Mercurial > hg > orthanc
annotate OrthancServer/FromDcmtkBridge.cpp @ 2216:9a8fab016145
sample worklist plugin fine-tuning the C-Find query
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 12 Dec 2016 11:01:09 +0100 |
parents | e3fd5bc429a2 |
children | 3eefb84ac0bd |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
0 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
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32 |
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33 #include "PrecompiledHeadersServer.h" |
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34 |
71 | 35 #ifndef NOMINMAX |
36 #define NOMINMAX | |
37 #endif | |
0 | 38 |
39 #include "FromDcmtkBridge.h" | |
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40 #include "ToDcmtkBridge.h" |
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41 #include "../Core/Logging.h" |
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42 #include "../Core/SystemToolbox.h" |
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43 #include "../Core/Toolbox.h" |
2142 | 44 #include "../Core/TemporaryFile.h" |
62 | 45 #include "../Core/OrthancException.h" |
0 | 46 |
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47 #include <list> |
71 | 48 #include <limits> |
49 | |
0 | 50 #include <boost/lexical_cast.hpp> |
1656 | 51 #include <boost/filesystem.hpp> |
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52 #include <boost/algorithm/string/predicate.hpp> |
0 | 53 |
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54 #include <dcmtk/dcmdata/dcdeftag.h> |
0 | 55 #include <dcmtk/dcmdata/dcdicent.h> |
56 #include <dcmtk/dcmdata/dcdict.h> | |
57 #include <dcmtk/dcmdata/dcfilefo.h> | |
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58 #include <dcmtk/dcmdata/dcostrmb.h> |
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59 #include <dcmtk/dcmdata/dcpixel.h> |
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60 #include <dcmtk/dcmdata/dcuid.h> |
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61 #include <dcmtk/dcmdata/dcistrmb.h> |
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62 |
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63 #include <dcmtk/dcmdata/dcvrae.h> |
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64 #include <dcmtk/dcmdata/dcvras.h> |
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65 #include <dcmtk/dcmdata/dcvrat.h> |
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66 #include <dcmtk/dcmdata/dcvrcs.h> |
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67 #include <dcmtk/dcmdata/dcvrda.h> |
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68 #include <dcmtk/dcmdata/dcvrds.h> |
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69 #include <dcmtk/dcmdata/dcvrdt.h> |
0 | 70 #include <dcmtk/dcmdata/dcvrfd.h> |
71 #include <dcmtk/dcmdata/dcvrfl.h> | |
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72 #include <dcmtk/dcmdata/dcvris.h> |
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73 #include <dcmtk/dcmdata/dcvrlo.h> |
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74 #include <dcmtk/dcmdata/dcvrlt.h> |
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75 #include <dcmtk/dcmdata/dcvrpn.h> |
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76 #include <dcmtk/dcmdata/dcvrsh.h> |
0 | 77 #include <dcmtk/dcmdata/dcvrsl.h> |
78 #include <dcmtk/dcmdata/dcvrss.h> | |
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79 #include <dcmtk/dcmdata/dcvrst.h> |
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80 #include <dcmtk/dcmdata/dcvrtm.h> |
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81 #include <dcmtk/dcmdata/dcvrui.h> |
0 | 82 #include <dcmtk/dcmdata/dcvrul.h> |
83 #include <dcmtk/dcmdata/dcvrus.h> | |
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84 #include <dcmtk/dcmdata/dcvrut.h> |
0 | 85 |
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86 |
1930 | 87 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
88 #include <EmbeddedResources.h> | |
89 #endif | |
90 | |
91 | |
62 | 92 namespace Orthanc |
0 | 93 { |
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94 static inline uint16_t GetCharValue(char c) |
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95 { |
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96 if (c >= '0' && c <= '9') |
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97 return c - '0'; |
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98 else if (c >= 'a' && c <= 'f') |
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99 return c - 'a' + 10; |
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100 else if (c >= 'A' && c <= 'F') |
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101 return c - 'A' + 10; |
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102 else |
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103 return 0; |
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104 } |
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105 |
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106 static inline uint16_t GetTagValue(const char* c) |
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107 { |
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108 return ((GetCharValue(c[0]) << 12) + |
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109 (GetCharValue(c[1]) << 8) + |
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110 (GetCharValue(c[2]) << 4) + |
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111 GetCharValue(c[3])); |
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112 } |
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113 |
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114 |
1656 | 115 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
116 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary, | |
117 EmbeddedResources::FileResourceId resource) | |
118 { | |
2017 | 119 std::string content; |
120 EmbeddedResources::GetFileResource(content, resource); | |
1656 | 121 |
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122 TemporaryFile tmp; |
2017 | 123 tmp.Write(content); |
1656 | 124 |
125 if (!dictionary.loadDictionary(tmp.GetPath().c_str())) | |
126 { | |
2017 | 127 LOG(ERROR) << "Cannot read embedded dictionary. Under Windows, make sure that " |
128 << "your TEMP directory does not contain special characters."; | |
1656 | 129 throw OrthancException(ErrorCode_InternalError); |
130 } | |
131 } | |
132 | |
133 #else | |
134 static void LoadExternalDictionary(DcmDataDictionary& dictionary, | |
135 const std::string& directory, | |
136 const std::string& filename) | |
137 { | |
138 boost::filesystem::path p = directory; | |
139 p = p / filename; | |
140 | |
141 LOG(WARNING) << "Loading the external DICOM dictionary " << p; | |
142 | |
143 if (!dictionary.loadDictionary(p.string().c_str())) | |
144 { | |
145 throw OrthancException(ErrorCode_InternalError); | |
146 } | |
147 } | |
148 #endif | |
149 | |
150 | |
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151 namespace |
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152 { |
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153 class DictionaryLocker |
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154 { |
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155 private: |
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156 DcmDataDictionary& dictionary_; |
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157 |
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158 public: |
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159 DictionaryLocker() : dictionary_(dcmDataDict.wrlock()) |
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160 { |
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161 } |
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162 |
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163 ~DictionaryLocker() |
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164 { |
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165 dcmDataDict.unlock(); |
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166 } |
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167 |
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168 DcmDataDictionary& operator*() |
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169 { |
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170 return dictionary_; |
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171 } |
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172 |
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173 DcmDataDictionary* operator->() |
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174 { |
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175 return &dictionary_; |
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176 } |
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177 }; |
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178 } |
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179 |
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180 |
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181 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary) |
1656 | 182 { |
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183 { |
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184 DictionaryLocker locker; |
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185 |
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186 locker->clear(); |
1656 | 187 |
188 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 | |
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189 LOG(WARNING) << "Loading the embedded dictionaries"; |
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190 /** |
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191 * Do not load DICONDE dictionary, it breaks the other tags. The |
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192 * command "strace storescu 2>&1 |grep dic" shows that DICONDE |
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193 * dictionary is not loaded by storescu. |
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194 **/ |
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195 //LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICONDE); |
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197 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICOM); |
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198 |
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199 if (loadPrivateDictionary) |
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200 { |
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201 LOG(INFO) << "Loading the embedded dictionary of private tags"; |
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202 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_PRIVATE); |
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203 } |
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204 else |
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205 { |
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206 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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207 } |
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209 #elif defined(__linux__) || defined(__FreeBSD_kernel__) |
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210 std::string path = DCMTK_DICTIONARY_DIR; |
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212 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE); |
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213 if (env != NULL) |
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214 { |
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215 path = std::string(env); |
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216 } |
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218 LoadExternalDictionary(*locker, path, "dicom.dic"); |
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219 |
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220 if (loadPrivateDictionary) |
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221 { |
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222 LoadExternalDictionary(*locker, path, "private.dic"); |
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223 } |
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224 else |
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225 { |
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226 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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227 } |
1656 | 228 |
229 #else | |
230 #error Support your platform here | |
231 #endif | |
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232 } |
1656 | 233 |
234 /* make sure data dictionary is loaded */ | |
235 if (!dcmDataDict.isDictionaryLoaded()) | |
236 { | |
237 LOG(ERROR) << "No DICOM dictionary loaded, check environment variable: " << DCM_DICT_ENVIRONMENT_VARIABLE; | |
238 throw OrthancException(ErrorCode_InternalError); | |
239 } | |
240 | |
241 { | |
242 // Test the dictionary with a simple DICOM tag | |
243 DcmTag key(0x0010, 0x1030); // This is PatientWeight | |
244 if (key.getEVR() != EVR_DS) | |
245 { | |
246 LOG(ERROR) << "The DICOM dictionary has not been correctly read"; | |
247 throw OrthancException(ErrorCode_InternalError); | |
248 } | |
249 } | |
250 } | |
251 | |
252 | |
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253 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag, |
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254 ValueRepresentation vr, |
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255 const std::string& name, |
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256 unsigned int minMultiplicity, |
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257 unsigned int maxMultiplicity, |
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258 const std::string& privateCreator) |
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259 { |
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260 if (minMultiplicity < 1) |
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261 { |
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262 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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263 } |
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264 |
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265 bool arbitrary = false; |
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266 if (maxMultiplicity == 0) |
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267 { |
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268 maxMultiplicity = DcmVariableVM; |
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269 arbitrary = true; |
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270 } |
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271 else if (maxMultiplicity < minMultiplicity) |
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272 { |
