep" operation only makes sense for the tags
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1202 // StudyInstanceUID, SeriesInstanceUID and SOPInstanceUID. Avoid
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1203 // this feature as much as possible, as this breaks the DICOM
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1204 // model of the real world, except if you know exactly what
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1205 // you're doing!
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1206 if (request.isMember("Keep"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1207 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1208 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1209 }
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1210
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1211 // New in Orthanc 1.6.0
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1212 if (request.isMember("PrivateCreator"))
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1213 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1214 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator");
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1215 }
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1216 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1217
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1218
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
1219 void DicomModification::ParseAnonymizationRequest(bool& patientNameOverridden,
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1220 const Json::Value& request)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1221 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1222 if (!request.isObject())
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1223 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1224 throw OrthancException(ErrorCode_BadFileFormat);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1225 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1226
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1227 bool force = GetBooleanValue("Force", request, false);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1228
4677
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
1229 // DicomVersion version = DicomVersion_2008; // For Orthanc <= 1.2.0
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
1230 // DicomVersion version = DicomVersion_2017c; // For Orthanc between 1.3.0 and 1.9.3
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
1231 DicomVersion version = DicomVersion_2021b; // For Orthanc >= 1.9.4
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1232 if (request.isMember("DicomVersion"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1233 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1234 if (request["DicomVersion"].type() != Json::stringValue)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1235 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1236 throw OrthancException(ErrorCode_BadFileFormat);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1237 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1238 else
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1239 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1240 version = StringToDicomVersion(request["DicomVersion"].asString());
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1241 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1242 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1243
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1244 SetupAnonymization(version);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1245
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1246 if (GetBooleanValue("KeepPrivateTags", request, false))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1247 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1248 SetRemovePrivateTags(false);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1249 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1250
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1251 if (request.isMember("Remove"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1252 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1253 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1254 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1255
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1256 if (request.isMember("Replace"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1257 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1258 ParseReplacements(*this, request["Replace"], force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1259 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1260
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1261 if (request.isMember("Keep"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1262 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1263 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1264 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1265
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
1266 patientNameOverridden = (uids_.find(DICOM_TAG_PATIENT_NAME) == uids_.end());
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
1267
3709
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1268 // New in Orthanc 1.6.0
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1269 if (request.isMember("PrivateCreator"))
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1270 {
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1271 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator");
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1272 }
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1273 }
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1274
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1275 void DicomModification::SetDicomIdentifierGenerator(DicomModification::IDicomIdentifierGenerator &generator)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1276 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1277 identifierGenerator_ = &generator;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1278 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1279
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1280
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1281
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1282
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1283 static const char* REMOVE_PRIVATE_TAGS = "RemovePrivateTags";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1284 static const char* LEVEL = "Level";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1285 static const char* KEEP_STUDY_INSTANCE_UID = "KeepStudyInstanceUID";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1286 static const char* KEEP_SERIES_INSTANCE_UID = "KeepSeriesInstanceUID";
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1287 static const char* KEEP_SOP_INSTANCE_UID = "KeepSOPInstanceUID";
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1288 static const char* UPDATE_REFERENCED_RELATIONSHIPS = "UpdateReferencedRelationships";
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
1289 static const char* IS_ANONYMIZATION = "IsAnonymization";
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1290 static const char* REMOVALS = "Removals";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1291 static const char* CLEARINGS = "Clearings";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1292 static const char* PRIVATE_TAGS_TO_KEEP = "PrivateTagsToKeep";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1293 static const char* REPLACEMENTS = "Replacements";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1294 static const char* MAP_PATIENTS = "MapPatients";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1295 static const char* MAP_STUDIES = "MapStudies";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1296 static const char* MAP_SERIES = "MapSeries";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1297 static const char* MAP_INSTANCES = "MapInstances";
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1298 static const char* PRIVATE_CREATOR = "PrivateCreator"; // New in Orthanc 1.6.0
