Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/ParsedDicomFile.cpp @ 4714:8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 23 Jun 2021 14:57:49 +0200 |
| parents | 7182f5732480 |
| children | 9f207131c7f4 |
| rev | line source |
|---|---|
| 790 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
|
1288
6e7e5ed91c2d
upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
4 * Department, University Hospital of Liege, Belgium |
|
4437
d9473bd5ed43
upgrade to year 2021
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4297
diff
changeset
|
5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 790 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
|
4119
bf7b9edf6b81
re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4044
diff
changeset
|
8 * modify it under the terms of the GNU Lesser General Public License |
|
bf7b9edf6b81
re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4044
diff
changeset
|
9 * as published by the Free Software Foundation, either version 3 of |
|
bf7b9edf6b81
re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4044
diff
changeset
|
10 * the License, or (at your option) any later version. |
| 790 | 11 * |
| 12 * This program is distributed in the hope that it will be useful, but | |
| 13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
|
4119
bf7b9edf6b81
re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4044
diff
changeset
|
15 * Lesser General Public License for more details. |
| 790 | 16 * |
|
4119
bf7b9edf6b81
re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4044
diff
changeset
|
17 * You should have received a copy of the GNU Lesser General Public |
|
bf7b9edf6b81
re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4044
diff
changeset
|
18 * License along with this program. If not, see |
|
bf7b9edf6b81
re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4044
diff
changeset
|
19 * <http://www.gnu.org/licenses/>. |
| 790 | 20 **/ |
| 21 | |
| 22 | |
| 23 | |
| 24 /*========================================================================= | |
| 25 | |
| 26 This file is based on portions of the following project: | |
| 27 | |
| 28 Program: GDCM (Grassroots DICOM). A DICOM library | |
| 29 Module: http://gdcm.sourceforge.net/Copyright.html | |
| 30 | |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
31 Copyright (c) 2006-2011 Mathieu Malaterre |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
32 Copyright (c) 1993-2005 CREATIS |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
33 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image) |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
34 All rights reserved. |
| 790 | 35 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
36 Redistribution and use in source and binary forms, with or without |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
37 modification, are permitted provided that the following conditions are met: |
| 790 | 38 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
39 * Redistributions of source code must retain the above copyright notice, |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
40 this list of conditions and the following disclaimer. |
| 790 | 41 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
42 * Redistributions in binary form must reproduce the above copyright notice, |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
43 this list of conditions and the following disclaimer in the documentation |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
44 and/or other materials provided with the distribution. |
| 790 | 45 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
46 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
47 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
48 endorse or promote products derived from this software without specific |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
49 prior written permission. |
| 790 | 50 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
51 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS'' |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
52 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
53 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
54 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
55 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
56 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
57 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
58 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
59 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
60 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
| 790 | 61 |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
62 =========================================================================*/ |
| 790 | 63 |
| 64 | |
|
2382
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
65 #include "../PrecompiledHeaders.h" |
|
824
a811bdf8b8eb
precompiled headers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
817
diff
changeset
|
66 |
| 790 | 67 #ifndef NOMINMAX |
| 68 #define NOMINMAX | |
| 69 #endif | |
| 70 | |
| 71 #include "ParsedDicomFile.h" | |
| 72 | |
| 73 #include "FromDcmtkBridge.h" | |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
74 #include "Internals/DicomFrameIndex.h" |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
75 #include "Internals/DicomImageDecoder.h" |
| 790 | 76 #include "ToDcmtkBridge.h" |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
77 |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
78 #include "../Images/PamReader.h" |
|
2382
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
79 #include "../Logging.h" |
|
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
80 #include "../OrthancException.h" |
|
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
81 #include "../Toolbox.h" |
|
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
82 |
|
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
83 #if ORTHANC_SANDBOXED == 0 |
|
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
84 # include "../SystemToolbox.h" |
|
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
85 #endif |
| 790 | 86 |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
87 #if ORTHANC_ENABLE_JPEG == 1 |
|
2382
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
88 # include "../Images/JpegReader.h" |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
89 #endif |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
90 |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
91 #if ORTHANC_ENABLE_PNG == 1 |
|
2382
7284093111b0
big reorganization to cleanly separate framework vs. server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2381
diff
changeset
|
92 # include "../Images/PngReader.h" |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
93 #endif |
|
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
94 |
| 790 | 95 #include <list> |
| 96 #include <limits> | |
| 97 | |
| 98 #include <boost/lexical_cast.hpp> | |
| 99 | |
| 100 #include <dcmtk/dcmdata/dcchrstr.h> | |
| 101 #include <dcmtk/dcmdata/dcdicent.h> | |
| 102 #include <dcmtk/dcmdata/dcdict.h> | |
| 103 #include <dcmtk/dcmdata/dcfilefo.h> | |
| 104 #include <dcmtk/dcmdata/dcuid.h> | |
| 105 #include <dcmtk/dcmdata/dcmetinf.h> | |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
106 #include <dcmtk/dcmdata/dcdeftag.h> |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
107 #include <dcmtk/dcmdata/dcswap.h> |
| 790 | 108 |
| 109 #include <dcmtk/dcmdata/dcvrae.h> | |
| 110 #include <dcmtk/dcmdata/dcvras.h> | |
| 111 #include <dcmtk/dcmdata/dcvrcs.h> | |
| 112 #include <dcmtk/dcmdata/dcvrda.h> | |
| 113 #include <dcmtk/dcmdata/dcvrds.h> | |
| 114 #include <dcmtk/dcmdata/dcvrdt.h> | |
| 115 #include <dcmtk/dcmdata/dcvrfd.h> | |
| 116 #include <dcmtk/dcmdata/dcvrfl.h> | |
| 117 #include <dcmtk/dcmdata/dcvris.h> | |
| 118 #include <dcmtk/dcmdata/dcvrlo.h> | |
| 119 #include <dcmtk/dcmdata/dcvrlt.h> | |
| 120 #include <dcmtk/dcmdata/dcvrpn.h> | |
| 121 #include <dcmtk/dcmdata/dcvrsh.h> | |
| 122 #include <dcmtk/dcmdata/dcvrsl.h> | |
| 123 #include <dcmtk/dcmdata/dcvrss.h> | |
| 124 #include <dcmtk/dcmdata/dcvrst.h> | |
| 125 #include <dcmtk/dcmdata/dcvrtm.h> | |
| 126 #include <dcmtk/dcmdata/dcvrui.h> | |
| 127 #include <dcmtk/dcmdata/dcvrul.h> | |
| 128 #include <dcmtk/dcmdata/dcvrus.h> | |
| 129 #include <dcmtk/dcmdata/dcvrut.h> | |
| 130 #include <dcmtk/dcmdata/dcpixel.h> | |
| 131 #include <dcmtk/dcmdata/dcpixseq.h> | |
| 132 #include <dcmtk/dcmdata/dcpxitem.h> | |
| 133 | |
| 134 | |
| 135 #include <boost/math/special_functions/round.hpp> | |
| 136 #include <dcmtk/dcmdata/dcostrmb.h> | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
137 #include <boost/algorithm/string/predicate.hpp> |
| 790 | 138 |
| 139 | |
|
1945
76ff6eecf07f
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1941
diff
changeset
|
140 #if DCMTK_VERSION_NUMBER <= 360 |
|
76ff6eecf07f
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1941
diff
changeset
|
141 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax |
|
76ff6eecf07f
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1941
diff
changeset
|
142 #endif |
|
76ff6eecf07f
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1941
diff
changeset
|
143 |
|
76ff6eecf07f
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1941
diff
changeset
|
144 |
| 790 | 145 |
| 146 namespace Orthanc | |
| 147 { | |
| 794 | 148 struct ParsedDicomFile::PImpl |
| 149 { | |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
150 std::unique_ptr<DcmFileFormat> file_; |
|
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
151 std::unique_ptr<DicomFrameIndex> frameIndex_; |
| 794 | 152 }; |
| 153 | |
| 154 | |
|
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
155 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
156 static void ParseTagAndGroup(DcmTagKey& key, |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
157 const std::string& tag) |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
158 { |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
159 DicomTag t = FromDcmtkBridge::ParseTag(tag); |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
160 key = DcmTagKey(t.GetGroup(), t.GetElement()); |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
161 } |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
162 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
163 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
164 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData, |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