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273 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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274 } |
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275 |
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276 DcmEVR evr = ToDcmtkBridge::Convert(vr); |
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277 |
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278 LOG(INFO) << "Registering tag in dictionary: " << tag << " " << (DcmVR(evr).getValidVRName()) << " " |
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279 << name << " (multiplicity: " << minMultiplicity << "-" |
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280 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")"; |
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281 |
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282 std::auto_ptr<DcmDictEntry> entry; |
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283 if (privateCreator.empty()) |
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284 { |
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285 if (tag.GetGroup() % 2 == 1) |
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286 { |
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287 char buf[128]; |
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288 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), " |
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289 "but no private creator was associated with it", |
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290 tag.GetGroup(), tag.GetElement()); |
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291 LOG(WARNING) << buf; |
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292 } |
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293 |
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294 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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295 tag.GetElement(), |
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296 evr, name.c_str(), |
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297 static_cast<int>(minMultiplicity), |
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298 static_cast<int>(maxMultiplicity), |
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299 NULL /* version */, |
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300 OFTrue /* doCopyString */, |
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301 NULL /* private creator */)); |
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302 } |
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303 else |
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304 { |
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305 // "Private Data Elements have an odd Group Number that is not |
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306 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or |
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307 // (FFFF,eeee)." |
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308 if (tag.GetGroup() % 2 == 0 /* even */ || |
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309 tag.GetGroup() == 0x0001 || |
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310 tag.GetGroup() == 0x0003 || |
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311 tag.GetGroup() == 0x0005 || |
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312 tag.GetGroup() == 0x0007 || |
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313 tag.GetGroup() == 0xffff) |
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314 { |
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315 char buf[128]; |
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316 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009", |
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317 tag.GetGroup(), tag.GetElement()); |
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318 LOG(ERROR) << buf; |
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319 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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320 } |
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321 |
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322 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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323 tag.GetElement(), |
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324 evr, name.c_str(), |
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325 static_cast<int>(minMultiplicity), |
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326 static_cast<int>(maxMultiplicity), |
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327 "private" /* version */, |
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328 OFTrue /* doCopyString */, |
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329 privateCreator.c_str())); |
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330 } |
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331 |
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332 entry->setGroupRangeRestriction(DcmDictRange_Unspecified); |
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333 entry->setElementRangeRestriction(DcmDictRange_Unspecified); |
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334 |
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335 { |
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336 DictionaryLocker locker; |
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337 |
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338 if (locker->findEntry(name.c_str())) |
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339 { |
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340 LOG(ERROR) << "Cannot register two tags with the same symbolic name \"" << name << "\""; |
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341 throw OrthancException(ErrorCode_AlreadyExistingTag); |
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342 } |
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343 |
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344 locker->addEntry(entry.release()); |
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345 } |
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346 } |
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347 |
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348 |
1936 | 349 Encoding FromDcmtkBridge::DetectEncoding(DcmItem& dataset, |
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350 Encoding defaultEncoding) |
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351 { |
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352 Encoding encoding = defaultEncoding; |
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353 |
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354 OFString tmp; |
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355 if (dataset.findAndGetOFString(DCM_SpecificCharacterSet, tmp).good()) |
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356 { |
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357 std::string characterSet = Toolbox::StripSpaces(std::string(tmp.c_str())); |
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358 |
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359 if (characterSet.empty()) |
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360 { |
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361 // Empty specific character set tag: Use the default encoding |
1087 | 362 } |
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363 else if (GetDicomEncoding(encoding, characterSet.c_str())) |
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365 // The specific character set is supported by the Orthanc core |
1087 | 366 } |
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367 else |
1087 | 368 { |
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369 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet |
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370 << ", fallback to ASCII (remove all special characters)"; |
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371 encoding = Encoding_Ascii; |
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372 } |
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373 } |
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374 else |
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375 { |
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376 // No specific character set tag: Use the default encoding |
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377 } |
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378 |
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379 return encoding; |
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380 } |
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381 |
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382 |
2125 | 383 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, |
384 DcmItem& dataset, | |
385 unsigned int maxStringLength, | |
386 Encoding defaultEncoding) | |
0 | 387 { |
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388 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
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389 |
0 | 390 target.Clear(); |
391 for (unsigned long i = 0; i < dataset.card(); i++) | |
392 { | |
393 DcmElement* element = dataset.getElement(i); | |
394 if (element && element->isLeaf()) | |
395 { | |
396 target.SetValue(element->getTag().getGTag(), | |
397 element->getTag().getETag(), | |
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398 ConvertLeafElement(*element, DicomToJsonFlags_Default, maxStringLength, encoding)); |
0 | 399 } |
400 } | |
401 } | |
402 | |
403 | |
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404 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag) |
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405 { |
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406 return DicomTag(tag.getGTag(), tag.getETag()); |
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407 } |
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408 |
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409 |
0 | 410 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element) |
411 { | |
412 return DicomTag(element.getGTag(), element.getETag()); | |
413 } | |
414 | |
415 | |
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416 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element, |
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417 DicomToJsonFlags flags, |
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418 unsigned int maxStringLength, |
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419 Encoding encoding) |
0 | 420 { |
421 if (!element.isLeaf()) | |
422 { | |
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423 // This function is only applicable to leaf elements |
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424 throw OrthancException(ErrorCode_BadParameterType); |
0 | 425 } |
426 | |
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427 char *c = NULL; |
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428 if (element.isaString() && |
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429 element.getString(c).good()) |
0 | 430 { |
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431 if (c == NULL) // This case corresponds to the empty string |
0 | 432 { |
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433 return new DicomValue("", false); |
0 | 434 } |
435 else | |
436 { | |
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437 std::string s(c); |
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438 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding); |
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439 |
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440 if (maxStringLength != 0 && |
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441 utf8.size() > maxStringLength) |
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442 { |
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443 return new DicomValue; // Too long, create a NULL value |
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444 } |
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445 else |
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446 { |
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447 return new DicomValue(utf8, false); |
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448 } |
0 | 449 } |
450 } | |
451 | |
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452 |
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453 if (element.getVR() == EVR_UN) |
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454 { |
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455 // Unknown value representation: Lookup in the dictionary. This |
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456 // is notably the case for private tags registered with the |
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457 // "Dictionary" configuration option. |
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458 DictionaryLocker locker; |
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459 |
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460 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(), |
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461 element.getTag().getPrivateCreator()); |
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462 if (entry != NULL && |
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463 entry->getVR().isaString()) |
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464 { |
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465 Uint8* data = NULL; |
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466 |
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467 // At (*), we do not try and convert to UTF-8, as nothing says |
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468 // the encoding of the private tag is the same as that of the |
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469 // remaining of the DICOM dataset. Only go for ASCII strings. |
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470 |
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471 if (element.getUint8Array(data) == EC_Normal && |
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472 Toolbox::IsAsciiString(data, element.getLength())) // (*) |
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473 { |
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474 if (data == NULL) |
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475 { |
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476 return new DicomValue("", false); // Empty string |
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477 } |
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478 else if (maxStringLength != 0 && |
