Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/ParsedDicomFile.h @ 4336:9b38aadd4a99
tagging pre-release of the Orthanc Framework for Stone Web viewer 1.0
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 02 Dec 2020 07:14:23 +0100 |
| parents | 3b70a2e6a06c |
| children | d9473bd5ed43 |
| rev | line source |
|---|---|
| 790 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 790 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
| 790 | 11 * |
| 12 * This program is distributed in the hope that it will be useful, but | |
| 13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
| 790 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
| 790 | 20 **/ |
| 21 | |
| 22 | |
| 23 #pragma once | |
| 24 | |
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25 #include "../OrthancFramework.h" |
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26 |
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27 #if !defined(ORTHANC_ENABLE_JPEG) |
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28 # error Macro ORTHANC_ENABLE_JPEG must be defined to use this file |
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29 #endif |
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30 |
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31 #if !defined(ORTHANC_ENABLE_PNG) |
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32 # error Macro ORTHANC_ENABLE_PNG must be defined to use this file |
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33 #endif |
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34 |
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35 #if !defined(ORTHANC_ENABLE_CIVETWEB) |
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36 # error Macro ORTHANC_ENABLE_CIVETWEB must be defined to use this file |
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37 #endif |
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38 |
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39 #if !defined(ORTHANC_ENABLE_MONGOOSE) |
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40 # error Macro ORTHANC_ENABLE_MONGOOSE must be defined to use this file |
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41 #endif |
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42 |
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43 #if !defined(ORTHANC_SANDBOXED) |
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44 # error The macro ORTHANC_SANDBOXED must be defined |
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45 #endif |
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46 |
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47 #if !defined(ORTHANC_ENABLE_DCMTK) |
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48 # error The macro ORTHANC_ENABLE_DCMTK must be defined |
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49 #endif |
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50 |
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51 #if ORTHANC_ENABLE_DCMTK != 1 |
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52 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 to use this file |
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53 #endif |
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54 |
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55 #include "ITagVisitor.h" |
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56 #include "../DicomFormat/DicomInstanceHasher.h" |
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57 #include "../Images/ImageAccessor.h" |
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58 #include "../IDynamicObject.h" |
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59 #include "../Toolbox.h" |
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60 |
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61 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
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62 # include "../RestApi/RestApiOutput.h" |
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63 #endif |
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64 |
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65 #include <boost/shared_ptr.hpp> |
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66 |
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67 |
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68 class DcmDataset; |
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69 class DcmFileFormat; |
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70 |
| 790 | 71 namespace Orthanc |
| 72 { | |
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73 class ORTHANC_PUBLIC ParsedDicomFile : public IDynamicObject |
| 790 | 74 { |
| 75 private: | |
| 794 | 76 struct PImpl; |
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77 boost::shared_ptr<PImpl> pimpl_; |
| 790 | 78 |
| 4200 | 79 ParsedDicomFile(const ParsedDicomFile& other, |
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80 bool keepSopInstanceUid); |
| 790 | 81 |
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82 void CreateFromDicomMap(const DicomMap& source, |
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83 Encoding defaultEncoding, |
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84 bool permissive, |
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85 const std::string& defaultPrivateCreator, |
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86 const std::map<uint16_t, std::string>& privateCreators); |
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87 |
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88 void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep); |
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89 |
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90 void UpdateStorageUid(const DicomTag& tag, |
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91 const std::string& value, |
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92 bool decodeDataUriScheme); |
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93 |
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94 void InvalidateCache(); |
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95 |
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96 bool EmbedContentInternal(const std::string& dataUriScheme); |
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97 |
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98 // For internal use only, in order to provide const-correctness on |
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99 // the top of DCMTK API |
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100 DcmFileFormat& GetDcmtkObjectConst() const; |
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101 |
| 4200 | 102 explicit ParsedDicomFile(DcmFileFormat* dicom); // This takes ownership (no clone) |
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103 |
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104 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1 |
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105 // Alias for binary compatibility with Orthanc Framework 1.7.2 => don't use it anymore |
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106 void DatasetToJson(Json::Value& target, |
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107 DicomToJsonFormat format, |
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108 DicomToJsonFlags flags, |
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109 unsigned int maxStringLength); |
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110 DcmFileFormat& GetDcmtkObject() const; |
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111 void Apply(ITagVisitor& visitor); |
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112 ParsedDicomFile* Clone(bool keepSopInstanceUid); |
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113 bool LookupTransferSyntax(std::string& result); |
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114 bool GetTagValue(std::string& value, |
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115 const DicomTag& tag); |
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116 #endif |
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117 |
| 790 | 118 public: |
| 4199 | 119 explicit ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance |
| 790 | 120 |
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121 ParsedDicomFile(const DicomMap& map, |
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122 Encoding defaultEncoding, |
| 4199 | 123 bool permissive); |
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124 |
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125 ParsedDicomFile(const DicomMap& map, |
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126 Encoding defaultEncoding, |
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127 bool permissive, |
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128 const std::string& defaultPrivateCreator, |
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129 const std::map<uint16_t, std::string>& privateCreators); |
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130 |
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131 ParsedDicomFile(const void* content, |
| 791 | 132 size_t size); |
| 790 | 133 |
| 4199 | 134 explicit ParsedDicomFile(const std::string& content); |
| 790 | 135 |
| 4199 | 136 explicit ParsedDicomFile(DcmDataset& dicom); // This clones the DCMTK object |
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137 |
| 4199 | 138 explicit ParsedDicomFile(DcmFileFormat& dicom); // This clones the DCMTK object |
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139 |
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140 static ParsedDicomFile* AcquireDcmtkObject(DcmFileFormat* dicom); |
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141 |
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142 DcmFileFormat& GetDcmtkObject(); |
| 790 | 143 |
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144 // The "ParsedDicomFile" object cannot be used after calling this method |
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145 DcmFileFormat* ReleaseDcmtkObject(); |
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146 |
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147 ParsedDicomFile* Clone(bool keepSopInstanceUid) const; |