165 E_TransferSyntax transferSyntax) |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
166 { |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
167 DcmPixelSequence* pixelSequence = NULL; |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
168 if (pixelData.getEncapsulatedRepresentation |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
169 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
170 { |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
171 return pixelSequence->card(); |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
172 } |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
173 else |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
174 { |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
175 return 1; |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
176 } |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
177 } |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
178 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
179 |
| 790 | 180 static void SendPathValueForDictionary(RestApiOutput& output, |
| 181 DcmItem& dicom) | |
| 182 { | |
| 183 Json::Value v = Json::arrayValue; | |
| 184 | |
| 185 for (unsigned long i = 0; i < dicom.card(); i++) | |
| 186 { | |
| 187 DcmElement* element = dicom.getElement(i); | |
| 188 if (element) | |
| 189 { | |
| 190 char buf[16]; | |
| 191 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag()); | |
| 192 v.append(buf); | |
| 193 } | |
| 194 } | |
| 195 | |
| 196 output.AnswerJson(v); | |
| 197 } | |
| 198 | |
| 199 | |
| 200 static void SendSequence(RestApiOutput& output, | |
| 201 DcmSequenceOfItems& sequence) | |
| 202 { | |
| 203 // This element is a sequence | |
| 204 Json::Value v = Json::arrayValue; | |
| 205 | |
| 206 for (unsigned long i = 0; i < sequence.card(); i++) | |
| 207 { | |
| 208 v.append(boost::lexical_cast<std::string>(i)); | |
| 209 } | |
| 210 | |
| 211 output.AnswerJson(v); | |
| 212 } | |
| 213 | |
| 214 | |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
215 namespace |
| 790 | 216 { |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
217 class DicomFieldStream : public IHttpStreamAnswer |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
218 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
219 private: |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
220 DcmElement& element_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
221 uint32_t length_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
222 uint32_t offset_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
223 std::string chunk_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
224 size_t chunkSize_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
225 |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
226 public: |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
227 DicomFieldStream(DcmElement& element, |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
228 E_TransferSyntax transferSyntax) : |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
229 element_(element), |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
230 length_(element.getLength(transferSyntax)), |
| 1616 | 231 offset_(0), |
| 232 chunkSize_(0) | |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
233 { |
| 1521 | 234 static const size_t CHUNK_SIZE = 64 * 1024; // Use chunks of max 64KB |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
235 chunk_.resize(CHUNK_SIZE); |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
236 } |
| 790 | 237 |
|
1523
c388502a066d
testing FilesystemHttpSender
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1521
diff
changeset
|
238 virtual HttpCompression SetupHttpCompression(bool /*gzipAllowed*/, |
|
c388502a066d
testing FilesystemHttpSender
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1521
diff
changeset
|
239 bool /*deflateAllowed*/) |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
240 ORTHANC_OVERRIDE |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
241 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
242 // No support for compression |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
243 return HttpCompression_None; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
244 } |
| 790 | 245 |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
246 virtual bool HasContentFilename(std::string& filename) ORTHANC_OVERRIDE |
| 790 | 247 { |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
248 return false; |
| 790 | 249 } |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
250 |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
251 virtual std::string GetContentType() ORTHANC_OVERRIDE |
| 790 | 252 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
253 return EnumerationToString(MimeType_Binary); |
| 790 | 254 } |
| 255 | |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
256 virtual uint64_t GetContentLength() ORTHANC_OVERRIDE |
| 790 | 257 { |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
258 return length_; |
| 790 | 259 } |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
260 |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
261 virtual bool ReadNextChunk() ORTHANC_OVERRIDE |
| 790 | 262 { |
| 1520 | 263 assert(offset_ <= length_); |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
264 |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
265 if (offset_ == length_) |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
266 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
267 return false; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
268 } |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
269 else |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
270 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
271 if (length_ - offset_ < chunk_.size()) |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
272 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
273 chunkSize_ = length_ - offset_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
274 } |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
275 else |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
276 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
277 chunkSize_ = chunk_.size(); |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
278 } |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
279 |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
280 OFCondition cond = element_.getPartialValue(&chunk_[0], offset_, chunkSize_); |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
281 |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
282 offset_ += chunkSize_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
283 |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
284 if (!cond.good()) |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
285 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
286 throw OrthancException(ErrorCode_InternalError, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
287 "Error while sending a DICOM field: " + |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
288 std::string(cond.text())); |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
289 } |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
290 |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
291 return true; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
292 } |
| 790 | 293 } |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
294 |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
295 virtual const char *GetChunkContent() ORTHANC_OVERRIDE |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
296 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
297 return chunk_.c_str(); |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
298 } |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
299 |
|
2924
22524fd06225
macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2910
diff
changeset
|
300 virtual size_t GetChunkSize() ORTHANC_OVERRIDE |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
301 { |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
302 return chunkSize_; |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
303 } |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
304 }; |
| 790 | 305 } |
| 306 | |
| 307 | |
| 308 static bool AnswerPixelData(RestApiOutput& output, | |
| 309 DcmItem& dicom, | |
| 310 E_TransferSyntax transferSyntax, | |
| 311 const std::string* blockUri) | |
| 312 { | |
| 313 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(), | |
| 314 DICOM_TAG_PIXEL_DATA.GetElement()); | |
| 315 | |
| 316 DcmElement *element = NULL; | |
| 317 if (!dicom.findAndGetElement(k, element).good() || | |
| 318 element == NULL) | |
| 319 { | |
| 320 return false; | |
| 321 } | |
| 322 | |
| 323 try | |
| 324 { | |
| 325 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); | |
| 326 if (blockUri == NULL) | |
| 327 { | |
|
1913
41e402cd7b3a
do not generate RC files for non-Windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1902
diff
changeset
|
328 // The user asks how many blocks are present in this pixel data |
| 790 | 329 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax); |
| 330 | |
| 331 Json::Value result(Json::arrayValue); | |
| 332 for (unsigned int i = 0; i < blocks; i++) | |
| 333 { | |
| 334 result.append(boost::lexical_cast<std::string>(i)); | |
| 335 } | |
| 336 | |
| 337 output.AnswerJson(result); | |
| 338 return true; | |
| 339 } | |
| 340 | |
| 341 | |
| 342 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri); | |
| 343 | |
| 344 if (block < GetPixelDataBlockCount(pixelData, transferSyntax)) | |
| 345 { | |
| 346 DcmPixelSequence* pixelSequence = NULL; | |
| 347 if (pixelData.getEncapsulatedRepresentation | |
| 348 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) | |
| 349 { | |
| 350 // This is the case for JPEG transfer syntaxes | |
| 351 if (block < pixelSequence->card()) | |
| 352 { | |
| 353 DcmPixelItem* pixelItem = NULL; | |
| 354 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem) | |
| 355 { | |
| 356 if (pixelItem->getLength() == 0) | |
| 357 { | |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
358 output.AnswerBuffer(NULL, 0, MimeType_Binary); |
| 790 | 359 return true; |
| 360 } | |
| 361 | |
| 362 Uint8* buffer = NULL; | |
| 363 if (pixelItem->getUint8Array(buffer).good() && buffer) | |
| 364 { | |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
365 output.AnswerBuffer(buffer, pixelItem->getLength(), MimeType_Binary); |
| 790 | 366 return true; |
| 367 } | |
| 368 } | |
| 369 } | |
| 370 } | |
| 371 else | |
| 372 { | |
| 373 // This is the case for raw, uncompressed image buffers | |
