Mercurial > hg > orthanc
annotate Core/DicomParsing/ParsedDicomFile.cpp @ 4011:914b15dedae3
fix for non private sequence tags in C-Find
| author | Alain Mazy <alain@mazy.be> |
|---|---|
| date | Mon, 08 Jun 2020 16:04:29 +0200 |
| parents | 884b55ce01f6 |
| children | 1e9f6d706237 |
| rev | line source |
|---|---|
| 790 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
|
1288
6e7e5ed91c2d
upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
4 * Department, University Hospital of Liege, Belgium |
|
3640
94f4a18a79cc
upgrade to year 2020
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3577
diff
changeset
|
5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 790 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 | |
| 35 /*========================================================================= | |
| 36 | |
| 37 This file is based on portions of the following project: | |
| 38 | |
| 39 Program: GDCM (Grassroots DICOM). A DICOM library | |
| 40 Module: http://gdcm.sourceforge.net/Copyright.html | |
| 41 | |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
42 Copyright (c) 2006-2011 Mathieu Malaterre |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
43 Copyright (c) 1993-2005 CREATIS |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
44 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image) |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
45 All rights reserved. |
| 790 | 46 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
47 Redistribution and use in source and binary forms, with or without |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
48 modification, are permitted provided that the following conditions are met: |
| 790 | 49 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
50 * Redistributions of source code must retain the above copyright notice, |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
51 this list of conditions and the following disclaimer. |
| 790 | 52 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
53 * Redistributions in binary form must reproduce the above copyright notice, |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
54 this list of conditions and the following disclaimer in the documentation |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
55 and/or other materials provided with the distribution. |
| 790 | 56 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
57 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
58 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
59 endorse or promote products derived from this software without specific |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
60 prior written permission. |
| 790 | 61 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
62 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS'' |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
63 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
64 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
65 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
66 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
67 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
68 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
69 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
70 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
71 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
| 790 | 72 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
73 =========================================================================*/ |
| 790 | 74 |
| 75 | |
|
2382
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
76 #include "../PrecompiledHeaders.h" |
|
824
a811bdf8b8eb
precompiled headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
817
diff
changeset
|
77 |
| 790 | 78 #ifndef NOMINMAX |
| 79 #define NOMINMAX | |
| 80 #endif | |
| 81 | |
| 82 #include "ParsedDicomFile.h" | |
| 83 | |
| 84 #include "FromDcmtkBridge.h" | |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
85 #include "Internals/DicomFrameIndex.h" |
| 790 | 86 #include "ToDcmtkBridge.h" |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
87 |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
88 #include "../Images/PamReader.h" |
|
2382
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
89 #include "../Logging.h" |
|
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
90 #include "../OrthancException.h" |
|
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
91 #include "../Toolbox.h" |
|
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
92 |
|
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
93 #if ORTHANC_SANDBOXED == 0 |
|
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
94 # include "../SystemToolbox.h" |
|
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
95 #endif |
| 790 | 96 |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
97 #if ORTHANC_ENABLE_JPEG == 1 |
|
2382
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
98 # include "../Images/JpegReader.h" |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
99 #endif |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
100 |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
101 #if ORTHANC_ENABLE_PNG == 1 |
|
2382
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
102 # include "../Images/PngReader.h" |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
103 #endif |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
104 |
| 790 | 105 #include <list> |
| 106 #include <limits> | |
| 107 | |
| 108 #include <boost/lexical_cast.hpp> | |
| 109 | |
| 110 #include <dcmtk/dcmdata/dcchrstr.h> | |
| 111 #include <dcmtk/dcmdata/dcdicent.h> | |
| 112 #include <dcmtk/dcmdata/dcdict.h> | |
| 113 #include <dcmtk/dcmdata/dcfilefo.h> | |
| 114 #include <dcmtk/dcmdata/dcuid.h> | |
| 115 #include <dcmtk/dcmdata/dcmetinf.h> | |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
116 #include <dcmtk/dcmdata/dcdeftag.h> |
| 790 | 117 |
| 118 #include <dcmtk/dcmdata/dcvrae.h> | |
| 119 #include <dcmtk/dcmdata/dcvras.h> | |
| 120 #include <dcmtk/dcmdata/dcvrcs.h> | |
| 121 #include <dcmtk/dcmdata/dcvrda.h> | |
| 122 #include <dcmtk/dcmdata/dcvrds.h> | |
| 123 #include <dcmtk/dcmdata/dcvrdt.h> | |
| 124 #include <dcmtk/dcmdata/dcvrfd.h> | |
| 125 #include <dcmtk/dcmdata/dcvrfl.h> | |
| 126 #include <dcmtk/dcmdata/dcvris.h> | |
| 127 #include <dcmtk/dcmdata/dcvrlo.h> | |
| 128 #include <dcmtk/dcmdata/dcvrlt.h> | |
| 129 #include <dcmtk/dcmdata/dcvrpn.h> | |
| 130 #include <dcmtk/dcmdata/dcvrsh.h> | |
| 131 #include <dcmtk/dcmdata/dcvrsl.h> | |
| 132 #include <dcmtk/dcmdata/dcvrss.h> | |
| 133 #include <dcmtk/dcmdata/dcvrst.h> | |
| 134 #include <dcmtk/dcmdata/dcvrtm.h> | |
| 135 #include <dcmtk/dcmdata/dcvrui.h> | |
| 136 #include <dcmtk/dcmdata/dcvrul.h> | |
| 137 #include <dcmtk/dcmdata/dcvrus.h> | |
| 138 #include <dcmtk/dcmdata/dcvrut.h> | |
| 139 #include <dcmtk/dcmdata/dcpixel.h> | |
| 140 #include <dcmtk/dcmdata/dcpixseq.h> | |
| 141 #include <dcmtk/dcmdata/dcpxitem.h> | |
| 142 | |
| 143 | |
| 144 #include <boost/math/special_functions/round.hpp> | |
| 145 #include <dcmtk/dcmdata/dcostrmb.h> | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
146 #include <boost/algorithm/string/predicate.hpp> |
| 790 | 147 |
| 148 | |
|
1945
76ff6eecf07f
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1941
diff
changeset
|
149 #if DCMTK_VERSION_NUMBER <= 360 |
|
76ff6eecf07f
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1941
diff
changeset
|
150 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax |
|
76ff6eecf07f
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1941
diff
changeset
|
151 #endif |
|
76ff6eecf07f
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1941
diff
changeset
|
152 |
|
76ff6eecf07f
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1941
diff
changeset
|
153 |
| 790 | 154 |
| 155 namespace Orthanc | |
| 156 { | |
| 794 | 157 struct ParsedDicomFile::PImpl |
| 158 { | |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
159 std::unique_ptr<DcmFileFormat> file_; |
|
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
160 std::unique_ptr<DicomFrameIndex> frameIndex_; |
| 794 | 161 }; |
| 162 | |
| 163 | |
|
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
164 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
165 static void ParseTagAndGroup(DcmTagKey& key, |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
166 const std::string& tag) |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
167 { |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
168 DicomTag t = FromDcmtkBridge::ParseTag(tag); |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
169 key = DcmTagKey(t.GetGroup(), t.GetElement()); |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
170 } |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
171 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
172 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
173 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData, |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
174 E_TransferSyntax transferSyntax) |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
175 { |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
176 DcmPixelSequence* pixelSequence = NULL; |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
177 if (pixelData.getEncapsulatedRepresentation |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
178 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
179 { |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
180 return pixelSequence->card(); |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
181 } |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
182 else |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
183 { |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
184 return 1; |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
185 } |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
186 } |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
187 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
188 |
| 790 | 189 static void SendPathValueForDictionary(RestApiOutput& output, |
| 190 DcmItem& dicom) | |
| 191 { | |
| 192 Json::Value v = Json::arrayValue; | |
| 193 | |
| 194 for (unsigned long i = 0; i < dicom.card(); i++) | |
| 195 { | |
| 196 DcmElement* element = dicom.getElement(i); | |
| 197 if (element) | |
| 198 { | |
| 199 char buf[16]; | |
| 200 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag()); | |
| 201 v.append(buf); | |
| 202 } | |
| 203 } | |
| 204 | |
| 205 output.AnswerJson(v); | |
| 206 } | |
| 207 | |
| 208 | |
| 209 static void SendSequence(RestApiOutput& output, | |
| 210 DcmSequenceOfItems& sequence) | |
| 211 { | |
| 212 // This element is a sequence | |
| 213 Json::Value v = Json::arrayValue; | |
| 214 | |
| 215 for (unsigned long i = 0; i < sequence.card(); i++) | |
| 216 { | |
| 217 v.append(boost::lexical_cast<std::string>(i)); | |
| 218 } | |
| 219 | |
| 220 output.AnswerJson(v); | |
| 221 } | |
| 222 | |
| 223 | |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
224 namespace |
| 790 | 225 { |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
226 class DicomFieldStream : public IHttpStreamAnswer |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
227 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
228 private: |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
229 DcmElement& element_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
230 uint32_t length_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
231 uint32_t offset_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
232 std::string chunk_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
233 size_t chunkSize_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
234 |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
235 public: |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
236 DicomFieldStream(DcmElement& element, |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
237 E_TransferSyntax transferSyntax) : |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
238 element_(element), |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
239 length_(element.getLength(transferSyntax)), |
| 1616 | 240 offset_(0), |
| 241 chunkSize_(0) | |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
242 { |
| 1521 | 243 static const size_t CHUNK_SIZE = 64 * 1024; // Use chunks of max 64KB |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
244 chunk_.resize(CHUNK_SIZE); |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
245 } |
| 790 | 246 |
|
1523
c388502a066d
testing FilesystemHttpSender
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1521
diff
changeset
|
247 virtual HttpCompression SetupHttpCompression(bool /*gzipAllowed*/, |
|
c388502a066d
testing FilesystemHttpSender
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1521
diff
changeset
|
248 bool /*deflateAllowed*/) |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
249 ORTHANC_OVERRIDE |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
250 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
251 // No support for compression |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
252 return HttpCompression_None; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
253 } |
| 790 | 254 |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
255 virtual bool HasContentFilename(std::string& filename) ORTHANC_OVERRIDE |
| 790 | 256 { |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
257 return false; |
| 790 | 258 } |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
259 |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
260 virtual std::string GetContentType() ORTHANC_OVERRIDE |
| 790 | 261 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
262 return EnumerationToString(MimeType_Binary); |
| 790 | 263 } |
| 264 | |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
265 virtual uint64_t GetContentLength() ORTHANC_OVERRIDE |