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479 element.getLength() > maxStringLength) |
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480 { |
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481 return new DicomValue; // Too long, create a NULL value |
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482 } |
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483 else |
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484 { |
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485 std::string s(reinterpret_cast<const char*>(data), element.getLength()); |
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486 return new DicomValue(s, false); |
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487 } |
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488 } |
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489 } |
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490 } |
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491 |
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492 |
0 | 493 try |
494 { | |
495 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
496 switch (element.getVR()) | |
497 { | |
498 | |
499 /** | |
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500 * Deal with binary data (including PixelData). |
0 | 501 **/ |
306
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502 |
302
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503 case EVR_OB: // other byte |
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504 case EVR_OF: // other float |
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505 case EVR_OW: // other word |
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506 case EVR_UN: // unknown value representation |
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507 case EVR_ox: // OB or OW depending on context |
306
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508 case EVR_DS: // decimal string |
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509 case EVR_IS: // integer string |
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510 case EVR_AS: // age string |
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511 case EVR_DA: // date string |
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512 case EVR_DT: // date time string |
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513 case EVR_TM: // time string |
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514 case EVR_AE: // application entity title |
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515 case EVR_CS: // code string |
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516 case EVR_SH: // short string |
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517 case EVR_LO: // long string |
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518 case EVR_ST: // short text |
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519 case EVR_LT: // long text |
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520 case EVR_UT: // unlimited text |
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521 case EVR_PN: // person name |
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522 case EVR_UI: // unique identifier |
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523 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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524 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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525 { |
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526 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull)) |
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527 { |
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528 Uint8* data = NULL; |
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529 if (element.getUint8Array(data) == EC_Normal) |
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530 { |
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531 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true); |
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532 } |
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533 } |
0 | 534 |
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535 return new DicomValue; |
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536 } |
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537 |
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538 /** |
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539 * Numeric types |
1818
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540 **/ |
0 | 541 |
302
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542 case EVR_SL: // signed long |
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543 { |
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544 Sint32 f; |
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545 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good()) |
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546 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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547 else |
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548 return new DicomValue; |
302
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549 } |
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550 |
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551 case EVR_SS: // signed short |
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552 { |
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553 Sint16 f; |
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554 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good()) |
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555 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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556 else |
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557 return new DicomValue; |
302
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558 } |
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559 |
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560 case EVR_UL: // unsigned long |
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561 { |
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562 Uint32 f; |
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563 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good()) |
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564 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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565 else |
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566 return new DicomValue; |
302
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567 } |
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568 |
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569 case EVR_US: // unsigned short |
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570 { |
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571 Uint16 f; |
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572 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good()) |
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573 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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574 else |
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575 return new DicomValue; |
302
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576 } |
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|
577 |
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578 case EVR_FL: // float single-precision |
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579 { |
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|
580 Float32 f; |
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|
581 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good()) |
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582 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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583 else |
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584 return new DicomValue; |
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585 } |
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586 |
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587 case EVR_FD: // float double-precision |
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588 { |
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589 Float64 f; |
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590 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good()) |
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591 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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592 else |
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593 return new DicomValue; |
1131 | 594 } |
595 | |
596 | |
597 /** | |
598 * Attribute tag. | |
599 **/ | |
600 | |
601 case EVR_AT: | |
602 { | |
1147 | 603 DcmTagKey tag; |
604 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good()) | |
605 { | |
606 DicomTag t(tag.getGroup(), tag.getElement()); | |
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607 return new DicomValue(t.Format(), false); |
1147 | 608 } |
1131 | 609 else |
1147 | 610 { |
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611 return new DicomValue; |
1147 | 612 } |
302
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613 } |
0 | 614 |
615 | |
616 /** | |
302
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617 * Sequence types, should never occur at this point because of |
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618 * "element.isLeaf()". |
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619 **/ |
0 | 620 |
302
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621 case EVR_SQ: // sequence of items |
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622 return new DicomValue; |
0 | 623 |
624 | |
302
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625 /** |
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626 * Internal to DCMTK. |
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627 **/ |
0 | 628 |
302
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629 case EVR_xs: // SS or US depending on context |
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630 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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631 case EVR_na: // na="not applicable", for data which has no VR |
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632 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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633 case EVR_item: // used internally for items |
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634 case EVR_metainfo: // used internally for meta info datasets |
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635 case EVR_dataset: // used internally for datasets |
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636 case EVR_fileFormat: // used internally for DICOM files |
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637 case EVR_dicomDir: // used internally for DICOMDIR objects |
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638 case EVR_dirRecord: // used internally for DICOMDIR records |
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639 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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640 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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641 case EVR_PixelData: // used internally for uncompressed pixeld data |
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642 case EVR_OverlayData: // used internally for overlay data |
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643 return new DicomValue; |
0 | 644 |
645 | |
302
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646 /** |
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647 * Default case. |
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648 **/ |
0 | 649 |
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650 default: |
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651 return new DicomValue; |
0 | 652 } |
653 } | |
654 catch (boost::bad_lexical_cast) | |
655 { | |
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656 return new DicomValue; |
0 | 657 } |
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658 catch (std::bad_cast) |
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659 { |
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660 return new DicomValue; |
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661 } |
0 | 662 } |
663 | |
664 | |
1687 | 665 static Json::Value& PrepareNode(Json::Value& parent, |
666 DcmElement& element, | |
667 DicomToJsonFormat format) | |
0 | 668 { |
1687 | 669 assert(parent.type() == Json::objectValue); |
0 | 670 |
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671 DicomTag tag(FromDcmtkBridge::GetTag(element)); |
305
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672 const std::string formattedTag = tag.Format(); |
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673 |
1688
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674 if (format == DicomToJsonFormat_Short) |
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675 { |
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676 parent[formattedTag] = Json::nullValue; |
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677 return parent[formattedTag]; |
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678 } |
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679 |
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680 // This code gives access to the name of the private tags |
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diff
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681 std::string tagName = FromDcmtkBridge::GetTagName(element); |
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|
682 |
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|
683 switch (format) |
0 | 684 { |
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685 case DicomToJsonFormat_Human: |
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686 parent[tagName] = Json::nullValue; |
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687 return parent[tagName]; |
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688 |
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689 case DicomToJsonFormat_Full: |
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690 { |
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691 parent[formattedTag] = Json::objectValue; |
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692 Json::Value& node = parent[formattedTag]; |
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693 |
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694 if (element.isLeaf()) |
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695 { |
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696 node["Name"] = tagName; |