| 374 assert(*blockUri == "0"); | |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
375 DicomFieldStream stream(*element, transferSyntax); |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
376 output.AnswerStream(stream); |
| 790 | 377 } |
| 378 } | |
| 379 } | |
| 380 catch (boost::bad_lexical_cast&) | |
| 381 { | |
| 382 // The URI entered by the user is not a number | |
| 383 } | |
| 384 catch (std::bad_cast&) | |
| 385 { | |
| 386 // This should never happen | |
| 387 } | |
| 388 | |
| 389 return false; | |
| 390 } | |
| 391 | |
| 392 | |
| 393 static void SendPathValueForLeaf(RestApiOutput& output, | |
| 394 const std::string& tag, | |
| 395 DcmItem& dicom, | |
| 396 E_TransferSyntax transferSyntax) | |
| 397 { | |
| 398 DcmTagKey k; | |
| 399 ParseTagAndGroup(k, tag); | |
| 400 | |
| 401 DcmSequenceOfItems* sequence = NULL; | |
| 402 if (dicom.findAndGetSequence(k, sequence).good() && | |
| 403 sequence != NULL && | |
| 404 sequence->getVR() == EVR_SQ) | |
| 405 { | |
| 406 SendSequence(output, *sequence); | |
| 407 return; | |
| 408 } | |
| 409 | |
| 410 DcmElement* element = NULL; | |
| 411 if (dicom.findAndGetElement(k, element).good() && | |
| 412 element != NULL && | |
| 413 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags | |
| 414 element->getVR() != EVR_SQ) | |
| 415 { | |
|
1519
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
416 DicomFieldStream stream(*element, transferSyntax); |
|
8bd0d897763f
refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
417 output.AnswerStream(stream); |
| 790 | 418 } |
| 419 } | |
|
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
420 #endif |
| 790 | 421 |
|
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
422 |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
423 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
| 790 | 424 void ParsedDicomFile::SendPathValue(RestApiOutput& output, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
425 const UriComponents& uri) const |
| 790 | 426 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
427 DcmItem* dicom = GetDcmtkObjectConst().getDataset(); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
428 E_TransferSyntax transferSyntax = GetDcmtkObjectConst().getDataset()->getCurrentXfer(); |
| 790 | 429 |
| 430 // Special case: Accessing the pixel data | |
| 431 if (uri.size() == 1 || | |
| 432 uri.size() == 2) | |
| 433 { | |
| 434 DcmTagKey tag; | |
| 435 ParseTagAndGroup(tag, uri[0]); | |
| 436 | |
| 437 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() && | |
| 438 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement()) | |
| 439 { | |
| 440 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]); | |
| 441 return; | |
| 442 } | |
| 443 } | |
| 444 | |
| 445 // Go down in the tag hierarchy according to the URI | |
| 446 for (size_t pos = 0; pos < uri.size() / 2; pos++) | |
| 447 { | |
| 448 size_t index; | |
| 449 try | |
| 450 { | |
| 451 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]); | |
| 452 } | |
| 453 catch (boost::bad_lexical_cast&) | |
| 454 { | |
| 455 return; | |
| 456 } | |
| 457 | |
| 458 DcmTagKey k; | |
| 459 DcmItem *child = NULL; | |
| 460 ParseTagAndGroup(k, uri[2 * pos]); | |
| 461 if (!dicom->findAndGetSequenceItem(k, child, index).good() || | |
| 462 child == NULL) | |
| 463 { | |
| 464 return; | |
| 465 } | |
| 466 | |
| 467 dicom = child; | |
| 468 } | |
| 469 | |
| 470 // We have reached the end of the URI | |
| 471 if (uri.size() % 2 == 0) | |
| 472 { | |
| 473 SendPathValueForDictionary(output, *dicom); | |
| 474 } | |
| 475 else | |
| 476 { | |
| 477 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax); | |
| 478 } | |
| 479 } | |
|
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
480 #endif |
|
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
481 |
| 790 | 482 |
| 483 void ParsedDicomFile::Remove(const DicomTag& tag) | |
| 484 { | |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
485 RemovePath(DicomPath(tag)); |
| 790 | 486 } |
| 487 | |
| 488 | |
|
2310
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
489 void ParsedDicomFile::Clear(const DicomTag& tag, |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
490 bool onlyIfExists) |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
491 { |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
492 ClearPath(DicomPath(tag), onlyIfExists); |
|
2310
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
493 } |
|
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
494 |
| 790 | 495 |
|
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
496 void ParsedDicomFile::RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep) |
| 790 | 497 { |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
498 InvalidateCache(); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
499 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
500 DcmDataset& dataset = *GetDcmtkObject().getDataset(); |
|
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
501 |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
502 // Loop over the dataset to detect its private tags |
| 790 | 503 typedef std::list<DcmElement*> Tags; |
| 504 Tags privateTags; | |
| 505 | |
| 506 for (unsigned long i = 0; i < dataset.card(); i++) | |
| 507 { | |
| 508 DcmElement* element = dataset.getElement(i); | |
| 509 DcmTag tag(element->getTag()); | |
|
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
510 |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
511 // Is this a private tag? |
| 1694 | 512 if (tag.isPrivate()) |
| 790 | 513 { |
|
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
514 bool remove = true; |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
515 |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
516 // Check whether this private tag is to be kept |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
517 if (toKeep != NULL) |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
518 { |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
519 DicomTag tmp = FromDcmtkBridge::Convert(tag); |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
520 if (toKeep->find(tmp) != toKeep->end()) |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
521 { |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
522 remove = false; // Keep it |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
523 } |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
524 } |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
525 |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
526 if (remove) |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
527 { |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
528 privateTags.push_back(element); |
|
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
529 } |
| 790 | 530 } |
| 531 } | |
| 532 | |
|
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
533 // Loop over the detected private tags to remove them |
| 790 | 534 for (Tags::iterator it = privateTags.begin(); |
| 535 it != privateTags.end(); ++it) | |
| 536 { | |
| 537 DcmElement* tmp = dataset.remove(*it); | |
| 538 if (tmp != NULL) | |
| 539 { | |
| 540 delete tmp; | |
| 541 } | |
| 542 } | |
| 543 } | |
| 544 | |
| 545 | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
546 static void InsertInternal(DcmDataset& dicom, |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
547 DcmElement* element) |
| 790 | 548 { |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
549 OFCondition cond = dicom.insert(element, false, false); |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
550 if (!cond.good()) |
| 790 | 551 { |
| 552 // This field already exists | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
553 delete element; |
| 790 | 554 throw OrthancException(ErrorCode_InternalError); |
| 555 } | |
| 556 } | |
| 557 | |
| 558 | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
559 void ParsedDicomFile::Insert(const DicomTag& tag, |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
560 const Json::Value& value, |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
561 bool decodeDataUriScheme, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
562 const std::string& privateCreator) |
| 790 | 563 { |
|
2797
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
564 if (tag.GetElement() == 0x0000) |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
565 { |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
566 // Prevent manually modifying generic group length tags: This is |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
567 // handled by DCMTK serialization |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
568 return; |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
569 } |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
570 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
571 if (GetDcmtkObject().getDataset()->tagExists(ToDcmtkBridge::Convert(tag))) |
|
1980
ebce5f456b8e
new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1979
diff
changeset
|
572 { |
|
ebce5f456b8e
new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1979
diff
changeset
|
573 throw OrthancException(ErrorCode_AlreadyExistingTag); |
|
ebce5f456b8e
new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1979
diff
changeset
|
574 } |
|
ebce5f456b8e
new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1979
diff
changeset
|
575 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
576 if (decodeDataUriScheme && |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
577 value.type() == Json::stringValue && |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
578 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
579 tag == DICOM_TAG_PIXEL_DATA)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
580 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
581 if (EmbedContentInternal(value.asString())) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
582 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
583 return; |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
584 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
585 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
586 |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
587 InvalidateCache(); |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
588 |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
589 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
590 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
591 std::unique_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
592 InsertInternal(*GetDcmtkObject().getDataset(), element.release()); |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