| 790 | 266 { |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
267 return length_; |
| 790 | 268 } |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
269 |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
270 virtual bool ReadNextChunk() ORTHANC_OVERRIDE |
| 790 | 271 { |
| 1520 | 272 assert(offset_ <= length_); |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
273 |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
274 if (offset_ == length_) |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
275 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
276 return false; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
277 } |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
278 else |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
279 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
280 if (length_ - offset_ < chunk_.size()) |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
281 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
282 chunkSize_ = length_ - offset_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
283 } |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
284 else |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
285 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
286 chunkSize_ = chunk_.size(); |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
287 } |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
288 |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
289 OFCondition cond = element_.getPartialValue(&chunk_[0], offset_, chunkSize_); |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
290 |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
291 offset_ += chunkSize_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
292 |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
293 if (!cond.good()) |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
294 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
295 throw OrthancException(ErrorCode_InternalError, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
296 "Error while sending a DICOM field: " + |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
297 std::string(cond.text())); |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
298 } |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
299 |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
300 return true; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
301 } |
| 790 | 302 } |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
303 |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
304 virtual const char *GetChunkContent() ORTHANC_OVERRIDE |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
305 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
306 return chunk_.c_str(); |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
307 } |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
308 |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
309 virtual size_t GetChunkSize() ORTHANC_OVERRIDE |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
310 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
311 return chunkSize_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
312 } |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
313 }; |
| 790 | 314 } |
| 315 | |
| 316 | |
| 317 static bool AnswerPixelData(RestApiOutput& output, | |
| 318 DcmItem& dicom, | |
| 319 E_TransferSyntax transferSyntax, | |
| 320 const std::string* blockUri) | |
| 321 { | |
| 322 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(), | |
| 323 DICOM_TAG_PIXEL_DATA.GetElement()); | |
| 324 | |
| 325 DcmElement *element = NULL; | |
| 326 if (!dicom.findAndGetElement(k, element).good() || | |
| 327 element == NULL) | |
| 328 { | |
| 329 return false; | |
| 330 } | |
| 331 | |
| 332 try | |
| 333 { | |
| 334 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); | |
| 335 if (blockUri == NULL) | |
| 336 { | |
|
1913
41e402cd7b3a
do not generate RC files for non-Windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1902
diff
changeset
|
337 // The user asks how many blocks are present in this pixel data |
| 790 | 338 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax); |
| 339 | |
| 340 Json::Value result(Json::arrayValue); | |
| 341 for (unsigned int i = 0; i < blocks; i++) | |
| 342 { | |
| 343 result.append(boost::lexical_cast<std::string>(i)); | |
| 344 } | |
| 345 | |
| 346 output.AnswerJson(result); | |
| 347 return true; | |
| 348 } | |
| 349 | |
| 350 | |
| 351 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri); | |
| 352 | |
| 353 if (block < GetPixelDataBlockCount(pixelData, transferSyntax)) | |
| 354 { | |
| 355 DcmPixelSequence* pixelSequence = NULL; | |
| 356 if (pixelData.getEncapsulatedRepresentation | |
| 357 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) | |
| 358 { | |
| 359 // This is the case for JPEG transfer syntaxes | |
| 360 if (block < pixelSequence->card()) | |
| 361 { | |
| 362 DcmPixelItem* pixelItem = NULL; | |
| 363 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem) | |
| 364 { | |
| 365 if (pixelItem->getLength() == 0) | |
| 366 { | |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
367 output.AnswerBuffer(NULL, 0, MimeType_Binary); |
| 790 | 368 return true; |
| 369 } | |
| 370 | |
| 371 Uint8* buffer = NULL; | |
| 372 if (pixelItem->getUint8Array(buffer).good() && buffer) | |
| 373 { | |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
374 output.AnswerBuffer(buffer, pixelItem->getLength(), MimeType_Binary); |
| 790 | 375 return true; |
| 376 } | |
| 377 } | |
| 378 } | |
| 379 } | |
| 380 else | |
| 381 { | |
| 382 // This is the case for raw, uncompressed image buffers | |
| 383 assert(*blockUri == "0"); | |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
384 DicomFieldStream stream(*element, transferSyntax); |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
385 output.AnswerStream(stream); |
| 790 | 386 } |
| 387 } | |
| 388 } | |
| 389 catch (boost::bad_lexical_cast&) | |
| 390 { | |
| 391 // The URI entered by the user is not a number | |
| 392 } | |
| 393 catch (std::bad_cast&) | |
| 394 { | |
| 395 // This should never happen | |
| 396 } | |
| 397 | |
| 398 return false; | |
| 399 } | |
| 400 | |
| 401 | |
| 402 static void SendPathValueForLeaf(RestApiOutput& output, | |
| 403 const std::string& tag, | |
| 404 DcmItem& dicom, | |
| 405 E_TransferSyntax transferSyntax) | |
| 406 { | |
| 407 DcmTagKey k; | |
| 408 ParseTagAndGroup(k, tag); | |
| 409 | |
| 410 DcmSequenceOfItems* sequence = NULL; | |
| 411 if (dicom.findAndGetSequence(k, sequence).good() && | |
| 412 sequence != NULL && | |
| 413 sequence->getVR() == EVR_SQ) | |
| 414 { | |
| 415 SendSequence(output, *sequence); | |
| 416 return; | |
| 417 } | |
| 418 | |
| 419 DcmElement* element = NULL; | |
| 420 if (dicom.findAndGetElement(k, element).good() && | |
| 421 element != NULL && | |
| 422 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags | |
| 423 element->getVR() != EVR_SQ) | |
| 424 { | |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
425 DicomFieldStream stream(*element, transferSyntax); |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
426 output.AnswerStream(stream); |
| 790 | 427 } |
| 428 } | |
|
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
429 #endif |
| 790 | 430 |
|
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
431 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
432 static inline uint16_t GetCharValue(char c) |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
433 { |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
434 if (c >= '0' && c <= '9') |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
435 return c - '0'; |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
436 else if (c >= 'a' && c <= 'f') |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
437 return c - 'a' + 10; |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
438 else if (c >= 'A' && c <= 'F') |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
439 return c - 'A' + 10; |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
440 else |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
441 return 0; |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
442 } |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
443 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
444 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
445 static inline uint16_t GetTagValue(const char* c) |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
446 { |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
447 return ((GetCharValue(c[0]) << 12) + |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
448 (GetCharValue(c[1]) << 8) + |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
449 (GetCharValue(c[2]) << 4) + |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
450 GetCharValue(c[3])); |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
451 } |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
452 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
453 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
454 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
| 790 | 455 void ParsedDicomFile::SendPathValue(RestApiOutput& output, |
| 456 const UriComponents& uri) | |
| 457 { | |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
458 DcmItem* dicom = GetDcmtkObject().getDataset(); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
459 E_TransferSyntax transferSyntax = GetDcmtkObject().getDataset()->getCurrentXfer(); |
| 790 | 460 |
| 461 // Special case: Accessing the pixel data | |
| 462 if (uri.size() == 1 || | |
| 463 uri.size() == 2) | |
| 464 { | |
| 465 DcmTagKey tag; | |
| 466 ParseTagAndGroup(tag, uri[0]); | |
| 467 | |
| 468 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() && | |
| 469 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement()) | |
| 470 { | |
| 471 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]); | |
| 472 return; | |
| 473 } | |
| 474 } | |
| 475 | |
| 476 // Go down in the tag hierarchy according to the URI | |
| 477 for (size_t pos = 0; pos < uri.size() / 2; pos++) | |
| 478 { | |
| 479 size_t index; | |
| 480 try | |
| 481 { | |
| 482 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]); | |
| 483 } | |
| 484 catch (boost::bad_lexical_cast&) | |
| 485 { | |
| 486 return; | |
| 487 } | |
| 488 | |
| 489 DcmTagKey k; | |
| 490 DcmItem *child = NULL; | |
| 491 ParseTagAndGroup(k, uri[2 * pos]); | |
| 492 if (!dicom->findAndGetSequenceItem(k, child, index).good() || | |
| 493 child == NULL) | |
| 494 { | |
| 495 return; | |
| 496 } | |
| 497 | |
| 498 dicom = child; | |
| 499 } | |
| 500 | |
| 501 // We have reached the end of the URI | |
| 502 if (uri.size() % 2 == 0) | |
| 503 { | |
| 504 SendPathValueForDictionary(output, *dicom); | |
| 505 } | |
| 506 else | |
| 507 { | |
| 508 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax); | |
| 509 } | |
| 510 } | |
|
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
511 #endif |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
512 |
| 790 | 513 |
| 514 void ParsedDicomFile::Remove(const DicomTag& tag) | |
| 515 { | |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
516 InvalidateCache(); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
517 |
| 790 | 518 DcmTagKey key(tag.GetGroup(), tag.GetElement()); |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
519 DcmElement* element = GetDcmtkObject().getDataset()->remove(key); |
| 790 | 520 if (element != NULL) |
| 521 { | |
| 522 delete element; | |
| 523 } | |
| 524 } | |
| 525 | |
| 526 | |
|
2310
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
527 void ParsedDicomFile::Clear(const DicomTag& tag, |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
528 bool onlyIfExists) |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
529 { |
|
2797
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
530 if (tag.GetElement() == 0x0000) |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
531 { |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
532 // Prevent manually modifying generic group length tags: This is |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
533 // handled by DCMTK serialization |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
534 return; |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
535 } |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
536 |
|
2310
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
537 InvalidateCache(); |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
538 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
539 DcmItem* dicom = GetDcmtkObject().getDataset(); |
|
2310
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
540 DcmTagKey key(tag.GetGroup(), tag.GetElement()); |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
541 |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
542 if (onlyIfExists && |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
543 !dicom->tagExists(key)) |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
544 { |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
545 // The tag is non-existing, do not clear it |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
546 } |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
547 else |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
548 { |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
549 if (!dicom->insertEmptyElement(key, OFTrue /* replace old value */).good()) |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
550 { |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
551 throw OrthancException(ErrorCode_InternalError); |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
552 } |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
553 } |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
554 } |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
555 |
| 790 | 556 |
|