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697 |
2076 | 698 if (element.getTag().getPrivateCreator() != NULL) |
1688
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699 { |
2076 | 700 node["PrivateCreator"] = element.getTag().getPrivateCreator(); |
1688
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|
701 } |
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|
702 |
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|
703 return node; |
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|
704 } |
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705 else |
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|
706 { |
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707 node["Name"] = tagName; |
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708 node["Type"] = "Sequence"; |
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709 node["Value"] = Json::nullValue; |
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710 return node["Value"]; |
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711 } |
306
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712 } |
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713 |
1688
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|
714 default: |
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|
715 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 716 } |
717 } | |
718 | |
719 | |
720 static void LeafValueToJson(Json::Value& target, | |
721 const DicomValue& value, | |
722 DicomToJsonFormat format, | |
1738
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DicomToJsonFlags_IncludeBinary
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|
723 DicomToJsonFlags flags, |
1688
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|
724 unsigned int maxStringLength) |
1687 | 725 { |
1738
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726 Json::Value* targetValue = NULL; |
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727 Json::Value* targetType = NULL; |
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|
728 |
1688
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DicomToJsonFormat enumeration
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|
729 switch (format) |
1687 | 730 { |
1688
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|
731 case DicomToJsonFormat_Short: |
1860
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|
732 case DicomToJsonFormat_Human: |
1688
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|
733 { |
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DicomToJsonFormat enumeration
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|
734 assert(target.type() == Json::nullValue); |
1738
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735 targetValue = ⌖ |
1688
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|
736 break; |
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|
737 } |
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|
738 |
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|
739 case DicomToJsonFormat_Full: |
0 | 740 { |
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|
741 assert(target.type() == Json::objectValue); |
1738
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DicomToJsonFlags_IncludeBinary
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|
742 target["Value"] = Json::nullValue; |
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DicomToJsonFlags_IncludeBinary
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|
743 target["Type"] = Json::nullValue; |
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DicomToJsonFlags_IncludeBinary
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parents:
1737
diff
changeset
|
744 targetType = &target["Type"]; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
745 targetValue = &target["Value"]; |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
746 break; |
0 | 747 } |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
748 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
749 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
750 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 751 } |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
752 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
753 assert(targetValue != NULL); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
754 assert(targetValue->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
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diff
changeset
|
755 assert(targetType == NULL || targetType->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
756 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
757 if (value.IsNull()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
758 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
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parents:
1737
diff
changeset
|
759 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
760 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
761 *targetType = "Null"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
762 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
763 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
764 else if (value.IsBinary()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
765 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
766 if (flags & DicomToJsonFlags_ConvertBinaryToAscii) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
767 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
768 *targetValue = Toolbox::ConvertToAscii(value.GetContent()); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
769 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
770 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
771 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
772 std::string s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
773 value.FormatDataUriScheme(s); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
774 *targetValue = s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
775 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
776 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
777 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
778 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
779 *targetType = "Binary"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
780 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
781 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
782 else if (maxStringLength == 0 || |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
783 value.GetContent().size() <= maxStringLength) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
784 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
785 *targetValue = value.GetContent(); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
786 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
787 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
788 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
789 *targetType = "String"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
790 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
791 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
792 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
793 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
794 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
795 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
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parents:
1737
diff
changeset
|
796 *targetType = "TooLong"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
797 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
798 } |
1687 | 799 } |
35
f6d12037f886
full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
800 |
1687 | 801 |
2126 | 802 void FromDcmtkBridge::ElementToJson(Json::Value& parent, |
803 DcmElement& element, | |
804 DicomToJsonFormat format, | |
805 DicomToJsonFlags flags, | |
806 unsigned int maxStringLength, | |
807 Encoding encoding) | |
1687 | 808 { |
1691 | 809 if (parent.type() == Json::nullValue) |
810 { | |
811 parent = Json::objectValue; | |
812 } | |
813 | |
814 assert(parent.type() == Json::objectValue); | |
1687 | 815 Json::Value& target = PrepareNode(parent, element, format); |
816 | |
817 if (element.isLeaf()) | |
818 { | |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
819 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
820 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement(element, flags, 0, encoding)); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
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parents:
1737
diff
changeset
|
821 LeafValueToJson(target, *v, format, flags, maxStringLength); |
0 | 822 } |
823 else | |
824 { | |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
825 assert(target.type() == Json::nullValue); |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
826 target = Json::arrayValue; |
0 | 827 |
828 // "All subclasses of DcmElement except for DcmSequenceOfItems | |
829 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset | |
1687 | 830 // etc. are not." The following dynamic_cast is thus OK. |
0 | 831 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
832 | |
833 for (unsigned long i = 0; i < sequence.card(); i++) | |
834 { | |
835 DcmItem* child = sequence.getItem(i); | |
1687 | 836 Json::Value& v = target.append(Json::objectValue); |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
837 DatasetToJson(v, *child, format, flags, maxStringLength, encoding); |
1687 | 838 } |
0 | 839 } |
840 } | |
841 | |
842 | |
2126 | 843 void FromDcmtkBridge::DatasetToJson(Json::Value& parent, |
844 DcmItem& item, | |
845 DicomToJsonFormat format, | |
846 DicomToJsonFlags flags, | |
847 unsigned int maxStringLength, | |
848 Encoding encoding) | |
1686 | 849 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
850 assert(parent.type() == Json::objectValue); |
1686 | 851 |
852 for (unsigned long i = 0; i < item.card(); i++) | |
853 { | |
854 DcmElement* element = item.getElement(i); | |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
855 if (element == NULL) |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
856 { |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
857 throw OrthancException(ErrorCode_InternalError); |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
858 } |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
859 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
860 DicomTag tag(FromDcmtkBridge::Convert(element->getTag())); |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
861 |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
862 /*element->getTag().isPrivate()*/ |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
863 if (tag.IsPrivate() && |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
864 !(flags & DicomToJsonFlags_IncludePrivateTags)) |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
865 { |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
866 continue; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
867 } |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
868 |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
869 if (!(flags & DicomToJsonFlags_IncludeUnknownTags)) |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
870 { |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
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1735
diff
changeset
|
871 DictionaryLocker locker; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
872 if (locker->findEntry(element->getTag(), NULL) == NULL) |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
873 { |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
874 continue; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
875 } |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
876 } |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
877 |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
878 DcmEVR evr = element->getTag().getEVR(); |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
879 if (evr == EVR_OB || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
880 evr == EVR_OF || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
881 evr == EVR_OW || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
882 evr == EVR_UN || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
883 evr == EVR_ox) |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
884 { |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
885 // This is a binary tag |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
886 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
887 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary))) |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
888 { |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
889 continue; |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
890 } |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
891 } |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
892 |
2126 | 893 FromDcmtkBridge::ElementToJson(parent, *element, format, flags, maxStringLength, encoding); |
1686 | 894 } |
895 } | |
896 | |
897 | |
2126 | 898 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
899 DcmDataset& dataset, | |
900 DicomToJsonFormat format, | |
901 DicomToJsonFlags flags, | |
2131 | 902 unsigned int maxStringLength, |
903 Encoding defaultEncoding) | |
0 | 904 { |
2131 | 905 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
2126 | 906 |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
907 target = Json::objectValue; |
2126 | 908 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding); |
0 | 909 } |
910 | |
911 | |
2126 | 912 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target, |
913 DcmMetaInfo& dataset, | |
914 DicomToJsonFormat format, | |
915 DicomToJsonFlags flags, | |
916 unsigned int maxStringLength) | |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
changeset
|
917 { |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
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918 target = Json::objectValue; |
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919 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii); |
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920 } |
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921 |
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922 |
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923 |
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924 static std::string GetTagNameInternal(DcmTag& tag) |
0 | 925 { |
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926 { |
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927 // Some patches for important tags because of different DICOM |
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928 // dictionaries between DCMTK versions |
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929 DicomTag tmp(tag.getGroup(), tag.getElement()); |
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930 std::string n = tmp.GetMainTagsName(); |