593 } |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
594 |
| 790 | 595 |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
596 void ParsedDicomFile::ReplacePlainString(const DicomTag& tag, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
597 const std::string& utf8Value) |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
598 { |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
599 if (tag.IsPrivate()) |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
600 { |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
601 throw OrthancException(ErrorCode_InternalError, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
602 "Cannot apply this function to private tags: " + tag.Format()); |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
603 } |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
604 else |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
605 { |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
606 Replace(tag, utf8Value, false, DicomReplaceMode_InsertIfAbsent, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
607 "" /* not a private tag, so no private creator */); |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
608 } |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
609 } |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
610 |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
611 |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
612 void ParsedDicomFile::SetIfAbsent(const DicomTag& tag, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
613 const std::string& utf8Value) |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
614 { |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
615 std::string currentValue; |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
616 if (!GetTagValue(currentValue, tag)) |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
617 { |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
618 ReplacePlainString(tag, utf8Value); |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
619 } |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
620 } |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
621 |
|
4296
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
622 void ParsedDicomFile::RemovePrivateTags() |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
623 { |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
624 RemovePrivateTagsInternal(NULL); |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
625 } |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
626 |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
627 void ParsedDicomFile::RemovePrivateTags(const std::set<DicomTag> &toKeep) |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
628 { |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
629 RemovePrivateTagsInternal(&toKeep); |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
630 } |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
631 |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
632 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
633 static bool CanReplaceProceed(DcmDataset& dicom, |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
634 const DcmTagKey& tag, |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
635 DicomReplaceMode mode) |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
636 { |
| 1979 | 637 if (dicom.findAndDeleteElement(tag).good()) |
| 790 | 638 { |
| 1979 | 639 // This tag was existing, it has been deleted |
| 640 return true; | |
| 641 } | |
| 642 else | |
| 643 { | |
| 644 // This tag was absent, act wrt. the specified "mode" | |
| 790 | 645 switch (mode) |
| 646 { | |
| 647 case DicomReplaceMode_InsertIfAbsent: | |
| 1979 | 648 return true; |
| 790 | 649 |
| 650 case DicomReplaceMode_ThrowIfAbsent: | |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
651 throw OrthancException(ErrorCode_InexistentItem, "Cannot replace inexistent tag: " + |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
652 FromDcmtkBridge::GetTagName(DicomTag(tag.getGroup(), tag.getElement()), "")); |
| 790 | 653 |
| 654 case DicomReplaceMode_IgnoreIfAbsent: | |
| 1979 | 655 return false; |
| 656 | |
| 657 default: | |
| 658 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 790 | 659 } |
| 660 } | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
661 } |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
662 |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
663 |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
664 void ParsedDicomFile::UpdateStorageUid(const DicomTag& tag, |
| 1695 | 665 const std::string& utf8Value, |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
666 bool decodeDataUriScheme) |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
667 { |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
668 if (tag != DICOM_TAG_SOP_CLASS_UID && |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
669 tag != DICOM_TAG_SOP_INSTANCE_UID) |
| 790 | 670 { |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
671 return; |
| 790 | 672 } |
| 673 | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
674 std::string binary; |
| 1695 | 675 const std::string* decoded = &utf8Value; |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
676 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
677 if (decodeDataUriScheme && |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
678 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
679 { |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
680 std::string mime; |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
681 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
682 { |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
683 throw OrthancException(ErrorCode_BadFileFormat); |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
684 } |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
685 |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
686 decoded = &binary; |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
687 } |
| 1695 | 688 else |
| 689 { | |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
690 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
691 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
692 if (encoding != Encoding_Utf8) |
| 1695 | 693 { |
| 694 binary = Toolbox::ConvertFromUtf8(utf8Value, encoding); | |
| 695 decoded = &binary; | |
| 696 } | |
| 697 } | |
| 790 | 698 |
| 699 /** | |
| 700 * dcmodify will automatically correct 'Media Storage SOP Class | |
| 701 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if | |
| 702 * you make changes to the related tags in the dataset ('SOP Class | |
| 703 * UID' and 'SOP Instance UID') via insert or modify mode | |
| 704 * options. You can disable this behaviour by using the -nmu | |
| 705 * option. | |
| 706 **/ | |
| 707 | |
| 708 if (tag == DICOM_TAG_SOP_CLASS_UID) | |
| 709 { | |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
710 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, *decoded); |
| 790 | 711 } |
| 712 | |
| 713 if (tag == DICOM_TAG_SOP_INSTANCE_UID) | |
| 714 { | |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
715 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, *decoded); |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
716 } |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
717 } |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
718 |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
719 |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
720 void ParsedDicomFile::Replace(const DicomTag& tag, |
| 1695 | 721 const std::string& utf8Value, |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
722 bool decodeDataUriScheme, |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
723 DicomReplaceMode mode, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
724 const std::string& privateCreator) |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
725 { |
|
2797
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
726 if (tag.GetElement() == 0x0000) |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
727 { |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
728 // Prevent manually modifying generic group length tags: This is |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
729 // handled by DCMTK serialization |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
730 return; |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
731 } |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
732 else |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
733 { |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
734 InvalidateCache(); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
735 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
736 DcmDataset& dicom = *GetDcmtkObject().getDataset(); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
737 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
738 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
739 // Either the tag was previously existing (and now removed), or |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
740 // the replace mode was set to "InsertIfAbsent" |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
741 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
742 if (decodeDataUriScheme && |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
743 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
744 tag == DICOM_TAG_PIXEL_DATA)) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
745 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
746 if (EmbedContentInternal(utf8Value)) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
747 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
748 return; |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
749 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
750 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
751 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
752 std::unique_ptr<DcmElement> element(FromDcmtkBridge::CreateElementForTag(tag, privateCreator)); |
| 1979 | 753 |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
754 if (!utf8Value.empty()) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
755 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
756 bool hasCodeExtensions; |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
757 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
758 FromDcmtkBridge::FillElementWithString(*element, utf8Value, decodeDataUriScheme, encoding); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