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
557 void ParsedDicomFile::RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep) |
| 790 | 558 { |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
559 InvalidateCache(); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
560 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
561 DcmDataset& dataset = *GetDcmtkObject().getDataset(); |
|
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
562 |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
563 // Loop over the dataset to detect its private tags |
| 790 | 564 typedef std::list<DcmElement*> Tags; |
| 565 Tags privateTags; | |
| 566 | |
| 567 for (unsigned long i = 0; i < dataset.card(); i++) | |
| 568 { | |
| 569 DcmElement* element = dataset.getElement(i); | |
| 570 DcmTag tag(element->getTag()); | |
|
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
571 |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
572 // Is this a private tag? |
| 1694 | 573 if (tag.isPrivate()) |
| 790 | 574 { |
|
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
575 bool remove = true; |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
576 |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
577 // Check whether this private tag is to be kept |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
578 if (toKeep != NULL) |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
579 { |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
580 DicomTag tmp = FromDcmtkBridge::Convert(tag); |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
581 if (toKeep->find(tmp) != toKeep->end()) |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
582 { |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
583 remove = false; // Keep it |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
584 } |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
585 } |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
586 |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
587 if (remove) |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
588 { |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
589 privateTags.push_back(element); |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
590 } |
| 790 | 591 } |
| 592 } | |
| 593 | |
|
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
594 // Loop over the detected private tags to remove them |
| 790 | 595 for (Tags::iterator it = privateTags.begin(); |
| 596 it != privateTags.end(); ++it) | |
| 597 { | |
| 598 DcmElement* tmp = dataset.remove(*it); | |
| 599 if (tmp != NULL) | |
| 600 { | |
| 601 delete tmp; | |
| 602 } | |
| 603 } | |
| 604 } | |
| 605 | |
| 606 | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
607 static void InsertInternal(DcmDataset& dicom, |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
608 DcmElement* element) |
| 790 | 609 { |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
610 OFCondition cond = dicom.insert(element, false, false); |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
611 if (!cond.good()) |
| 790 | 612 { |
| 613 // This field already exists | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
614 delete element; |
| 790 | 615 throw OrthancException(ErrorCode_InternalError); |
| 616 } | |
| 617 } | |
| 618 | |
| 619 | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
620 void ParsedDicomFile::Insert(const DicomTag& tag, |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
621 const Json::Value& value, |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
622 bool decodeDataUriScheme, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
623 const std::string& privateCreator) |
| 790 | 624 { |
|
2797
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
625 if (tag.GetElement() == 0x0000) |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
626 { |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
627 // Prevent manually modifying generic group length tags: This is |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
628 // handled by DCMTK serialization |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
629 return; |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
630 } |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
631 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
632 if (GetDcmtkObject().getDataset()->tagExists(ToDcmtkBridge::Convert(tag))) |
|
1980
ebce5f456b8e
new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1979
diff
changeset
|
633 { |
|
ebce5f456b8e
new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1979
diff
changeset
|
634 throw OrthancException(ErrorCode_AlreadyExistingTag); |
|
ebce5f456b8e
new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1979
diff
changeset
|
635 } |
|
ebce5f456b8e
new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1979
diff
changeset
|
636 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
637 if (decodeDataUriScheme && |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
638 value.type() == Json::stringValue && |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
639 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
640 tag == DICOM_TAG_PIXEL_DATA)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
641 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
642 if (EmbedContentInternal(value.asString())) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
643 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
644 return; |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
645 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
646 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
647 |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
648 InvalidateCache(); |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
649 |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
650 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
651 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
652 std::unique_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
653 InsertInternal(*GetDcmtkObject().getDataset(), element.release()); |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
654 } |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
655 |
| 790 | 656 |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
657 void ParsedDicomFile::ReplacePlainString(const DicomTag& tag, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
658 const std::string& utf8Value) |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
659 { |
|
4011
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
660 // if (tag.GetElement() == 4257 && tag.GetGroup() == 1031) |
|
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
661 // { |
|
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
662 // Replace(tag, utf8Value, false, DicomReplaceMode_InsertIfAbsent, |
|
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
663 // "99CZM_CapeCod_OctGeneral"); |
|
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
664 // } |
|
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
665 // else |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
666 if (tag.IsPrivate()) |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
667 { |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
668 throw OrthancException(ErrorCode_InternalError, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
669 "Cannot apply this function to private tags: " + tag.Format()); |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
670 } |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
671 else |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
672 { |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
673 Replace(tag, utf8Value, false, DicomReplaceMode_InsertIfAbsent, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
674 "" /* not a private tag, so no private creator */); |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
675 } |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
676 } |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
677 |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
678 |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
679 void ParsedDicomFile::SetIfAbsent(const DicomTag& tag, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
680 const std::string& utf8Value) |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
681 { |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
682 std::string currentValue; |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
683 if (!GetTagValue(currentValue, tag)) |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
684 { |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
685 ReplacePlainString(tag, utf8Value); |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
686 } |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
687 } |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
688 |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
689 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
690 static bool CanReplaceProceed(DcmDataset& dicom, |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
691 const DcmTagKey& tag, |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
692 DicomReplaceMode mode) |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
693 { |
| 1979 | 694 if (dicom.findAndDeleteElement(tag).good()) |
| 790 | 695 { |
| 1979 | 696 // This tag was existing, it has been deleted |
| 697 return true; | |
| 698 } | |
| 699 else | |
| 700 { | |
| 701 // This tag was absent, act wrt. the specified "mode" | |
| 790 | 702 switch (mode) |
| 703 { | |
| 704 case DicomReplaceMode_InsertIfAbsent: | |
| 1979 | 705 return true; |
| 790 | 706 |
| 707 case DicomReplaceMode_ThrowIfAbsent: | |
| 708 throw OrthancException(ErrorCode_InexistentItem); | |
| 709 | |
| 710 case DicomReplaceMode_IgnoreIfAbsent: | |
| 1979 | 711 return false; |
| 712 | |
| 713 default: | |
| 714 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 790 | 715 } |
| 716 } | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
717 } |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
718 |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
719 |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
720 void ParsedDicomFile::UpdateStorageUid(const DicomTag& tag, |
| 1695 | 721 const std::string& utf8Value, |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
722 bool decodeDataUriScheme) |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
723 { |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
724 if (tag != DICOM_TAG_SOP_CLASS_UID && |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
725 tag != DICOM_TAG_SOP_INSTANCE_UID) |
| 790 | 726 { |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
727 return; |
| 790 | 728 } |
| 729 | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
730 std::string binary; |
| 1695 | 731 const std::string* decoded = &utf8Value; |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
732 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
733 if (decodeDataUriScheme && |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
734 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
735 { |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
736 std::string mime; |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
737 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
738 { |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
739 throw OrthancException(ErrorCode_BadFileFormat); |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
740 } |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
741 |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
742 decoded = &binary; |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
743 } |
| 1695 | 744 else |
| 745 { | |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
746 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
747 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
748 if (encoding != Encoding_Utf8) |
| 1695 | 749 { |
| 750 binary = Toolbox::ConvertFromUtf8(utf8Value, encoding); | |
| 751 decoded = &binary; | |
| 752 } | |
| 753 } | |
| 790 | 754 |
| 755 /** | |
| 756 * dcmodify will automatically correct 'Media Storage SOP Class | |
| 757 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if | |
| 758 * you make changes to the related tags in the dataset ('SOP Class | |
| 759 * UID' and 'SOP Instance UID') via insert or modify mode | |
| 760 * options. You can disable this behaviour by using the -nmu | |
| 761 * option. | |
| 762 **/ | |
| 763 | |
| 764 if (tag == DICOM_TAG_SOP_CLASS_UID) | |
| 765 { | |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
766 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, *decoded); |
| 790 | 767 } |
| 768 | |
| 769 if (tag == DICOM_TAG_SOP_INSTANCE_UID) | |
| 770 { | |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
771 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, *decoded); |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
772 } |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
773 } |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
774 |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
775 |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
776 void ParsedDicomFile::Replace(const DicomTag& tag, |
| 1695 | 777 const std::string& utf8Value, |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
778 bool decodeDataUriScheme, |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
779 DicomReplaceMode mode, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
780 const std::string& privateCreator) |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
781 { |
|
2797
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
782 if (tag.GetElement() == 0x0000) |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
783 { |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
784 // Prevent manually modifying generic group length tags: This is |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