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931 if (n.size() != 0) |
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932 { |
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933 return n; |
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934 } |
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935 // End of patches |
291
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936 } |
106 | 937 |
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938 #if 0 |
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939 // This version explicitly calls the dictionary |
0 | 940 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
941 const DcmDictEntry* entry = dict.findEntry(tag, NULL); | |
942 | |
306
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943 std::string s(DcmTag_ERROR_TagName); |
0 | 944 if (entry != NULL) |
945 { | |
946 s = std::string(entry->getTagName()); | |
947 } | |
948 | |
949 dcmDataDict.unlock(); | |
950 return s; | |
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951 #else |
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952 const char* name = tag.getTagName(); |
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953 if (name == NULL) |
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954 { |
306
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955 return DcmTag_ERROR_TagName; |
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956 } |
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957 else |
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958 { |
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959 return std::string(name); |
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960 } |
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961 #endif |
0 | 962 } |
963 | |
964 | |
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965 std::string FromDcmtkBridge::GetTagName(const DicomTag& t, |
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966 const std::string& privateCreator) |
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967 { |
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968 DcmTag tag(t.GetGroup(), t.GetElement()); |
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969 |
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970 if (!privateCreator.empty()) |
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971 { |
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972 tag.setPrivateCreator(privateCreator.c_str()); |
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973 } |
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974 |
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975 return GetTagNameInternal(tag); |
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976 } |
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977 |
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978 |
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979 std::string FromDcmtkBridge::GetTagName(const DcmElement& element) |
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980 { |
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981 // Copy the tag to ensure const-correctness of DcmElement. Note |
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982 // that the private creator information is also copied. |
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983 DcmTag tag(element.getTag()); |
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984 |
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985 return GetTagNameInternal(tag); |
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986 } |
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987 |
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988 |
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989 |
304 | 990 DicomTag FromDcmtkBridge::ParseTag(const char* name) |
0 | 991 { |
304 | 992 if (strlen(name) == 9 && |
993 isxdigit(name[0]) && | |
994 isxdigit(name[1]) && | |
995 isxdigit(name[2]) && | |
996 isxdigit(name[3]) && | |
991
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997 (name[4] == '-' || name[4] == ',') && |
304 | 998 isxdigit(name[5]) && |
999 isxdigit(name[6]) && | |
1000 isxdigit(name[7]) && | |
1001 isxdigit(name[8])) | |
1002 { | |
1003 uint16_t group = GetTagValue(name); | |
1004 uint16_t element = GetTagValue(name + 5); | |
1005 return DicomTag(group, element); | |
1006 } | |
1007 | |
1861
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1008 if (strlen(name) == 8 && |
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1009 isxdigit(name[0]) && |
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1010 isxdigit(name[1]) && |
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1011 isxdigit(name[2]) && |
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1012 isxdigit(name[3]) && |
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1013 isxdigit(name[4]) && |
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1014 isxdigit(name[5]) && |
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1015 isxdigit(name[6]) && |
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1016 isxdigit(name[7])) |
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1017 { |
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1018 uint16_t group = GetTagValue(name); |
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1019 uint16_t element = GetTagValue(name + 4); |
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1020 return DicomTag(group, element); |
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1021 } |
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1022 |
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1023 #if 0 |
0 | 1024 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1025 const DcmDictEntry* entry = dict.findEntry(name); | |
1026 | |
1027 if (entry == NULL) | |
1028 { | |
1029 dcmDataDict.unlock(); | |
1582
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1030 throw OrthancException(ErrorCode_UnknownDicomTag); |
0 | 1031 } |
1032 else | |
1033 { | |
1034 DcmTagKey key = entry->getKey(); | |
1035 DicomTag tag(key.getGroup(), key.getElement()); | |
1036 dcmDataDict.unlock(); | |
1037 return tag; | |
1038 } | |
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1039 #else |
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1040 DcmTag tag; |
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1041 if (DcmTag::findTagFromName(name, tag).good()) |
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1042 { |
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1043 return DicomTag(tag.getGTag(), tag.getETag()); |
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1044 } |
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1045 else |
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1046 { |
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1047 throw OrthancException(ErrorCode_UnknownDicomTag); |
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1048 } |
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1049 #endif |
0 | 1050 } |
1051 | |
1052 | |
1655
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1053 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag) |
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1054 { |
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1055 DcmTag tmp(tag.GetGroup(), tag.GetElement()); |
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1056 return tmp.isUnknownVR(); |
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1057 } |
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1058 |
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1059 |
0 | 1060 void FromDcmtkBridge::ToJson(Json::Value& result, |
1368 | 1061 const DicomMap& values, |
1062 bool simplify) | |
0 | 1063 { |
1064 if (result.type() != Json::objectValue) | |
1065 { | |
62 | 1066 throw OrthancException(ErrorCode_BadParameterType); |
0 | 1067 } |
1068 | |
1069 result.clear(); | |
1070 | |
1071 for (DicomMap::Map::const_iterator | |
656 | 1072 it = values.map_.begin(); it != values.map_.end(); ++it) |
0 | 1073 { |
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1074 // TODO Inject PrivateCreator if some is available in the DicomMap? |
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1075 const std::string tagName = GetTagName(it->first, ""); |
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1076 |
1368 | 1077 if (simplify) |
1078 { | |
1737
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1079 if (it->second->IsNull()) |
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1080 { |
2115
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1081 result[tagName] = Json::nullValue; |
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1082 } |
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1083 else |
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1084 { |
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1085 // TODO IsBinary |
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1086 result[tagName] = it->second->GetContent(); |
1737
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1087 } |
1368 | 1088 } |
1089 else | |
1090 { | |
1091 Json::Value value = Json::objectValue; | |
1092 | |
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1093 value["Name"] = tagName; |
1368 | 1094 |
1095 if (it->second->IsNull()) | |
1096 { | |
1097 value["Type"] = "Null"; | |
1098 value["Value"] = Json::nullValue; | |
1099 } | |
1100 else | |
1101 { | |
1737
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1102 // TODO IsBinary |
1368 | 1103 value["Type"] = "String"; |
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|
1104 value["Value"] = it->second->GetContent(); |
1368 | 1105 } |
1106 | |
1107 result[it->first.Format()] = value; | |
1108 } | |
0 | 1109 } |
1110 } | |
176 | 1111 |
1112 | |
788 | 1113 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level) |
176 | 1114 { |
1115 char uid[100]; | |
1116 | |
1117 switch (level) | |
1118 { | |
788 | 1119 case ResourceType_Patient: |
311 | 1120 // The "PatientID" field is of type LO (Long String), 64 |
1121 // Bytes Maximum. An UUID is of length 36, thus it can be used | |
1122 // as a random PatientID. | |
2172
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GenerateUuid() not available in sandboxed environments
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1123 return SystemToolbox::GenerateUuid(); |
306
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1124 |
788 | 1125 case ResourceType_Instance: |
302
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diff
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|
1126 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT); |
176 | 1127 |
788 | 1128 case ResourceType_Series: |
302
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1129 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT); |
176 | 1130 |
788 | 1131 case ResourceType_Study: |
302
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1132 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT); |
176 | 1133 |
302
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1134 default: |
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|
1135 throw OrthancException(ErrorCode_ParameterOutOfRange); |
176 | 1136 } |
1137 } | |
1138 | |
291
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1139 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
1004
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diff
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|
1140 DcmDataset& dataSet) |
291
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1141 { |
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1142 // Determine the transfer syntax which shall be used to write the |
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1143 // information to the file. We always switch to the Little Endian |
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1144 // syntax, with explicit length. |
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1145 |
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1146 // http://support.dcmtk.org/docs/dcxfer_8h-source.html |
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1147 |
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1148 |
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1149 /** |
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1150 * Note that up to Orthanc 0.7.1 (inclusive), the |
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1151 * "EXS_LittleEndianExplicit" was always used to save the DICOM |
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1152 * dataset into memory. We now keep the original transfer syntax |
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1153 * (if available). |
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1154 **/ |
1004
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DicomInstanceToStore
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991
diff
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|
1155 E_TransferSyntax xfer = dataSet.getOriginalXfer(); |
661
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diff
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|
1156 if (xfer == EXS_Unknown) |
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1157 { |
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1158 // No information about the original transfer syntax: This is |
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1159 // most probably a DICOM dataset that was read from memory. |
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1160 xfer = EXS_LittleEndianExplicit; |
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1161 } |
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1162 |
291
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1163 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength; |
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1164 |
661
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|
1165 // Create the meta-header information |
1004
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DicomInstanceToStore
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991
diff
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|
1166 DcmFileFormat ff(&dataSet); |
661
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|
1167 ff.validateMetaInfo(xfer); |
1316
1c8dfedefefe
Fix anonymization generating non-portable DICOM files
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1307
diff
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|
1168 ff.removeInvalidGroups(); |
291
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1169 |
661
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diff
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|
1170 // Create a memory buffer with the proper size |
1876
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|
1171 { |
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|