| 790 | 148 |
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149 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
| 790 | 150 void SendPathValue(RestApiOutput& output, |
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151 const UriComponents& uri) const; |
| 790 | 152 |
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153 void Answer(RestApiOutput& output) const; |
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154 #endif |
| 790 | 155 |
| 156 void Remove(const DicomTag& tag); | |
| 157 | |
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158 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) |
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159 void Clear(const DicomTag& tag, |
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160 bool onlyIfExists); |
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161 |
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162 void Replace(const DicomTag& tag, |
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163 const std::string& utf8Value, |
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164 bool decodeDataUriScheme, |
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165 DicomReplaceMode mode, |
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166 const std::string& privateCreator /* used only for private tags */); |
| 1695 | 167 |
| 168 void Replace(const DicomTag& tag, | |
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169 const Json::Value& value, // Assumed to be encoded with UTF-8 |
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170 bool decodeDataUriScheme, |
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171 DicomReplaceMode mode, |
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172 const std::string& privateCreator /* used only for private tags */); |
| 790 | 173 |
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174 void Insert(const DicomTag& tag, |
| 1695 | 175 const Json::Value& value, // Assumed to be encoded with UTF-8 |
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176 bool decodeDataUriScheme, |
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177 const std::string& privateCreator /* used only for private tags */); |
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178 |
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179 // Cannot be applied to private tags |
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180 void ReplacePlainString(const DicomTag& tag, |
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181 const std::string& utf8Value); |
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182 |
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183 // Cannot be applied to private tags |
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184 void SetIfAbsent(const DicomTag& tag, |
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185 const std::string& utf8Value); |
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186 |
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187 void RemovePrivateTags(); |
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188 |
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189 void RemovePrivateTags(const std::set<DicomTag>& toKeep); |
| 790 | 190 |
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191 // WARNING: This function handles the decoding of strings to UTF8 |
| 790 | 192 bool GetTagValue(std::string& value, |
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193 const DicomTag& tag) const; |
| 790 | 194 |
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195 DicomInstanceHasher GetHasher() const; |
| 790 | 196 |
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197 // The "Save" methods are not tagged as "const", as the internal |
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198 // representation might be changed after serialization |
| 790 | 199 void SaveToMemoryBuffer(std::string& buffer); |
| 200 | |
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201 #if ORTHANC_SANDBOXED == 0 |
| 790 | 202 void SaveToFile(const std::string& path); |
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203 #endif |
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204 |
| 1562 | 205 void EmbedContent(const std::string& dataUriScheme); |
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206 |
| 1562 | 207 void EmbedImage(const ImageAccessor& accessor); |
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208 |
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209 void EmbedImage(MimeType mime, |
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210 const std::string& content); |
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211 |
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212 Encoding DetectEncoding(bool& hasCodeExtensions) const; |
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213 |
|
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214 // WARNING: This function only sets the encoding, it will not |
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215 // convert the encoding of the tags. Use "ChangeEncoding()" if need be. |
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216 void SetEncoding(Encoding encoding); |
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217 |
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218 void DatasetToJson(Json::Value& target, |
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219 DicomToJsonFormat format, |
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220 DicomToJsonFlags flags, |
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221 unsigned int maxStringLength) const; |
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222 |
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223 void DatasetToJson(Json::Value& target, |
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224 DicomToJsonFormat format, |
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225 DicomToJsonFlags flags, |
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226 unsigned int maxStringLength, |
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227 const std::set<DicomTag>& ignoreTagLength) const; |
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228 |
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229 void HeaderToJson(Json::Value& target, |
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230 DicomToJsonFormat format) const; |
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231 |
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232 bool HasTag(const DicomTag& tag) const; |
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233 |
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234 void EmbedPdf(const std::string& pdf); |
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235 |
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236 bool ExtractPdf(std::string& pdf) const; |
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237 |
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238 void GetRawFrame(std::string& target, // OUT |
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239 MimeType& mime, // OUT |
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240 unsigned int frameId) const; // IN |
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241 |
|
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242 unsigned int GetFramesCount() const; |
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243 |
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244 static ParsedDicomFile* CreateFromJson(const Json::Value& value, |
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245 DicomFromJsonFlags flags, |
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246 const std::string& privateCreator); |
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247 |
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248 void ChangeEncoding(Encoding target); |
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249 |
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250 /** |
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251 * The DICOM tags with a string whose size is greater than |
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252 * "maxTagLength", are replaced by a DicomValue whose type is |
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253 * "DicomValue_Null". If "maxTagLength" is zero, all the leaf tags |
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254 * are included, independently of their length. |
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255 **/ |
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256 void ExtractDicomSummary(DicomMap& target, |
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257 unsigned int maxTagLength) const; |
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258 |
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259 /** |
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260 * This flavor can be used to bypass the "maxTagLength" limitation |
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261 * on a selected set of DICOM tags. |
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262 **/ |
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263 void ExtractDicomSummary(DicomMap& target, |
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264 unsigned int maxTagLength, |
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265 const std::set<DicomTag>& ignoreTagLength) const; |
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266 |
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267 bool LookupTransferSyntax(std::string& result) const; |
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268 |
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269 bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const; |
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270 |
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271 void Apply(ITagVisitor& visitor) const; |
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272 |
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273 // Decode the given frame, using the built-in DICOM decoder of Orthanc |
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274 ImageAccessor* DecodeFrame(unsigned int frame) const; |
| 790 | 275 }; |
| 276 } |