785 // handled by DCMTK serialization |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
786 return; |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
787 } |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
788 |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
789 InvalidateCache(); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
790 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
791 DcmDataset& dicom = *GetDcmtkObject().getDataset(); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
792 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
793 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
794 // Either the tag was previously existing (and now removed), or |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
795 // the replace mode was set to "InsertIfAbsent" |
| 1979 | 796 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
797 if (decodeDataUriScheme && |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
798 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
799 tag == DICOM_TAG_PIXEL_DATA)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
800 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
801 if (EmbedContentInternal(utf8Value)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
802 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
803 return; |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
804 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
805 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
806 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
807 std::unique_ptr<DcmElement> element(FromDcmtkBridge::CreateElementForTag(tag, privateCreator)); |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
808 |
|
3368
3cd94bc66731
allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3342
diff
changeset
|
809 if (!utf8Value.empty()) |
|
3cd94bc66731
allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3342
diff
changeset
|
810 { |
|
3cd94bc66731
allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3342
diff
changeset
|
811 bool hasCodeExtensions; |
|
3cd94bc66731
allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3342
diff
changeset
|
812 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
813 FromDcmtkBridge::FillElementWithString(*element, utf8Value, decodeDataUriScheme, encoding); |
|
3368
3cd94bc66731
allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3342
diff
changeset
|
814 } |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
815 |
| 1979 | 816 InsertInternal(dicom, element.release()); |
| 817 UpdateStorageUid(tag, utf8Value, false); | |
| 818 } | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
819 } |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
820 |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
821 |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
822 void ParsedDicomFile::Replace(const DicomTag& tag, |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
823 const Json::Value& value, |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
824 bool decodeDataUriScheme, |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
825 DicomReplaceMode mode, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
826 const std::string& privateCreator) |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
827 { |
|
2797
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
828 if (tag.GetElement() == 0x0000) |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
829 { |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
830 // Prevent manually modifying generic group length tags: This is |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
831 // handled by DCMTK serialization |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
832 return; |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
833 } |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
834 |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
835 InvalidateCache(); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
836 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
837 DcmDataset& dicom = *GetDcmtkObject().getDataset(); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
838 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
839 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
840 // Either the tag was previously existing (and now removed), or |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
841 // the replace mode was set to "InsertIfAbsent" |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
842 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
843 if (decodeDataUriScheme && |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
844 value.type() == Json::stringValue && |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
845 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
846 tag == DICOM_TAG_PIXEL_DATA)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
847 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
848 if (EmbedContentInternal(value.asString())) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
849 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
850 return; |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
851 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
852 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
853 |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
854 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
855 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
856 InsertInternal(dicom, FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
| 1979 | 857 |
| 858 if (tag == DICOM_TAG_SOP_CLASS_UID || | |
| 859 tag == DICOM_TAG_SOP_INSTANCE_UID) | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
860 { |
| 1979 | 861 if (value.type() != Json::stringValue) |
| 862 { | |
| 863 throw OrthancException(ErrorCode_BadParameterType); | |
| 864 } | |
| 865 | |
| 866 UpdateStorageUid(tag, value.asString(), decodeDataUriScheme); | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
867 } |
| 790 | 868 } |
| 869 } | |
| 870 | |
| 871 | |
|
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
872 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
| 790 | 873 void ParsedDicomFile::Answer(RestApiOutput& output) |
| 874 { | |
| 875 std::string serialized; | |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
876 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, *GetDcmtkObject().getDataset())) |
| 790 | 877 { |
|
3901
603a7b86fa5f
route "/instances/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
878 output.AnswerBuffer(serialized, MimeType_Dicom); |
| 790 | 879 } |
| 880 } | |
|
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
881 #endif |
| 790 | 882 |
| 883 | |
| 884 bool ParsedDicomFile::GetTagValue(std::string& value, | |
| 885 const DicomTag& tag) | |
| 886 { | |
| 887 DcmTagKey k(tag.GetGroup(), tag.GetElement()); | |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
888 DcmDataset& dataset = *GetDcmtkObject().getDataset(); |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
889 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
890 if (tag.IsPrivate() || |
|
1655
e40fd0d925c5
/tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1641
diff
changeset
|
891 FromDcmtkBridge::IsUnknownTag(tag) || |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
892 tag == DICOM_TAG_PIXEL_DATA || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
893 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
| 790 | 894 { |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
895 const Uint8* data = NULL; // This is freed in the destructor of the dataset |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
896 long unsigned int count = 0; |
| 790 | 897 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
898 if (dataset.findAndGetUint8Array(k, data, &count).good()) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
899 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
900 if (count > 0) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
901 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
902 assert(data != NULL); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
903 value.assign(reinterpret_cast<const char*>(data), count); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
904 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
905 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
906 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
907 value.clear(); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
908 } |
| 790 | 909 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
910 return true; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
911 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
912 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
913 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
914 return false; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
915 } |
| 790 | 916 } |
| 917 else | |
| 918 { | |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
919 DcmElement* element = NULL; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
920 if (!dataset.findAndGetElement(k, element).good() || |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
921 element == NULL) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
922 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
923 return false; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
924 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
925 |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
926 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
927 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
928 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
929 std::set<DicomTag> tmp; |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
930 std::unique_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
|
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
931 (*element, DicomToJsonFlags_Default, |
|
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
932 0, encoding, hasCodeExtensions, tmp)); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
933 |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
934 if (v.get() == NULL || |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
935 v->IsNull()) |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
936 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
937 value = ""; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
938 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
939 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
940 { |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
941 // TODO v->IsBinary() |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
942 value = v->GetContent(); |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
943 } |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
944 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
945 return true; |
| 790 | 946 } |
| 947 } | |
| 948 | |
| 949 | |
| 950 DicomInstanceHasher ParsedDicomFile::GetHasher() | |
| 951 { | |
| 952 std::string patientId, studyUid, seriesUid, instanceUid; | |
| 953 | |
|
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
954 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID)) |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
955 { |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
956 /** |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
957 * If "PatientID" is absent, be tolerant by considering it |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
958 * equals the empty string, then proceed. In Orthanc <= 1.5.6, |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
959 * an exception "Bad file format" was generated. |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
960 * https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
| 3853 | 961 * https://hg.orthanc-server.com/orthanc/rev/4c45e018bd3de3cfa21d6efc6734673aaaee4435 |
|
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
962 **/ |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
963 patientId.clear(); |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
964 } |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
965 |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
966 if (!GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) || |
| 790 | 967 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) || |
| 968 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID)) | |
| 969 { | |
|
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
970 throw OrthancException(ErrorCode_BadFileFormat, "missing StudyInstanceUID, SeriesInstanceUID or SOPInstanceUID"); |
| 790 | 971 } |
| 972 | |
| 973 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid); | |
| 974 } | |
| 975 | |
| 976 | |
| 977 void ParsedDicomFile::SaveToMemoryBuffer(std::string& buffer) | |
| 978 { | |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
979 FromDcmtkBridge::SaveToMemoryBuffer(buffer, *GetDcmtkObject().getDataset()); |
| 790 | 980 } |
| 981 | |
| 982 | |
|
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
983 #if ORTHANC_SANDBOXED == 0 |
| 790 | 984 void ParsedDicomFile::SaveToFile(const std::string& path) |
| 985 { | |
| 986 // TODO Avoid using a temporary memory buffer, write directly on disk | |
| 987 std::string content; | |
| 988 SaveToMemoryBuffer(content); | |
| 2140 | 989 SystemToolbox::WriteFile(content, path); |
| 790 | 990 } |
|
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
991 #endif |
| 790 | 992 |
| 993 | |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
994 ParsedDicomFile::ParsedDicomFile(bool createIdentifiers) : pimpl_(new PImpl) |
| 790 | 995 { |
| 794 | 996 pimpl_->file_.reset(new DcmFileFormat); |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
997 |
|
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
998 if (createIdentifiers) |
|
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