1172 const uint32_t estimatedSize = ff.calcElementLength(xfer, encodingType); // (*) |
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|
1173 buffer.resize(estimatedSize); |
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|
1174 } |
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|
1175 |
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diff
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|
1176 DcmOutputBufferStream ob(&buffer[0], buffer.size()); |
291
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1177 |
661
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|
1178 // Fill the memory buffer with the meta-header and the dataset |
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|
1179 ff.transferInit(); |
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|
1180 OFCondition c = ff.write(ob, xfer, encodingType, NULL, |
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|
1181 /*opt_groupLength*/ EGL_recalcGL, |
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|
1182 /*opt_paddingType*/ EPD_withoutPadding); |
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1183 ff.transferEnd(); |
291
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1184 |
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1185 if (c.good()) |
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1186 { |
1876
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1187 // The DICOM file is successfully written, truncate the target |
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|
1188 // buffer if its size was overestimated by (*) |
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|
1189 ob.flush(); |
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1190 |
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|
1191 size_t effectiveSize = static_cast<size_t>(ob.tell()); |
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1192 if (effectiveSize < buffer.size()) |
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1193 { |
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|
1194 buffer.resize(effectiveSize); |
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1195 } |
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1196 |
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1197 return true; |
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1198 } |
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1199 else |
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1200 { |
1876
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1201 // Error |
291
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1202 buffer.clear(); |
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1203 return false; |
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1204 } |
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1205 } |
1360 | 1206 |
1207 | |
2006
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diff
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|
1208 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag) |
1360 | 1209 { |
1210 DcmTag t(tag.GetGroup(), tag.GetElement()); | |
2006
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1211 return Convert(t.getEVR()); |
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1212 } |
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1213 |
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|
1214 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr) |
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1215 { |
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|
1216 switch (vr) |
1417
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1217 { |
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|
1218 case EVR_AE: |
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1219 return ValueRepresentation_ApplicationEntity; |
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1220 |
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1221 case EVR_AS: |
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1222 return ValueRepresentation_AgeString; |
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1223 |
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1224 case EVR_AT: |
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diff
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1225 return ValueRepresentation_AttributeTag; |
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diff
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1226 |
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diff
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|
1227 case EVR_CS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1228 return ValueRepresentation_CodeString; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1229 |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1230 case EVR_DA: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1231 return ValueRepresentation_Date; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1232 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1233 case EVR_DS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1234 return ValueRepresentation_DecimalString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1235 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1236 case EVR_DT: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1237 return ValueRepresentation_DateTime; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1238 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1239 case EVR_FL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1240 return ValueRepresentation_FloatingPointSingle; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1241 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1242 case EVR_FD: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1243 return ValueRepresentation_FloatingPointDouble; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1244 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1245 case EVR_IS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1246 return ValueRepresentation_IntegerString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1247 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1248 case EVR_LO: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1249 return ValueRepresentation_LongString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1250 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1251 case EVR_LT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1252 return ValueRepresentation_LongText; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1253 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1254 case EVR_OB: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1255 return ValueRepresentation_OtherByte; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1256 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1257 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1258 /*case EVR_OD: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1259 return ValueRepresentation_OtherDouble;*/ |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1260 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1261 case EVR_OF: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1262 return ValueRepresentation_OtherFloat; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1263 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1264 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1265 /*case EVR_OL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1266 return ValueRepresentation_OtherLong;*/ |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1267 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1268 case EVR_OW: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1269 return ValueRepresentation_OtherWord; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1270 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1271 case EVR_PN: |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1272 return ValueRepresentation_PersonName; |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1273 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1274 case EVR_SH: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1275 return ValueRepresentation_ShortString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1276 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1277 case EVR_SL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1278 return ValueRepresentation_SignedLong; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1279 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1280 case EVR_SQ: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1281 return ValueRepresentation_Sequence; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1282 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1283 case EVR_SS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1284 return ValueRepresentation_SignedShort; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1285 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1286 case EVR_ST: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1287 return ValueRepresentation_ShortText; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1288 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1289 case EVR_TM: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1290 return ValueRepresentation_Time; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1291 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1292 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1293 /*case EVR_UC: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1294 return ValueRepresentation_UnlimitedCharacters;*/ |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1295 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1296 case EVR_UI: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1297 return ValueRepresentation_UniqueIdentifier; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1298 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1299 case EVR_UL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1300 return ValueRepresentation_UnsignedLong; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1301 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1302 case EVR_UN: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1303 return ValueRepresentation_Unknown; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1304 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1305 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1306 /*case EVR_UR: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1307 return ValueRepresentation_UniversalResource;*/ |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1308 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1309 case EVR_US: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1310 return ValueRepresentation_UnsignedShort; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1311 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1312 case EVR_UT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1313 return ValueRepresentation_UnlimitedText; |
1792 | 1314 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1315 default: |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1316 return ValueRepresentation_NotSupported; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1317 } |
1360 | 1318 } |
1319 | |
1689 | 1320 |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1321 static bool IsBinaryTag(const DcmTag& key) |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1322 { |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1323 return (key.isUnknownVR() || |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1324 key.getEVR() == EVR_OB || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1325 key.getEVR() == EVR_OF || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1326 key.getEVR() == EVR_OW || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1327 key.getEVR() == EVR_UN || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1328 key.getEVR() == EVR_ox); |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1329 } |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1330 |
1689 | 1331 |
1332 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag) | |
1333 { | |
1334 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1335 | |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1336 if (tag.IsPrivate() || |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1337 IsBinaryTag(key)) |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1338 { |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1339 return new DcmOtherByteOtherWord(key); |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1340 } |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1341 |
1689 | 1342 switch (key.getEVR()) |
1343 { | |
1344 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1345 | |
1346 /** | |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1347 * Binary types, handled above |
1689 | 1348 **/ |
1349 | |
1350 case EVR_OB: // other byte | |
1351 case EVR_OF: // other float | |
1352 case EVR_OW: // other word | |
1353 case EVR_UN: // unknown value representation | |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1354 case EVR_ox: // OB or OW depending on context |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1355 throw OrthancException(ErrorCode_InternalError); |
1689 | 1356 |
1357 | |
1358 /** | |
1359 * String types. | |
1360 * http://support.dcmtk.org/docs/classDcmByteString.html | |
1361 **/ | |
1362 | |
1363 case EVR_AS: // age string | |
1364 return new DcmAgeString(key); | |
1365 | |
1366 case EVR_AE: // application entity title | |
1367 return new DcmApplicationEntity(key); | |
1368 | |
1369 case EVR_CS: // code string | |
1370 return new DcmCodeString(key); | |
1371 | |
1372 case EVR_DA: // date string | |
1373 return new DcmDate(key); | |
1374 | |
1375 case EVR_DT: // date time string | |
1376 return new DcmDateTime(key); | |
1377 | |
1378 case EVR_DS: // decimal string | |
1379 return new DcmDecimalString(key); | |
1380 | |
1381 case EVR_IS: // integer string | |
1382 return new DcmIntegerString(key); | |
1383 | |
1384 case EVR_TM: // time string | |
1385 return new DcmTime(key); | |
1386 | |
1387 case EVR_UI: // unique identifier | |
1388 return new DcmUniqueIdentifier(key); | |
1389 | |
1390 case EVR_ST: // short text | |
1391 return new DcmShortText(key); | |
1392 | |
1393 case EVR_LO: // long string | |
1394 return new DcmLongString(key); | |
1395 | |
1396 case EVR_LT: // long text | |
1397 return new DcmLongText(key); | |
1398 | |
1399 case EVR_UT: // unlimited text | |
1400 return new DcmUnlimitedText(key); | |
1401 | |
1402 case EVR_SH: // short string | |
1403 return new DcmShortString(key); | |
1404 | |
1405 case EVR_PN: // person name | |
1406 return new DcmPersonName(key); | |
1407 | |
1408 | |
1409 /** | |
1410 * Numerical types | |
1411 **/ | |
1412 | |
1413 case EVR_SL: // signed long | |
1414 return new DcmSignedLong(key); | |
1415 | |
1416 case EVR_SS: // signed short | |
1417 return new DcmSignedShort(key); | |
1418 | |