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1299 static const char* UIDS = "Uids"; // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1300 static const char* REMOVED_RANGES = "RemovedRanges"; // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1301 static const char* KEEP_SEQUENCES = "KeepSequences"; // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1302 static const char* REMOVE_SEQUENCES = "RemoveSequences"; // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1303 static const char* SEQUENCE_REPLACEMENTS = "SequenceReplacements"; // New in Orthanc 1.9.4
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1304
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1305 void DicomModification::Serialize(Json::Value& value) const
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1306 {
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1307 if (identifierGenerator_ != NULL)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1308 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1309 throw OrthancException(ErrorCode_InternalError,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1310 "Cannot serialize a DicomModification with a custom identifier generator");
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1311 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1312
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1313 value = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1314 value[REMOVE_PRIVATE_TAGS] = removePrivateTags_;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1315 value[LEVEL] = EnumerationToString(level_);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1316 value[KEEP_STUDY_INSTANCE_UID] = keepStudyInstanceUid_;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1317 value[KEEP_SERIES_INSTANCE_UID] = keepSeriesInstanceUid_;
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1318 value[KEEP_SOP_INSTANCE_UID] = keepSopInstanceUid_;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1319 value[UPDATE_REFERENCED_RELATIONSHIPS] = updateReferencedRelationships_;
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
1320 value[IS_ANONYMIZATION] = isAnonymization_;
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1321 value[PRIVATE_CREATOR] = privateCreator_;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1322
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1323 SerializationToolbox::WriteSetOfTags(value, removals_, REMOVALS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1324 SerializationToolbox::WriteSetOfTags(value, clearings_, CLEARINGS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1325 SerializationToolbox::WriteSetOfTags(value, privateTagsToKeep_, PRIVATE_TAGS_TO_KEEP);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1326
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1327 Json::Value& tmp = value[REPLACEMENTS];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1328
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1329 tmp = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1330
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1331 for (Replacements::const_iterator it = replacements_.begin();
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1332 it != replacements_.end(); ++it)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1333 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1334 assert(it->second != NULL);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1335 tmp[it->first.Format()] = *it->second;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1336 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1337
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1338 Json::Value& mapPatients = value[MAP_PATIENTS];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1339 Json::Value& mapStudies = value[MAP_STUDIES];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1340 Json::Value& mapSeries = value[MAP_SERIES];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1341 Json::Value& mapInstances = value[MAP_INSTANCES];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1342
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1343 mapPatients = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1344 mapStudies = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1345 mapSeries = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1346 mapInstances = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1347
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1348 for (UidMap::const_iterator it = uidMap_.begin(); it != uidMap_.end(); ++it)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1349 {
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1350 Json::Value* tmp2 = NULL;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1351
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1352 switch (it->first.first)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1353 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1354 case ResourceType_Patient:
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1355 tmp2 = &mapPatients;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1356 break;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1357
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1358 case ResourceType_Study:
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1359 tmp2 = &mapStudies;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1360 break;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1361
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1362 case ResourceType_Series:
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1363 tmp2 = &mapSeries;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1364 break;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1365
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1366 case ResourceType_Instance:
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1367 tmp2 = &mapInstances;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1368 break;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1369
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1370 default:
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1371 throw OrthancException(ErrorCode_InternalError);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1372 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1373
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1374 assert(tmp2 != NULL);
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1375 (*tmp2) [it->first.second] = it->second;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1376 }
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1377
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1378 // New in Orthanc 1.9.4
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1379 SerializationToolbox::WriteSetOfTags(value, uids_, UIDS);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1380
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1381 // New in Orthanc 1.9.4
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1382 Json::Value ranges = Json::arrayValue;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1383
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1384 for (RemovedRanges::const_iterator it = removedRanges_.begin(); it != removedRanges_.end(); ++it)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1385 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1386 Json::Value item = Json::arrayValue;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1387 item.append(it->GetGroupFrom());
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1388 item.append(it->GetGroupTo());
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1389 item.append(it->GetElementFrom());
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1390 item.append(it->GetElementTo());
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1391 ranges.append(item);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1392 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1393
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1394 value[REMOVED_RANGES] = ranges;
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1395
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1396 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1397 Json::Value lst = Json::arrayValue;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1398 for (ListOfPaths::const_iterator it = keepSequences_.begin(); it != keepSequences_.end(); ++it)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1399 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1400 lst.append(it->Format());
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1401 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1402