999 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1000 ReplacePlainString(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1001 ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1002 ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1003 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
1004 } |
| 790 | 1005 } |
| 1006 | |
| 791 | 1007 |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1008 void ParsedDicomFile::CreateFromDicomMap(const DicomMap& source, |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1009 Encoding defaultEncoding, |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1010 bool permissive, |
|
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1011 const std::string& privateCreator) |
|
1786
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
1012 { |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1013 pimpl_->file_.reset(new DcmFileFormat); |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1014 InvalidateCache(); |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1015 |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1016 const DicomValue* tmp = source.TestAndGetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET); |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1017 |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1018 if (tmp == NULL) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1019 { |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1020 SetEncoding(defaultEncoding); |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1021 } |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1022 else if (tmp->IsBinary()) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1023 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1024 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1025 "Invalid binary string in the SpecificCharacterSet (0008,0005) tag"); |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1026 } |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1027 else if (tmp->IsNull() || |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1028 tmp->GetContent().empty()) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1029 { |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1030 SetEncoding(defaultEncoding); |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1031 } |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1032 else |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1033 { |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1034 Encoding encoding; |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1035 |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1036 if (GetDicomEncoding(encoding, tmp->GetContent().c_str())) |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1037 { |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1038 SetEncoding(encoding); |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1039 } |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1040 else |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1041 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1042 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1043 "Unsupported value for the SpecificCharacterSet (0008,0005) tag: \"" + |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1044 tmp->GetContent() + "\""); |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1045 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1046 } |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1047 |
|
3651
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1048 for (DicomMap::Content::const_iterator |
|
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1049 it = source.content_.begin(); it != source.content_.end(); ++it) |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1050 { |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1051 if (it->first != DICOM_TAG_SPECIFIC_CHARACTER_SET && |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1052 !it->second->IsNull()) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1053 { |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1054 try |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1055 { |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1056 // Same as "ReplacePlainString()", but with support for private creator |
|
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1057 const std::string& utf8Value = it->second->GetContent(); |
|
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1058 Replace(it->first, utf8Value, false, DicomReplaceMode_InsertIfAbsent, privateCreator); |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1059 } |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1060 catch (OrthancException&) |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1061 { |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1062 if (!permissive) |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1063 { |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1064 throw; |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1065 } |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1066 } |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1067 } |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1068 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1069 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1070 |
|
1787
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
1071 |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1072 ParsedDicomFile::ParsedDicomFile(const DicomMap& map, |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1073 Encoding defaultEncoding, |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1074 bool permissive, |
|
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1075 const std::string& privateCreator) : |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1076 pimpl_(new PImpl) |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1077 { |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1078 CreateFromDicomMap(map, defaultEncoding, permissive, privateCreator); |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1079 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1080 |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1081 |
|
1800
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
1082 ParsedDicomFile::ParsedDicomFile(const void* content, |
|
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
1083 size_t size) : pimpl_(new PImpl) |
| 791 | 1084 { |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1085 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(content, size)); |
| 791 | 1086 } |
| 1087 | |
| 794 | 1088 ParsedDicomFile::ParsedDicomFile(const std::string& content) : pimpl_(new PImpl) |
| 791 | 1089 { |
| 1090 if (content.size() == 0) | |
| 1091 { | |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1092 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(NULL, 0)); |
| 791 | 1093 } |
| 1094 else | |
| 1095 { | |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1096 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(&content[0], content.size())); |
| 791 | 1097 } |
| 1098 } | |
| 792 | 1099 |
| 1100 | |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1101 ParsedDicomFile::ParsedDicomFile(ParsedDicomFile& other, |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1102 bool keepSopInstanceUid) : |
| 794 | 1103 pimpl_(new PImpl) |
| 792 | 1104 { |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1105 pimpl_->file_.reset(dynamic_cast<DcmFileFormat*>(other.GetDcmtkObject().clone())); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1106 |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1107 if (!keepSopInstanceUid) |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1108 { |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1109 // Create a new instance-level identifier |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1110 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1111 } |
| 792 | 1112 } |
| 1113 | |
| 1114 | |
|
1788
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1115 ParsedDicomFile::ParsedDicomFile(DcmDataset& dicom) : pimpl_(new PImpl) |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1116 { |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1117 pimpl_->file_.reset(new DcmFileFormat(&dicom)); |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1118 } |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1119 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1120 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1121 ParsedDicomFile::ParsedDicomFile(DcmFileFormat& dicom) : pimpl_(new PImpl) |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1122 { |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1123 pimpl_->file_.reset(new DcmFileFormat(dicom)); |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1124 } |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1125 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1126 |
|
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1127 ParsedDicomFile::ParsedDicomFile(DcmFileFormat* dicom) : pimpl_(new PImpl) |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1128 { |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1129 pimpl_->file_.reset(dicom); // No cloning |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1130 } |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1131 |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1132 |
|
1824
b530c3dfe2a6
refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
changeset
|
1133 DcmFileFormat& ParsedDicomFile::GetDcmtkObject() const |
| 793 | 1134 { |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1135 if (pimpl_->file_.get() == NULL) |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1136 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1137 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1138 "ReleaseDcmtkObject() was called"); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1139 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1140 else |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1141 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1142 return *pimpl_->file_; |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1143 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1144 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1145 |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1146 |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1147 DcmFileFormat* ParsedDicomFile::ReleaseDcmtkObject() |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1148 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1149 if (pimpl_->file_.get() == NULL) |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1150 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1151 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1152 "ReleaseDcmtkObject() was called"); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1153 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1154 else |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1155 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1156 pimpl_->frameIndex_.reset(NULL); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1157 return pimpl_->file_.release(); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1158 } |
| 793 | 1159 } |
| 1160 | |
| 1161 | |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1162 ParsedDicomFile* ParsedDicomFile::Clone(bool keepSopInstanceUid) |
| 793 | 1163 { |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1164 return new ParsedDicomFile(*this, keepSopInstanceUid); |
| 793 | 1165 } |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1166 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1167 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1168 bool ParsedDicomFile::EmbedContentInternal(const std::string& dataUriScheme) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1169 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1170 std::string mimeString, content; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1171 if (!Toolbox::DecodeDataUriScheme(mimeString, content, dataUriScheme)) |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1172 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1173 return false; |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1174 } |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1175 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1176 Toolbox::ToLowerCase(mimeString); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1177 MimeType mime = StringToMimeType(mimeString); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1178 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1179 switch (mime) |
| 1562 | 1180 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1181 case MimeType_Png: |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1182 #if ORTHANC_ENABLE_PNG == 1 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1183 EmbedImage(mime, content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1184 break; |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1185 #else |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1186 throw OrthancException(ErrorCode_NotImplemented, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1187 "Orthanc was compiled without support of PNG"); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1188 #endif |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1189 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1190 case MimeType_Jpeg: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1191 #if ORTHANC_ENABLE_JPEG == 1 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1192 EmbedImage(mime, content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1193 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1194 #else |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1195 throw OrthancException(ErrorCode_NotImplemented, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1196 "Orthanc was compiled without support of JPEG"); |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1197 #endif |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1198 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1199 case MimeType_Pam: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1200 EmbedImage(mime, content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1201 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1202 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1203 case MimeType_Pdf: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1204 EmbedPdf(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1205 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1206 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1207 default: |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1208 throw OrthancException(ErrorCode_NotImplemented, |