1419 case EVR_UL: // unsigned long | |
1420 return new DcmUnsignedLong(key); | |
1421 | |
1422 case EVR_US: // unsigned short | |
1423 return new DcmUnsignedShort(key); | |
1424 | |
1425 case EVR_FL: // float single-precision | |
1426 return new DcmFloatingPointSingle(key); | |
1427 | |
1428 case EVR_FD: // float double-precision | |
1429 return new DcmFloatingPointDouble(key); | |
1430 | |
1431 | |
1432 /** | |
1433 * Sequence types, should never occur at this point. | |
1434 **/ | |
1435 | |
1436 case EVR_SQ: // sequence of items | |
1437 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1438 | |
1439 | |
1440 /** | |
1739
df331354cea2
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Sebastien Jodogne <s.jodogne@gmail.com>
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1738
diff
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|
1441 * TODO |
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|
1442 **/ |
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1443 |
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1444 case EVR_AT: // attribute tag |
df331354cea2
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1445 throw OrthancException(ErrorCode_NotImplemented); |
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1446 |
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|
1447 |
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|
1448 /** |
1689 | 1449 * Internal to DCMTK. |
1450 **/ | |
1451 | |
1452 case EVR_xs: // SS or US depending on context | |
1453 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1454 case EVR_na: // na="not applicable", for data which has no VR | |
1455 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1456 case EVR_item: // used internally for items | |
1457 case EVR_metainfo: // used internally for meta info datasets | |
1458 case EVR_dataset: // used internally for datasets | |
1459 case EVR_fileFormat: // used internally for DICOM files | |
1460 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1461 case EVR_dirRecord: // used internally for DICOMDIR records | |
1462 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1463 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1464 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1465 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1466 case EVR_OverlayData: // used internally for overlay data | |
1467 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1468 default: | |
1469 break; | |
1470 } | |
1471 | |
1472 throw OrthancException(ErrorCode_InternalError); | |
1473 } | |
1474 | |
1475 | |
1476 | |
1477 void FromDcmtkBridge::FillElementWithString(DcmElement& element, | |
1478 const DicomTag& tag, | |
1695 | 1479 const std::string& utf8Value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1480 bool decodeDataUriScheme, |
1695 | 1481 Encoding dicomEncoding) |
1689 | 1482 { |
1483 std::string binary; | |
1695 | 1484 const std::string* decoded = &utf8Value; |
1689 | 1485 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1486 if (decodeDataUriScheme && |
1695 | 1487 boost::starts_with(utf8Value, "data:application/octet-stream;base64,")) |
1689 | 1488 { |
1489 std::string mime; | |
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1490 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1491 { |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1492 throw OrthancException(ErrorCode_BadFileFormat); |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1493 } |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1494 |
1695 | 1495 decoded = &binary; |
1496 } | |
1497 else if (dicomEncoding != Encoding_Utf8) | |
1498 { | |
1499 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding); | |
1689 | 1500 decoded = &binary; |
1501 } | |
1502 | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1503 DcmTag key(tag.GetGroup(), tag.GetElement()); |
1689 | 1504 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1505 if (tag.IsPrivate() || |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1506 IsBinaryTag(key)) |
1689 | 1507 { |
1508 if (element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good()) | |
1509 { | |
1510 return; | |
1511 } | |
1512 else | |
1513 { | |
1514 throw OrthancException(ErrorCode_InternalError); | |
1515 } | |
1516 } | |
1517 | |
1518 bool ok = false; | |
1519 | |
1520 try | |
1521 { | |
1522 switch (key.getEVR()) | |
1523 { | |
1524 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1525 | |
1526 /** | |
1527 * TODO. | |
1528 **/ | |
1529 | |
1530 case EVR_OB: // other byte | |
1531 case EVR_OF: // other float | |
1532 case EVR_OW: // other word | |
1533 case EVR_AT: // attribute tag | |
1534 throw OrthancException(ErrorCode_NotImplemented); | |
1535 | |
1536 case EVR_UN: // unknown value representation | |
1537 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1538 | |
1539 | |
1540 /** | |
1541 * String types. | |
1542 **/ | |
1543 | |
1544 case EVR_DS: // decimal string | |
1545 case EVR_IS: // integer string | |
1546 case EVR_AS: // age string | |
1547 case EVR_DA: // date string | |
1548 case EVR_DT: // date time string | |
1549 case EVR_TM: // time string | |
1550 case EVR_AE: // application entity title | |
1551 case EVR_CS: // code string | |
1552 case EVR_SH: // short string | |
1553 case EVR_LO: // long string | |
1554 case EVR_ST: // short text | |
1555 case EVR_LT: // long text | |
1556 case EVR_UT: // unlimited text | |
1557 case EVR_PN: // person name | |
1558 case EVR_UI: // unique identifier | |
1559 { | |
1560 ok = element.putString(decoded->c_str()).good(); | |
1561 break; | |
1562 } | |
1563 | |
1564 | |
1565 /** | |
1566 * Numerical types | |
1567 **/ | |
1568 | |
1569 case EVR_SL: // signed long | |
1570 { | |
1571 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good(); | |
1572 break; | |
1573 } | |
1574 | |
1575 case EVR_SS: // signed short | |
1576 { | |
1577 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good(); | |
1578 break; | |
1579 } | |
1580 | |
1581 case EVR_UL: // unsigned long | |
1582 { | |
1583 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good(); | |
1584 break; | |
1585 } | |
1586 | |
1587 case EVR_US: // unsigned short | |
1588 { | |
1589 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good(); | |
1590 break; | |
1591 } | |
1592 | |
1593 case EVR_FL: // float single-precision | |
1594 { | |
1595 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good(); | |
1596 break; | |
1597 } | |
1598 | |
1599 case EVR_FD: // float double-precision | |
1600 { | |
1601 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good(); | |
1602 break; | |
1603 } | |
1604 | |
1605 | |
1606 /** | |
1607 * Sequence types, should never occur at this point. | |
1608 **/ | |
1609 | |
1610 case EVR_SQ: // sequence of items | |
1611 { | |
1612 ok = false; | |
1613 break; | |
1614 } | |
1615 | |
1616 | |
1617 /** | |
1618 * Internal to DCMTK. | |
1619 **/ | |
1620 | |
1621 case EVR_ox: // OB or OW depending on context | |
1622 case EVR_xs: // SS or US depending on context | |
1623 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1624 case EVR_na: // na="not applicable", for data which has no VR | |
1625 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1626 case EVR_item: // used internally for items | |
1627 case EVR_metainfo: // used internally for meta info datasets | |
1628 case EVR_dataset: // used internally for datasets | |
1629 case EVR_fileFormat: // used internally for DICOM files | |
1630 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1631 case EVR_dirRecord: // used internally for DICOMDIR records | |
1632 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1633 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1634 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1635 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1636 case EVR_OverlayData: // used internally for overlay data | |
1637 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1638 default: | |
1639 break; | |
1640 } | |
1641 } | |
1642 catch (boost::bad_lexical_cast&) | |
1643 { | |
1644 ok = false; | |
1645 } | |
1646 | |
1647 if (!ok) | |
1648 { | |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1649 LOG(ERROR) << "While creating a DICOM instance, tag (" << tag.Format() |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1650 << ") has out-of-range value: \"" << *decoded << "\""; |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1651 throw OrthancException(ErrorCode_BadFileFormat); |
1689 | 1652 } |
1653 } | |
1654 | |
1655 | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1656 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag, |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1657 const Json::Value& value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1658 bool decodeDataUriScheme, |
1695 | 1659 Encoding dicomEncoding) |
1689 | 1660 { |
1661 std::auto_ptr<DcmElement> element; | |
1662 | |
1690 | 1663 switch (value.type()) |
1689 | 1664 { |
1690 | 1665 case Json::stringValue: |
1666 element.reset(CreateElementForTag(tag)); | |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1667 FillElementWithString(*element, tag, value.asString(), decodeDataUriScheme, dicomEncoding); |
1690 | 1668 break; |
1669 | |
2216
9a8fab016145
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1670 case Json::nullValue: |
9a8fab016145
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1671 element.reset(CreateElementForTag(tag)); |
9a8fab016145
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1672 FillElementWithString(*element, tag, "", decodeDataUriScheme, dicomEncoding); |
9a8fab016145
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1673 break; |
9a8fab016145
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1674 |
1690 | 1675 case Json::arrayValue: |
1676 { | |
1677 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1678 if (key.getEVR() != EVR_SQ) | |
1679 { | |
1680 throw OrthancException(ErrorCode_BadParameterType); | |
1681 } | |
1682 | |
1683 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key, value.size()); | |
1684 element.reset(sequence); | |
1685 | |
1686 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++) | |
1687 { | |
1688 std::auto_ptr<DcmItem> item(new DcmItem); | |
1689 | |
1690 Json::Value::Members members = value[i].getMemberNames(); | |
1691 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++) | |
1692 { | |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1693 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding)); |
1690 | 1694 } |
1695 | |
1696 sequence->append(item.release()); | |
1697 } | |
1698 | |
1699 break; | |
1700 } | |
1701 | |
1702 default: | |
1703 throw OrthancException(ErrorCode_BadParameterType); | |
1689 | 1704 } |
1705 | |
1706 return element.release(); | |
1707 } | |
1765
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1708 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1709 |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1710 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
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|
1711 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1712 DcmElement *element = NULL; |
1927
b60f27664b8f
simplification in FromDcmtkBridge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1924
diff
changeset
|
1713 if (!dataset.findAndGetElement(DCM_PixelData, element).good()) |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1714 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1715 throw OrthancException(ErrorCode_BadFileFormat); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1716 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1717 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1718 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1719 DcmPixelSequence* pixelSequence = NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1720 if (!pixelData.getEncapsulatedRepresentation |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1721 (dataset.getOriginalXfer(), NULL, pixelSequence).good()) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1722 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1723 return NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1724 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1725 else |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1726 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1727 return pixelSequence; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1728 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1729 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1730 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1731 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1732 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1733 Encoding defaultEncoding) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1734 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1735 if (json.type() != Json::objectValue) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1736 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1737 throw OrthancException(ErrorCode_BadParameterType); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1738 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1739 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1740 Encoding encoding = defaultEncoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1741 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1742 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1743 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1744 // Look for SpecificCharacterSet (0008,0005) in the JSON file |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1745 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1746 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1747 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1748 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1749 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1750 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1751 if (value.type() != Json::stringValue || |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1752 (value.asString().length() != 0 && |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1753 !GetDicomEncoding(encoding, value.asCString()))) |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1754 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1755 LOG(ERROR) << "Unknown encoding while creating DICOM from JSON: " << value; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1756 throw OrthancException(ErrorCode_BadRequest); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1757 } |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1758 |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1759 if (value.asString().length() == 0) |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1760 { |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1761 return defaultEncoding; |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1762 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1763 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1764 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1765 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1766 return encoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1767 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1768 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1769 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1770 static void SetString(DcmDataset& target, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1771 const DcmTag& tag, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1772 const std::string& value) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1773 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1774 if (!target.putAndInsertString(tag, value.c_str()).