759 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
760 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
761 InsertInternal(dicom, element.release()); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
762 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
763 if (tag == DICOM_TAG_SOP_CLASS_UID || |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
764 tag == DICOM_TAG_SOP_INSTANCE_UID) |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
765 { |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
766 if (decodeDataUriScheme && |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
767 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
768 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
769 std::string mime, decoded; |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
770 if (!Toolbox::DecodeDataUriScheme(mime, decoded, utf8Value)) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
771 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
772 throw OrthancException(ErrorCode_BadFileFormat); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
773 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
774 else |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
775 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
776 UpdateStorageUid(tag, decoded, false); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
777 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
778 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
779 else |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
780 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
781 UpdateStorageUid(tag, utf8Value, false); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
782 } |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
783 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
784 } |
| 1979 | 785 } |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
786 } |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
787 |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
788 |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
789 void ParsedDicomFile::Replace(const DicomTag& tag, |
|
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
790 const Json::Value& value, |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
791 bool decodeDataUriScheme, |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
792 DicomReplaceMode mode, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
793 const std::string& privateCreator) |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
794 { |
|
2797
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
795 if (tag.GetElement() == 0x0000) |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
796 { |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
797 // Prevent manually modifying generic group length tags: This is |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
798 // handled by DCMTK serialization |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
799 return; |
|
9a0c6a046cc2
Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
800 } |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
801 else if (value.type() == Json::stringValue) |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
802 { |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
803 Replace(tag, value.asString(), decodeDataUriScheme, mode, privateCreator); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
804 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
805 else |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
806 { |
| 1979 | 807 if (tag == DICOM_TAG_SOP_CLASS_UID || |
| 808 tag == DICOM_TAG_SOP_INSTANCE_UID) | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
809 { |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
810 // Must be a string |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
811 throw OrthancException(ErrorCode_BadParameterType); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
812 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
813 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
814 InvalidateCache(); |
| 1979 | 815 |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
816 DcmDataset& dicom = *GetDcmtkObject().getDataset(); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
817 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
818 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
819 // Either the tag was previously existing (and now removed), or |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
820 // the replace mode was set to "InsertIfAbsent" |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
821 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
822 bool hasCodeExtensions; |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
823 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
824 InsertInternal(dicom, FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
825 } |
| 790 | 826 } |
| 827 } | |
| 828 | |
| 829 | |
|
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
830 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
831 void ParsedDicomFile::Answer(RestApiOutput& output) const |
| 790 | 832 { |
| 833 std::string serialized; | |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
834 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, *GetDcmtkObjectConst().getDataset())) |
| 790 | 835 { |
|
3901
603a7b86fa5f
route "/instances/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
836 output.AnswerBuffer(serialized, MimeType_Dicom); |
| 790 | 837 } |
| 838 } | |
|
2394
75c779ca948c
fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
839 #endif |
| 790 | 840 |
| 841 | |
| 842 bool ParsedDicomFile::GetTagValue(std::string& value, | |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
843 const DicomTag& tag) const |
| 790 | 844 { |
| 845 DcmTagKey k(tag.GetGroup(), tag.GetElement()); | |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
846 DcmDataset& dataset = *GetDcmtkObjectConst().getDataset(); |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
847 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
848 if (tag.IsPrivate() || |
|
1655
e40fd0d925c5
/tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1641
diff
changeset
|
849 FromDcmtkBridge::IsUnknownTag(tag) || |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
850 tag == DICOM_TAG_PIXEL_DATA || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
851 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
| 790 | 852 { |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
853 const Uint8* data = NULL; // This is freed in the destructor of the dataset |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
854 long unsigned int count = 0; |
| 790 | 855 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
856 if (dataset.findAndGetUint8Array(k, data, &count).good()) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
857 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
858 if (count > 0) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
859 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
860 assert(data != NULL); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
861 value.assign(reinterpret_cast<const char*>(data), count); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
862 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
863 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
864 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
865 value.clear(); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
866 } |
| 790 | 867 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
868 return true; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
869 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
870 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
871 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
872 return false; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
873 } |
| 790 | 874 } |
| 875 else | |
| 876 { | |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
877 DcmElement* element = NULL; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
878 if (!dataset.findAndGetElement(k, element).good() || |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
879 element == NULL) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
880 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
881 return false; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
882 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
883 |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
884 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
885 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
886 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
887 std::set<DicomTag> tmp; |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
888 std::unique_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
|
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
889 (*element, DicomToJsonFlags_Default, |
|
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
890 0, encoding, hasCodeExtensions, tmp)); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
891 |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
892 if (v.get() == NULL || |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
893 v->IsNull()) |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
894 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
895 value = ""; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
896 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
897 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
898 { |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
899 // TODO v->IsBinary() |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
900 value = v->GetContent(); |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
901 } |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
902 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
903 return true; |
| 790 | 904 } |
| 905 } | |
| 906 | |
| 907 | |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
908 DicomInstanceHasher ParsedDicomFile::GetHasher() const |
| 790 | 909 { |
| 910 std::string patientId, studyUid, seriesUid, instanceUid; | |
| 911 | |
|
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
912 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID)) |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
913 { |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
914 /** |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
915 * If "PatientID" is absent, be tolerant by considering it |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