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1403 value[KEEP_SEQUENCES] = lst;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1404
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1405 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1406 lst = Json::arrayValue;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1407 for (ListOfPaths::const_iterator it = removeSequences_.begin(); it != removeSequences_.end(); ++it)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1408 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1409 assert(it->GetPrefixLength() > 0);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1410 lst.append(it->Format());
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1411 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1412
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1413 value[REMOVE_SEQUENCES] = lst;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1414
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1415 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1416 lst = Json::objectValue;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1417 for (SequenceReplacements::const_iterator it = sequenceReplacements_.begin(); it != sequenceReplacements_.end(); ++it)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1418 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1419 assert(*it != NULL);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1420 assert((*it)->GetPath().GetPrefixLength() > 0);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1421 lst[(*it)->GetPath().Format()] = (*it)->GetValue();
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1422 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1423
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1424 value[SEQUENCE_REPLACEMENTS] = lst;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1425 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1426
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1427 void DicomModification::UnserializeUidMap(ResourceType level,
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1428 const Json::Value& serialized,
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1429 const char* field)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1430 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1431 if (!serialized.isMember(field) ||
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1432 serialized[field].type() != Json::objectValue)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1433 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1434 throw OrthancException(ErrorCode_BadFileFormat);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1435 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1436
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1437 Json::Value::Members names = serialized[field].getMemberNames();
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1438
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1439 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1440 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1441 const Json::Value& value = serialized[field][*it];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1442
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1443 if (value.type() != Json::stringValue)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1444 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1445 throw OrthancException(ErrorCode_BadFileFormat);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1446 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1447 else
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1448 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1449 uidMap_[std::make_pair(level, *it)] = value.asString();
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1450 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1451 }
2655
c196d76cb8fa serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
1452 }
c196d76cb8fa serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
1453
c196d76cb8fa serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
1454
2666
2540ac79ab6c SequenceOfOperationsJob serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1455 DicomModification::DicomModification(const Json::Value& serialized) :
2540ac79ab6c SequenceOfOperationsJob serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1456 identifierGenerator_(NULL)
2655
c196d76cb8fa serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
1457 {
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1458 removePrivateTags_ = SerializationToolbox::ReadBoolean(serialized, REMOVE_PRIVATE_TAGS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1459 level_ = StringToResourceType(SerializationToolbox::ReadString(serialized, LEVEL).c_str());
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1460 keepStudyInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_STUDY_INSTANCE_UID);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1461 keepSeriesInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SERIES_INSTANCE_UID);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1462 updateReferencedRelationships_ = SerializationToolbox::ReadBoolean
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1463 (serialized, UPDATE_REFERENCED_RELATIONSHIPS);
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
1464 isAnonymization_ = SerializationToolbox::ReadBoolean(serialized, IS_ANONYMIZATION);
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1465
4688
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1466 if (serialized.isMember(KEEP_SOP_INSTANCE_UID))
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1467 {
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1468 keepSopInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SOP_INSTANCE_UID);
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1469 }
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1470 else
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1471 {
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1472 /**
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1473 * Compatibility with jobs serialized using Orthanc between
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1474 * 1.5.0 and 1.6.1. This compatibility was broken between 1.7.0
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1475 * and 1.9.3: Indeed, an exception was thrown in "ReadBoolean()"
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1476 * if "KEEP_SOP_INSTANCE_UID" was absent, because of changeset:
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1477 * https://hg.orthanc-server.com/orthanc/rev/3860
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1478 **/
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1479 keepSopInstanceUid_ = false;
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1480 }
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1481
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1482 if (serialized.isMember(PRIVATE_CREATOR))
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1483 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1484 privateCreator_ = SerializationToolbox::ReadString(serialized, PRIVATE_CREATOR);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1485 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1486
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1487 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1488 SerializationToolbox::ReadSetOfTags(clearings_, serialized, CLEARINGS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1489 SerializationToolbox::ReadSetOfTags(privateTagsToKeep_, serialized, PRIVATE_TAGS_TO_KEEP);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1490
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1491 if (!serialized.isMember(REPLACEMENTS) ||
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1492 serialized[REPLACEMENTS].type() != Json::objectValue)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1493 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1494 throw OrthancException(ErrorCode_BadFileFormat);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1495 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1496
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1497 Json::Value::Members names = serialized[REPLACEMENTS].getMemberNames();
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1498