| 2989 | 1209 "Unsupported MIME type for the content of a new DICOM file: " + |
| 1210 std::string(EnumerationToString(mime))); | |
| 1562 | 1211 } |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1212 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1213 return true; |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1214 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1215 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1216 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1217 void ParsedDicomFile::EmbedContent(const std::string& dataUriScheme) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1218 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1219 if (!EmbedContentInternal(dataUriScheme)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1220 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1221 throw OrthancException(ErrorCode_BadFileFormat); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1222 } |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1223 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1224 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1225 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1226 void ParsedDicomFile::EmbedImage(MimeType mime, |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1227 const std::string& content) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1228 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1229 switch (mime) |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1230 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1231 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1232 #if ORTHANC_ENABLE_JPEG == 1 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1233 case MimeType_Jpeg: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1234 { |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1235 JpegReader reader; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1236 reader.ReadFromMemory(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1237 EmbedImage(reader); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1238 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1239 } |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1240 #endif |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1241 |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1242 #if ORTHANC_ENABLE_PNG == 1 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1243 case MimeType_Png: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1244 { |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1245 PngReader reader; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1246 reader.ReadFromMemory(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1247 EmbedImage(reader); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1248 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1249 } |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1250 #endif |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1251 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1252 case MimeType_Pam: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1253 { |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1254 PamReader reader; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1255 reader.ReadFromMemory(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1256 EmbedImage(reader); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1257 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1258 } |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1259 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1260 default: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1261 throw OrthancException(ErrorCode_NotImplemented); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1262 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1263 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1264 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1265 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1266 void ParsedDicomFile::EmbedImage(const ImageAccessor& accessor) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1267 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1268 if (accessor.GetFormat() != PixelFormat_Grayscale8 && |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1269 accessor.GetFormat() != PixelFormat_Grayscale16 && |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1270 accessor.GetFormat() != PixelFormat_SignedGrayscale16 && |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1271 accessor.GetFormat() != PixelFormat_RGB24 && |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1272 accessor.GetFormat() != PixelFormat_RGBA32) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1273 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1274 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1275 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1276 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1277 InvalidateCache(); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1278 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1279 if (accessor.GetFormat() == PixelFormat_RGBA32) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1280 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1281 LOG(WARNING) << "Getting rid of the alpha channel when embedding a RGBA image inside DICOM"; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1282 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1283 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1284 // http://dicomiseasy.blogspot.be/2012/08/chapter-12-pixel-data.html |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1285 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1286 Remove(DICOM_TAG_PIXEL_DATA); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1287 ReplacePlainString(DICOM_TAG_COLUMNS, boost::lexical_cast<std::string>(accessor.GetWidth())); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1288 ReplacePlainString(DICOM_TAG_ROWS, boost::lexical_cast<std::string>(accessor.GetHeight())); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1289 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "1"); |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1290 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1291 // The "Number of frames" must only be present in multi-frame images |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1292 //ReplacePlainString(DICOM_TAG_NUMBER_OF_FRAMES, "1"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1293 |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1294 if (accessor.GetFormat() == PixelFormat_SignedGrayscale16) |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1295 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1296 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "1"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1297 } |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1298 else |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1299 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1300 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "0"); // Unsigned pixels |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1301 } |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1302 |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1303 unsigned int bytesPerPixel = 0; |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1304 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1305 switch (accessor.GetFormat()) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1306 { |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1307 case PixelFormat_Grayscale8: |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1308 // By default, grayscale images are MONOCHROME2 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1309 SetIfAbsent(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1310 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1311 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1312 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1313 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1314 bytesPerPixel = 1; |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1315 break; |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1316 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1317 case PixelFormat_RGB24: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1318 case PixelFormat_RGBA32: |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1319 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1320 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "3"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1321 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1322 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1323 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1324 bytesPerPixel = 3; |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1325 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1326 // "Planar configuration" must only present if "Samples per |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1327 // Pixel" is greater than 1 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1328 ReplacePlainString(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1329 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1330 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1331 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1332 case PixelFormat_Grayscale16: |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1333 case PixelFormat_SignedGrayscale16: |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1334 // By default, grayscale images are MONOCHROME2 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1335 SetIfAbsent(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1336 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1337 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "16"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1338 ReplacePlainString(DICOM_TAG_BITS_STORED, "16"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1339 ReplacePlainString(DICOM_TAG_HIGH_BIT, "15"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1340 bytesPerPixel = 2; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1341 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1342 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1343 default: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1344 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1345 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1346 |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1347 assert(bytesPerPixel != 0); |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1348 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1349 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(), |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1350 DICOM_TAG_PIXEL_DATA.GetElement()); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1351 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1352 std::unique_ptr<DcmPixelData> pixels(new DcmPixelData(key)); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1353 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1354 unsigned int pitch = accessor.GetWidth() * bytesPerPixel; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1355 Uint8* target = NULL; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1356 pixels->createUint8Array(accessor.GetHeight() * pitch, target); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1357 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1358 for (unsigned int y = 0; y < accessor.GetHeight(); y++) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1359 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1360 switch (accessor.GetFormat()) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1361 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1362 case PixelFormat_RGB24: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1363 case PixelFormat_Grayscale8: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1364 case PixelFormat_Grayscale16: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1365 case PixelFormat_SignedGrayscale16: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1366 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1367 memcpy(target, reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)), pitch); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1368 target += pitch; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1369 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1370 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1371 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1372 case PixelFormat_RGBA32: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1373 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1374 // The alpha channel is not supported by the DICOM standard |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1375 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1376 for (unsigned int x = 0; x < accessor.GetWidth(); x++, target += 3, source += 4) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1377 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1378 target[0] = source[0]; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1379 target[1] = source[1]; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1380 target[2] = source[2]; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1381 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1382 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1383 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1384 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1385 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1386 default: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1387 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1388 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1389 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1390 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1391 if (!GetDcmtkObject().getDataset()->insert(pixels.release(), false, false).good()) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1392 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1393 throw OrthancException(ErrorCode_InternalError); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1394 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1395 } |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