916 * equals the empty string, then proceed. In Orthanc <= 1.5.6, |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
917 * an exception "Bad file format" was generated. |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
918 * https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
| 3853 | 919 * https://hg.orthanc-server.com/orthanc/rev/4c45e018bd3de3cfa21d6efc6734673aaaee4435 |
|
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
920 **/ |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
921 patientId.clear(); |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
922 } |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
923 |
|
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
924 if (!GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) || |
| 790 | 925 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) || |
| 926 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID)) | |
| 927 { | |
|
3446
52da6e9335dd
Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3430
diff
changeset
|
928 throw OrthancException(ErrorCode_BadFileFormat, "missing StudyInstanceUID, SeriesInstanceUID or SOPInstanceUID"); |
| 790 | 929 } |
| 930 | |
| 931 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid); | |
| 932 } | |
| 933 | |
| 934 | |
| 935 void ParsedDicomFile::SaveToMemoryBuffer(std::string& buffer) | |
| 936 { | |
|
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
937 if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer, *GetDcmtkObject().getDataset())) |
|
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
938 { |
|
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
939 throw OrthancException(ErrorCode_InternalError, "Cannot write DICOM file to memory"); |
|
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
940 } |
| 790 | 941 } |
| 942 | |
| 943 | |
|
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
944 #if ORTHANC_SANDBOXED == 0 |
| 790 | 945 void ParsedDicomFile::SaveToFile(const std::string& path) |
| 946 { | |
| 947 // TODO Avoid using a temporary memory buffer, write directly on disk | |
| 948 std::string content; | |
| 949 SaveToMemoryBuffer(content); | |
| 2140 | 950 SystemToolbox::WriteFile(content, path); |
| 790 | 951 } |
|
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
952 #endif |
| 790 | 953 |
| 954 | |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
955 ParsedDicomFile::ParsedDicomFile(bool createIdentifiers) : pimpl_(new PImpl) |
| 790 | 956 { |
| 794 | 957 pimpl_->file_.reset(new DcmFileFormat); |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
958 |
|
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
959 if (createIdentifiers) |
|
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
960 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
961 ReplacePlainString(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
962 ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
963 ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
964 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
965 } |
| 790 | 966 } |
| 967 | |
| 791 | 968 |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
969 void ParsedDicomFile::CreateFromDicomMap(const DicomMap& source, |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
970 Encoding defaultEncoding, |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
971 bool permissive, |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
972 const std::string& defaultPrivateCreator, |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
973 const std::map<uint16_t, std::string>& privateCreators) |
|
1786
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
974 { |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
975 pimpl_->file_.reset(new DcmFileFormat); |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
976 InvalidateCache(); |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
977 |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
978 const DicomValue* tmp = source.TestAndGetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET); |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
979 |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
980 if (tmp == NULL) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
981 { |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
982 SetEncoding(defaultEncoding); |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
983 } |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
984 else if (tmp->IsBinary()) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
985 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
986 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
987 "Invalid binary string in the SpecificCharacterSet (0008,0005) tag"); |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
988 } |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
989 else if (tmp->IsNull() || |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
990 tmp->GetContent().empty()) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
991 { |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
992 SetEncoding(defaultEncoding); |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
993 } |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
994 else |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
995 { |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
996 Encoding encoding; |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
997 |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
998 if (GetDicomEncoding(encoding, tmp->GetContent().c_str())) |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
999 { |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1000 SetEncoding(encoding); |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1001 } |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1002 else |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1003 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1004 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1005 "Unsupported value for the SpecificCharacterSet (0008,0005) tag: \"" + |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1006 tmp->GetContent() + "\""); |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1007 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1008 } |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1009 |
|
3651
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1010 for (DicomMap::Content::const_iterator |
|
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1011 it = source.content_.begin(); it != source.content_.end(); ++it) |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1012 { |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1013 if (it->first != DICOM_TAG_SPECIFIC_CHARACTER_SET && |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1014 !it->second->IsNull()) |
|
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1015 { |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1016 try |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1017 { |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1018 // Same as "ReplacePlainString()", but with support for private creator |
|
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1019 const std::string& utf8Value = it->second->GetContent(); |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1020 |
| 4039 | 1021 std::map<uint16_t, std::string>::const_iterator found = privateCreators.find(it->first.GetGroup()); |
| 1022 | |
| 1023 if (it->first.IsPrivate() && | |
| 1024 found != privateCreators.end()) | |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1025 { |
| 4039 | 1026 Replace(it->first, utf8Value, false, DicomReplaceMode_InsertIfAbsent, found->second); |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1027 } |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1028 else |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1029 { |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1030 Replace(it->first, utf8Value, false, DicomReplaceMode_InsertIfAbsent, defaultPrivateCreator); |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1031 } |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1032 } |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1033 catch (OrthancException&) |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1034 { |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1035 if (!permissive) |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1036 { |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1037 throw; |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1038 } |
|
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1039 } |
|
2846
d386abc18133
simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2797
diff
changeset
|
1040 } |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1041 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1042 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1043 |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1044 ParsedDicomFile::ParsedDicomFile(const DicomMap& map, |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1045 Encoding defaultEncoding, |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1046 bool permissive) : |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1047 pimpl_(new PImpl) |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1048 { |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1049 std::map<uint16_t, std::string> noPrivateCreators; |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1050 CreateFromDicomMap(map, defaultEncoding, permissive, "" /* no default private creator */, noPrivateCreators); |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1051 } |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1052 |
|
1787
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
1053 |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1054 ParsedDicomFile::ParsedDicomFile(const DicomMap& map, |
|
3276
9b0e67161600
More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3217
diff
changeset
|
1055 Encoding defaultEncoding, |
|
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3948
diff
changeset
|
1056 bool permissive, |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1057 const std::string& defaultPrivateCreator, |
|
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1058 const std::map<uint16_t, std::string>& privateCreators) : |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1059 pimpl_(new PImpl) |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1060 { |
|
4035
cc6ed76bba27
added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
4013
diff
changeset
|