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1499 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1500 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1501 DicomTag tag(0, 0);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1502 if (!DicomTag::ParseHexadecimal(tag, it->c_str()))
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1503 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1504 throw OrthancException(ErrorCode_BadFileFormat);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1505 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1506 else
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1507 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1508 const Json::Value& value = serialized[REPLACEMENTS][*it];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1509 replacements_.insert(std::make_pair(tag, new Json::Value(value)));
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1510 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1511 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1512
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1513 UnserializeUidMap(ResourceType_Patient, serialized, MAP_PATIENTS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1514 UnserializeUidMap(ResourceType_Study, serialized, MAP_STUDIES);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1515 UnserializeUidMap(ResourceType_Series, serialized, MAP_SERIES);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1516 UnserializeUidMap(ResourceType_Instance, serialized, MAP_INSTANCES);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1517
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1518 // New in Orthanc 1.9.4
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1519 if (serialized.isMember(UIDS)) // Backward compatibility with Orthanc <= 1.9.3
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1520 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1521 SerializationToolbox::ReadSetOfTags(uids_, serialized, UIDS);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1522 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1523 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1524 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1525 SetupUidsFromOrthanc_1_9_3();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1526 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1527
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1528 // New in Orthanc 1.9.4
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1529 removedRanges_.clear();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1530 if (serialized.isMember(REMOVED_RANGES)) // Backward compatibility with Orthanc <= 1.9.3
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1531 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1532 const Json::Value& ranges = serialized[REMOVED_RANGES];
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1533
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1534 if (ranges.type() != Json::arrayValue)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1535 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1536 throw OrthancException(ErrorCode_BadFileFormat);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1537 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1538 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1539 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1540 for (Json::Value::ArrayIndex i = 0; i < ranges.size(); i++)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1541 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1542 if (ranges[i].type() != Json::arrayValue ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1543 ranges[i].size() != 4 ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1544 !ranges[i][0].isUInt() ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1545 !ranges[i][1].isUInt() ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1546 !ranges[i][2].isUInt() ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1547 !ranges[i][3].isUInt())
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1548 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1549 throw OrthancException(ErrorCode_BadFileFormat);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1550 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1551 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1552 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1553 Json::LargestUInt groupFrom = ranges[i][0].asUInt();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1554 Json::LargestUInt groupTo = ranges[i][1].asUInt();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1555 Json::LargestUInt elementFrom = ranges[i][2].asUInt();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1556 Json::LargestUInt elementTo = ranges[i][3].asUInt();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1557
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1558 if (groupFrom > groupTo ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1559 elementFrom > elementTo ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1560 groupTo > 0xffffu ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1561 elementTo > 0xffffu)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1562 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1563 throw OrthancException(ErrorCode_BadFileFormat);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1564 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1565 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1566 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1567 removedRanges_.push_back(DicomTagRange(groupFrom, groupTo, elementFrom, elementTo));
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1568 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1569 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1570 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1571 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1572 }
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1573
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1574 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1575 if (serialized.isMember(KEEP_SEQUENCES))
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1576 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1577 const Json::Value& keep = serialized[KEEP_SEQUENCES];
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1578
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1579 if (keep.type() != Json::arrayValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1580 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1581 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1582 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1583 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1584 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1585 for (Json::Value::ArrayIndex i = 0; i < keep.size(); i++)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1586 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1587 if (keep[i].type() != Json::stringValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1588 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1589 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1590 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1591 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1592 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1593 keepSequences_.push_back(DicomPath::Parse(keep[i].asString()));
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1594 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1595 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1596 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1597 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1598
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1599 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1600 if (serialized.isMember(REMOVE_SEQUENCES))
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1601 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1602 const Json::Value& remove = serialized[REMOVE_SEQUENCES];
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1603