853
diff
changeset
|
1396 |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
853
diff
changeset
|
1397 |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1398 Encoding ParsedDicomFile::DetectEncoding(bool& hasCodeExtensions) const |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1399 { |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1400 return FromDcmtkBridge::DetectEncoding(hasCodeExtensions, |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1401 *GetDcmtkObject().getDataset(), |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
1402 GetDefaultDicomEncoding()); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1403 } |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1404 |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1405 |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1406 void ParsedDicomFile::SetEncoding(Encoding encoding) |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1407 { |
|
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1408 if (encoding == Encoding_Windows1251) |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1409 { |
|
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1410 // This Cyrillic codepage is not officially supported by the |
|
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1411 // DICOM standard. Do not set the SpecificCharacterSet tag. |
|
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1412 return; |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1413 } |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1414 |
|
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
1415 std::string s = GetDicomSpecificCharacterSet(encoding); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1416 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, s); |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1417 } |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1418 |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1419 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1420 DicomToJsonFormat format, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1421 DicomToJsonFlags flags, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1422 unsigned int maxStringLength) |
|
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1113
diff
changeset
|
1423 { |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1424 std::set<DicomTag> ignoreTagLength; |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1425 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObject().getDataset(), |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1426 format, flags, maxStringLength, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1427 GetDefaultDicomEncoding(), ignoreTagLength); |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1428 } |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1429 |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1430 |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1431 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1432 DicomToJsonFormat format, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1433 DicomToJsonFlags flags, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1434 unsigned int maxStringLength, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1435 const std::set<DicomTag>& ignoreTagLength) |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1436 { |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1437 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObject().getDataset(), |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1438 format, flags, maxStringLength, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1439 GetDefaultDicomEncoding(), ignoreTagLength); |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1440 } |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1441 |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1442 |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1443 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1444 const std::set<DicomTag>& ignoreTagLength) |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1445 { |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1446 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObject().getDataset(), ignoreTagLength); |
|
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1113
diff
changeset
|
1447 } |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1448 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1449 |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1450 void ParsedDicomFile::DatasetToJson(Json::Value& target) |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1451 { |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1452 const std::set<DicomTag> ignoreTagLength; |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1453 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObject().getDataset(), ignoreTagLength); |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1454 } |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1455 |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1456 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1457 void ParsedDicomFile::HeaderToJson(Json::Value& target, |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1458 DicomToJsonFormat format) |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1459 { |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1460 FromDcmtkBridge::ExtractHeaderAsJson(target, *GetDcmtkObject().getMetaInfo(), format, DicomToJsonFlags_None, 0); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1461 } |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1462 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1463 |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1464 bool ParsedDicomFile::HasTag(const DicomTag& tag) const |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1465 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1466 DcmTag key(tag.GetGroup(), tag.GetElement()); |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1467 return GetDcmtkObject().getDataset()->tagExists(key); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1468 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1469 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1470 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1471 void ParsedDicomFile::EmbedPdf(const std::string& pdf) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1472 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1473 if (pdf.size() < 5 || // (*) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1474 strncmp("%PDF-", pdf.c_str(), 5) != 0) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1475 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1476 throw OrthancException(ErrorCode_BadFileFormat, "Not a PDF file"); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1477 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1478 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1479 InvalidateCache(); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1480 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1481 ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, UID_EncapsulatedPDFStorage); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1482 ReplacePlainString(FromDcmtkBridge::Convert(DCM_Modality), "OT"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1483 ReplacePlainString(FromDcmtkBridge::Convert(DCM_ConversionType), "WSD"); |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1484 ReplacePlainString(FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument), MIME_PDF); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1485 //ReplacePlainString(FromDcmtkBridge::Convert(DCM_SeriesNumber), "1"); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1486 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1487 std::unique_ptr<DcmPolymorphOBOW> element(new DcmPolymorphOBOW(DCM_EncapsulatedDocument)); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1488 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1489 size_t s = pdf.size(); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1490 if (s & 1) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1491 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1492 // The size of the buffer must be even |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1493 s += 1; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1494 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1495 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1496 Uint8* bytes = NULL; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1497 OFCondition result = element->createUint8Array(s, bytes); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1498 if (!result.good() || bytes == NULL) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1499 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1500 throw OrthancException(ErrorCode_NotEnoughMemory); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1501 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1502 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1503 // Blank pad byte (no access violation, as "pdf.size() >= 5" because of (*) ) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1504 bytes[s - 1] = 0; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1505 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1506 memcpy(bytes, pdf.c_str(), pdf.size()); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1507 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1508 DcmPolymorphOBOW* obj = element.release(); |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1509 result = GetDcmtkObject().getDataset()->insert(obj); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1510 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1511 if (!result.good()) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1512 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1513 delete obj; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1514 throw OrthancException(ErrorCode_NotEnoughMemory); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1515 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1516 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1517 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1518 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1519 bool ParsedDicomFile::ExtractPdf(std::string& pdf) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1520 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1521 std::string sop, mime; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1522 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1523 if (!GetTagValue(sop, DICOM_TAG_SOP_CLASS_UID) || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1524 !GetTagValue(mime, FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument)) || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1525 sop != UID_EncapsulatedPDFStorage || |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1526 mime != MIME_PDF) |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1527 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1528 return false; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1529 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1530 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1531 if (!GetTagValue(pdf, DICOM_TAG_ENCAPSULATED_DOCUMENT)) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1532 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1533 return false; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1534 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1535 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1536 // Strip the possible pad byte at the end of file, because the |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1537 // encapsulated documents must always have an even length. The PDF |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1538 // format expects files to end with %%EOF followed by CR/LF. If |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1539 // the last character of the file is not a CR or LF, we assume it |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1540 // is a pad byte and remove it. |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1541 if (pdf.size() > 0) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1542 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1543 char last = *pdf.rbegin(); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1544 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1545 if (last != 10 && last != 13) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1546 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1547 pdf.resize(pdf.size() - 1); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1548 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1549 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1550 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1551 return true; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1552 } |