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1775 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1776 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1777 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1778 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1779 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1780 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1781 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1782 bool generateIdentifiers, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1783 bool decodeDataUriScheme, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1784 Encoding defaultEncoding) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1785 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1786 std::auto_ptr<DcmDataset> result(new DcmDataset); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1787 Encoding encoding = ExtractEncoding(json, defaultEncoding); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1788 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1789 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1790 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1791 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1792 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1793 bool hasPatientId = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1794 bool hasStudyInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1795 bool hasSeriesInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1796 bool hasSopInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1797 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1798 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1799 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1800 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1801 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1802 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1803 if (tag == DICOM_TAG_PATIENT_ID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1804 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1805 hasPatientId = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1806 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1807 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1808 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1809 hasStudyInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1810 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1811 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1812 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1813 hasSeriesInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1814 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1815 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1816 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1817 hasSopInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1818 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1819 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1820 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1821 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1822 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1823 const DcmTagKey& tag = element->getTag(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1824 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1825 result->findAndDeleteElement(tag); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1826 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1827 DcmElement* tmp = element.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1828 if (!result->insert(tmp, false, false).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1829 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1830 delete tmp; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1831 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1832 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1833 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1834 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1835 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1836 if (!hasPatientId && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1837 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1838 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1839 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1840 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1841 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1842 if (!hasStudyInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1843 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1844 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1845 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1846 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1847 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1848 if (!hasSeriesInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1849 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1850 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1851 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1852 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1853 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1854 if (!hasSopInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1855 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1856 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1857 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1858 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1859 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1860 return result.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1861 } |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1862 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1863 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1864 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer, |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1865 size_t size) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1866 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1867 DcmInputBufferStream is; |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1868 if (size > 0) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1869 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1870 is.setBuffer(buffer, size); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1871 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1872 is.setEos(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1873 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1874 std::auto_ptr<DcmFileFormat> result(new DcmFileFormat); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1875 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1876 result->transferInit(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1877 if (!result->read(is).good()) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1878 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1879 throw OrthancException(ErrorCode_BadFileFormat); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1880 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1881 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1882 result->loadAllDataIntoMemory(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1883 result->transferEnd(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1884 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1885 return result.release(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1886 } |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1887 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1888 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1889 void FromDcmtkBridge::FromJson(DicomMap& target, |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1890 const Json::Value& source) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1891 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1892 if (source.type() != Json::objectValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1893 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1894 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1895 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1896 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1897 target.Clear(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1898 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1899 Json::Value::Members members = source.getMemberNames(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1900 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1901 for (size_t i = 0; i < members.size(); i++) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1902 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1903 const Json::Value& value = source[members[i]]; |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1904 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1905 if (value.type() != Json::stringValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1906 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1907 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1908 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1909 |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1910 target.SetValue(ParseTag(members[i]), value.asString(), false); |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1911 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1912 } |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1913 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1914 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1915 void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset, |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1916 Encoding source, |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1917 Encoding target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1918 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1919 // Recursive exploration of a dataset to change the encoding of |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1920 // each string-like element |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1921 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1922 if (source == target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1923 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1924 return; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1925 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1926 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1927 for (unsigned long i = 0; i < dataset.card(); i++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1928 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1929 DcmElement* element = dataset.getElement(i); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1930 if (element) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1931 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1932 if (element->isLeaf()) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1933 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1934 char *c = NULL; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1935 if (element->isaString() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1936 element->getString(c).good() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1937 c != NULL) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1938 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1939 std::string a = Toolbox::ConvertToUtf8(c, source); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1940 std::string b = Toolbox::ConvertFromUtf8(a, target); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1941 element->putString(b.c_str()); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1942 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1943 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1944 else |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1945 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1946 // "All subclasses of DcmElement except for DcmSequenceOfItems |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1947 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1948 // etc. are not." The following dynamic_cast is thus OK. |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1949 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1950 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1951 for (unsigned long j = 0; j < sequence.card(); j++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1952 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1953 ChangeStringEncoding(*sequence.getItem(j), source, target); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1954 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1955 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1956 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1957 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
1958 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1959 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1960 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1961 bool FromDcmtkBridge::LookupTransferSyntax(std::string& result, |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1962 DcmFileFormat& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1963 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1964 const char* value = NULL; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1965 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1966 if (dicom.getMetaInfo() != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1967 dicom.getMetaInfo()->findAndGetString(DCM_TransferSyntaxUID, value).good() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1968 value != NULL) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1969 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1970 result.assign(value); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1971 return true; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1972 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1973 else |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1974 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1975 return false; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1976 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1977 } |
0 | 1978 } |