1061 CreateFromDicomMap(map, defaultEncoding, permissive, defaultPrivateCreator, privateCreators); |
|
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1062 } |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1063 |
|
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
1064 |
|
1800
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
1065 ParsedDicomFile::ParsedDicomFile(const void* content, |
|
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
1066 size_t size) : pimpl_(new PImpl) |
| 791 | 1067 { |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1068 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(content, size)); |
| 791 | 1069 } |
| 1070 | |
| 794 | 1071 ParsedDicomFile::ParsedDicomFile(const std::string& content) : pimpl_(new PImpl) |
| 791 | 1072 { |
| 1073 if (content.size() == 0) | |
| 1074 { | |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1075 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(NULL, 0)); |
| 791 | 1076 } |
| 1077 else | |
| 1078 { | |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1079 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(&content[0], content.size())); |
| 791 | 1080 } |
| 1081 } | |
| 792 | 1082 |
| 1083 | |
| 4200 | 1084 ParsedDicomFile::ParsedDicomFile(const ParsedDicomFile& other, |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1085 bool keepSopInstanceUid) : |
| 794 | 1086 pimpl_(new PImpl) |
| 792 | 1087 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1088 pimpl_->file_.reset(dynamic_cast<DcmFileFormat*>(other.GetDcmtkObjectConst().clone())); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1089 |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1090 if (!keepSopInstanceUid) |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1091 { |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1092 // Create a new instance-level identifier |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1093 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
|
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1094 } |
| 792 | 1095 } |
| 1096 | |
| 1097 | |
|
1788
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1098 ParsedDicomFile::ParsedDicomFile(DcmDataset& dicom) : pimpl_(new PImpl) |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1099 { |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1100 pimpl_->file_.reset(new DcmFileFormat(&dicom)); |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1101 } |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1102 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1103 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1104 ParsedDicomFile::ParsedDicomFile(DcmFileFormat& dicom) : pimpl_(new PImpl) |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1105 { |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1106 pimpl_->file_.reset(new DcmFileFormat(dicom)); |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1107 } |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1108 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
1109 |
|
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1110 ParsedDicomFile::ParsedDicomFile(DcmFileFormat* dicom) : pimpl_(new PImpl) |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1111 { |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1112 pimpl_->file_.reset(dicom); // No cloning |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1113 } |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1114 |
|
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3901
diff
changeset
|
1115 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1116 DcmFileFormat& ParsedDicomFile::GetDcmtkObjectConst() const |
| 793 | 1117 { |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1118 if (pimpl_->file_.get() == NULL) |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1119 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1120 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1121 "ReleaseDcmtkObject() was called"); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1122 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1123 else |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1124 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1125 return *pimpl_->file_; |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1126 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1127 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1128 |
| 4297 | 1129 ParsedDicomFile *ParsedDicomFile::AcquireDcmtkObject(DcmFileFormat *dicom) // No clone here |
|
4296
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1130 { |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1131 return new ParsedDicomFile(dicom); |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1132 } |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1133 |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1134 DcmFileFormat &ParsedDicomFile::GetDcmtkObject() |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1135 { |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1136 return GetDcmtkObjectConst(); |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1137 } |
|
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1138 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1139 |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1140 DcmFileFormat* ParsedDicomFile::ReleaseDcmtkObject() |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1141 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1142 if (pimpl_->file_.get() == NULL) |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1143 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1144 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1145 "ReleaseDcmtkObject() was called"); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1146 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1147 else |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1148 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1149 pimpl_->frameIndex_.reset(NULL); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1150 return pimpl_->file_.release(); |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1151 } |
| 793 | 1152 } |
| 1153 | |
| 1154 | |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1155 ParsedDicomFile* ParsedDicomFile::Clone(bool keepSopInstanceUid) const |
| 793 | 1156 { |
|
2521
6db878376018
support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2512
diff
changeset
|
1157 return new ParsedDicomFile(*this, keepSopInstanceUid); |
| 793 | 1158 } |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1159 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1160 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1161 bool ParsedDicomFile::EmbedContentInternal(const std::string& dataUriScheme) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1162 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1163 std::string mimeString, content; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1164 if (!Toolbox::DecodeDataUriScheme(mimeString, content, dataUriScheme)) |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1165 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1166 return false; |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1167 } |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1168 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1169 Toolbox::ToLowerCase(mimeString); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1170 MimeType mime = StringToMimeType(mimeString); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1171 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1172 switch (mime) |
| 1562 | 1173 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1174 case MimeType_Png: |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1175 #if ORTHANC_ENABLE_PNG == 1 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1176 EmbedImage(mime, content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1177 break; |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1178 #else |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1179 throw OrthancException(ErrorCode_NotImplemented, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1180 "Orthanc was compiled without support of PNG"); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1181 #endif |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1182 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1183 case MimeType_Jpeg: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1184 #if ORTHANC_ENABLE_JPEG == 1 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1185 EmbedImage(mime, content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1186 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1187 #else |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1188 throw OrthancException(ErrorCode_NotImplemented, |
|
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1189 "Orthanc was compiled without support of JPEG"); |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2310
diff
changeset
|
1190 #endif |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1191 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1192 case MimeType_Pam: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1193 EmbedImage(mime, content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1194 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1195 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1196 case MimeType_Pdf: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1197 EmbedPdf(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1198 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1199 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1200 default: |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1201 throw OrthancException(ErrorCode_NotImplemented, |
| 2989 | 1202 "Unsupported MIME type for the content of a new DICOM file: " + |
| 1203 std::string(EnumerationToString(mime))); | |