|
1662
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1553 |
|
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1554 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1555 ParsedDicomFile* ParsedDicomFile::CreateFromJson(const Json::Value& json, |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1556 DicomFromJsonFlags flags, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1557 const std::string& privateCreator) |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1558 { |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1559 const bool generateIdentifiers = (flags & DicomFromJsonFlags_GenerateIdentifiers) ? true : false; |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1560 const bool decodeDataUriScheme = (flags & DicomFromJsonFlags_DecodeDataUriScheme) ? true : false; |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1561 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1562 std::unique_ptr<ParsedDicomFile> result(new ParsedDicomFile(generateIdentifiers)); |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
1563 result->SetEncoding(FromDcmtkBridge::ExtractEncoding(json, GetDefaultDicomEncoding())); |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1564 |
|
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
1565 const Json::Value::Members tags = json.getMemberNames(); |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
1566 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1567 for (size_t i = 0; i < tags.size(); i++) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1568 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1569 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1570 const Json::Value& value = json[tags[i]]; |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1571 |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1572 if (tag == DICOM_TAG_PIXEL_DATA || |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1573 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1574 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1575 if (value.type() != Json::stringValue) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1576 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1577 throw OrthancException(ErrorCode_BadRequest); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1578 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1579 else |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1580 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1581 result->EmbedContent(value.asString()); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1582 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1583 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1584 else if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1585 { |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1586 result->Replace(tag, value, decodeDataUriScheme, DicomReplaceMode_InsertIfAbsent, privateCreator); |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1587 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1588 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1589 |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1590 return result.release(); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1591 } |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1592 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1593 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1594 void ParsedDicomFile::GetRawFrame(std::string& target, |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1595 MimeType& mime, |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1596 unsigned int frameId) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1597 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1598 if (pimpl_->frameIndex_.get() == NULL) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1599 { |
|
3745
113a7b994a12
extracting the raw frame in the transcoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
1600 assert(pimpl_->file_ != NULL && |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1601 GetDcmtkObject().getDataset() != NULL); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1602 pimpl_->frameIndex_.reset(new DicomFrameIndex(*GetDcmtkObject().getDataset())); |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1603 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1604 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1605 pimpl_->frameIndex_->GetRawFrame(target, frameId); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1606 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1607 E_TransferSyntax transferSyntax = GetDcmtkObject().getDataset()->getCurrentXfer(); |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1608 switch (transferSyntax) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1609 { |
|
1946
40b7a0176305
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1945
diff
changeset
|
1610 case EXS_JPEGProcess1: |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1611 mime = MimeType_Jpeg; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1612 break; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1613 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1614 case EXS_JPEG2000LosslessOnly: |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1615 case EXS_JPEG2000: |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1616 mime = MimeType_Jpeg2000; |
| 2016 | 1617 break; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1618 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1619 default: |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1620 mime = MimeType_Binary; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1621 break; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1622 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1623 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1624 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1625 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1626 void ParsedDicomFile::InvalidateCache() |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1627 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1628 pimpl_->frameIndex_.reset(NULL); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1629 } |
|
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1630 |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1631 |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1632 unsigned int ParsedDicomFile::GetFramesCount() const |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1633 { |
|
3745
113a7b994a12
extracting the raw frame in the transcoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
1634 assert(pimpl_->file_ != NULL && |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1635 GetDcmtkObject().getDataset() != NULL); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1636 return DicomFrameIndex::GetFramesCount(*GetDcmtkObject().getDataset()); |
|
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1637 } |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1638 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1639 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1640 void ParsedDicomFile::ChangeEncoding(Encoding target) |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1641 { |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1642 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1643 Encoding source = DetectEncoding(hasCodeExtensions); |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1644 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1645 if (source != target) // Avoid unnecessary conversion |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1646 { |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1647 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, GetDicomSpecificCharacterSet(target)); |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1648 FromDcmtkBridge::ChangeStringEncoding(*GetDcmtkObject().getDataset(), source, hasCodeExtensions, target); |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1649 } |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1650 } |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1651 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1652 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1653 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target) const |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1654 { |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1655 FromDcmtkBridge::ExtractDicomSummary(target, *GetDcmtkObject().getDataset()); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1656 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1657 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1658 |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1659 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target, |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1660 const std::set<DicomTag>& ignoreTagLength) const |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1661 { |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1662 FromDcmtkBridge::ExtractDicomSummary(target, *GetDcmtkObject().getDataset(), ignoreTagLength); |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1663 } |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1664 |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1665 |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1666 bool ParsedDicomFile::LookupTransferSyntax(std::string& result) |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1667 { |
|
3948
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1668 #if 0 |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1669 // This was the implementation in Orthanc <= 1.6.1 |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1670 |
|
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
1671 // TODO - Shouldn't "dataset.getCurrentXfer()" be used instead of |
| 3881 | 1672 // using the meta header? |
| 1673 const char* value = NULL; | |
| 1674 | |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1675 if (GetDcmtkObject().getMetaInfo() != NULL && |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1676 GetDcmtkObject().getMetaInfo()->findAndGetString(DCM_TransferSyntaxUID, value).good() && |
| 3881 | 1677 value != NULL) |
| 1678 { | |
| 1679 result.assign(value); | |
| 1680 return true; | |
| 1681 } | |
| 1682 else | |
| 1683 { | |
| 1684 return false; | |
| 1685 } | |
|
3948
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1686 #else |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1687 DicomTransferSyntax s; |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1688 if (FromDcmtkBridge::LookupOrthancTransferSyntax(s, GetDcmtkObject())) |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1689 { |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1690 result.assign(GetTransferSyntaxUid(s)); |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1691 return true; |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1692 } |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1693 else |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1694 { |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1695 return false; |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1696 } |
|
3d2fc1b5cc8c
ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
1697 #endif |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1698 } |
|
2281
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1699 |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1700 |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1701 bool ParsedDicomFile::LookupPhotometricInterpretation(PhotometricInterpretation& result) const |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1702 { |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1703 DcmTagKey k(DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetGroup(), |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1704 DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetElement()); |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1705 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1706 DcmDataset& dataset = *GetDcmtkObject().getDataset(); |
|
2281
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1707 |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1708 const char *c = NULL; |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1709 if (dataset.findAndGetString(k, c).good() && |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1710 c != NULL) |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1711 { |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1712 result = StringToPhotometricInterpretation(c); |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1713 return true; |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1714 } |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1715 else |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1716 { |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1717 return false; |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1718 } |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1719 } |
|
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1720 |
|
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1721 |
|
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1722 void ParsedDicomFile::Apply(ITagVisitor& visitor) |
|
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1723 { |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1724 FromDcmtkBridge::Apply(*GetDcmtkObject().getDataset(), visitor, GetDefaultDicomEncoding()); |
|
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1725 } |
| 790 | 1726 } |