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1604 if (remove.type() != Json::arrayValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1605 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1606 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1607 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1608 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1609 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1610 for (Json::Value::ArrayIndex i = 0; i < remove.size(); i++)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1611 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1612 if (remove[i].type() != Json::stringValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1613 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1614 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1615 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1616 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1617 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1618 removeSequences_.push_back(DicomPath::Parse(remove[i].asString()));
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1619 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1620 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1621 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1622 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1623
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1624 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1625 if (serialized.isMember(SEQUENCE_REPLACEMENTS))
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1626 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1627 const Json::Value& replace = serialized[SEQUENCE_REPLACEMENTS];
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1628
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1629 if (replace.type() != Json::objectValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1630 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1631 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1632 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1633 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1634 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1635 Json::Value::Members members = replace.getMemberNames();
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1636 for (size_t i = 0; i < members.size(); i++)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1637 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1638 sequenceReplacements_.push_back(
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1639 new SequenceReplacement(DicomPath::Parse(members[i]), replace[members[i]]));
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1640 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1641 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1642 }
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1643 }
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1644
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1645
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1646 void DicomModification::SetPrivateCreator(const std::string &privateCreator)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1647 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1648 privateCreator_ = privateCreator;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1649 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1650
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1651 const std::string &DicomModification::GetPrivateCreator() const
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1652 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1653 return privateCreator_;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1654 }
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1655
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1656
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1657 void DicomModification::Keep(const DicomPath& path)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1658 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1659 if (path.GetPrefixLength() == 0)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1660 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1661 Keep(path.GetFinalTag());
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1662 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1663
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1664 keepSequences_.push_back(path);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1665 MarkNotOrthancAnonymization();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1666 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1667
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1668
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1669 void DicomModification::Remove(const DicomPath& path)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1670 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1671 if (path.GetPrefixLength() == 0)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1672 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1673 Remove(path.GetFinalTag());
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1674 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1675 else
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1676 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1677 removeSequences_.push_back(path);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1678 MarkNotOrthancAnonymization();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1679 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1680 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1681
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1682
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1683 void DicomModification::Replace(const DicomPath& path,
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1684 const Json::Value& value,
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1685 bool safeForAnonymization)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1686 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1687 if (path.GetPrefixLength() == 0)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1688 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1689 Replace(path.GetFinalTag(), value, safeForAnonymization);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1690 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1691 else
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1692 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1693 sequenceReplacements_.push_back(new SequenceReplacement(path, value));
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1694
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1695 if (!safeForAnonymization)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1696 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1697 MarkNotOrthancAnonymization();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1698 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1699 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1700 }
4789
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1701
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1702
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1703 bool DicomModification::IsAlteredTag(const DicomTag& tag) const
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1704 {
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1705 return (uids_.find(tag) != uids_.end() ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1706 IsCleared(tag) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1707 IsRemoved(tag) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1708 IsReplaced(tag) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1709 (tag.IsPrivate() &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1710 ArePrivateTagsRemoved() &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1711 privateTagsToKeep_.find(tag) == privateTagsToKeep_.end()) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1712 (isAnonymization_ && (
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1713 tag == DICOM_TAG_PATIENT_NAME ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1714 tag == DICOM_TAG_PATIENT_ID)) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1715 (tag == DICOM_TAG_STUDY_INSTANCE_UID &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1716 !keepStudyInstanceUid_) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1717 (tag == DICOM_TAG_SERIES_INSTANCE_UID &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1718 !keepSeriesInstanceUid_) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1719 (tag == DICOM_TAG_SOP_INSTANCE_UID &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1720 !keepSopInstanceUid_));
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1721 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1722 }