| 1562 | 1204 } |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1205 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1206 return true; |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1207 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1208 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1209 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1210 void ParsedDicomFile::EmbedContent(const std::string& dataUriScheme) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1211 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1212 if (!EmbedContentInternal(dataUriScheme)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1213 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1214 throw OrthancException(ErrorCode_BadFileFormat); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1215 } |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1216 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1217 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1218 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1219 void ParsedDicomFile::EmbedImage(MimeType mime, |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1220 const std::string& content) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1221 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1222 switch (mime) |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1223 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1224 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1225 #if ORTHANC_ENABLE_JPEG == 1 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1226 case MimeType_Jpeg: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1227 { |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1228 JpegReader reader; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1229 reader.ReadFromMemory(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1230 EmbedImage(reader); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1231 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1232 } |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1233 #endif |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1234 |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1235 #if ORTHANC_ENABLE_PNG == 1 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1236 case MimeType_Png: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1237 { |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1238 PngReader reader; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1239 reader.ReadFromMemory(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1240 EmbedImage(reader); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1241 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1242 } |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1243 #endif |
|
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1244 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1245 case MimeType_Pam: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1246 { |
|
4211
afad57ac30ef
enforcing parameter "enforceAligned" in PamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4203
diff
changeset
|
1247 // "true" means "enforce memory alignment": This is slower, |
|
afad57ac30ef
enforcing parameter "enforceAligned" in PamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4203
diff
changeset
|
1248 // but possibly avoids crash related to non-aligned memory access |
|
afad57ac30ef
enforcing parameter "enforceAligned" in PamReader
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4203
diff
changeset
|
1249 PamReader reader(true); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1250 reader.ReadFromMemory(content); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1251 EmbedImage(reader); |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1252 break; |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1253 } |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1254 |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1255 default: |
|
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1256 throw OrthancException(ErrorCode_NotImplemented); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1257 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1258 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1259 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1260 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1261 void ParsedDicomFile::EmbedImage(const ImageAccessor& accessor) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1262 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1263 if (accessor.GetFormat() != PixelFormat_Grayscale8 && |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1264 accessor.GetFormat() != PixelFormat_Grayscale16 && |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1265 accessor.GetFormat() != PixelFormat_SignedGrayscale16 && |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1266 accessor.GetFormat() != PixelFormat_RGB24 && |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1267 accessor.GetFormat() != PixelFormat_RGBA32) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1268 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1269 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1270 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1271 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1272 InvalidateCache(); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1273 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1274 if (accessor.GetFormat() == PixelFormat_RGBA32) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1275 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1276 LOG(WARNING) << "Getting rid of the alpha channel when embedding a RGBA image inside DICOM"; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1277 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1278 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1279 // http://dicomiseasy.blogspot.be/2012/08/chapter-12-pixel-data.html |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1280 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1281 Remove(DICOM_TAG_PIXEL_DATA); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1282 ReplacePlainString(DICOM_TAG_COLUMNS, boost::lexical_cast<std::string>(accessor.GetWidth())); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1283 ReplacePlainString(DICOM_TAG_ROWS, boost::lexical_cast<std::string>(accessor.GetHeight())); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1284 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "1"); |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1285 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1286 // The "Number of frames" must only be present in multi-frame images |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1287 //ReplacePlainString(DICOM_TAG_NUMBER_OF_FRAMES, "1"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1288 |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1289 if (accessor.GetFormat() == PixelFormat_SignedGrayscale16) |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1290 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1291 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "1"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1292 } |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1293 else |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1294 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1295 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "0"); // Unsigned pixels |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1296 } |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1297 |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1298 unsigned int bytesPerPixel = 0; |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1299 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1300 switch (accessor.GetFormat()) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1301 { |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1302 case PixelFormat_Grayscale8: |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1303 // By default, grayscale images are MONOCHROME2 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1304 SetIfAbsent(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1305 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1306 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1307 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1308 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1309 bytesPerPixel = 1; |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1310 break; |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1311 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1312 case PixelFormat_RGB24: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1313 case PixelFormat_RGBA32: |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1314 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1315 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "3"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1316 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1317 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1318 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1319 bytesPerPixel = 3; |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1320 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1321 // "Planar configuration" must only present if "Samples per |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1322 // Pixel" is greater than 1 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1323 ReplacePlainString(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1324 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1325 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1326 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1327 case PixelFormat_Grayscale16: |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1328 case PixelFormat_SignedGrayscale16: |
|
2910
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1329 // By default, grayscale images are MONOCHROME2 |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1330 SetIfAbsent(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
|
83133583183d
minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2908
diff
changeset
|
1331 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1332 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "16"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1333 ReplacePlainString(DICOM_TAG_BITS_STORED, "16"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1334 ReplacePlainString(DICOM_TAG_HIGH_BIT, "15"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1335 bytesPerPixel = 2; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1336 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1337 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1338 default: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1339 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1340 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1341 |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1342 assert(bytesPerPixel != 0); |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1343 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1344 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(), |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1345 DICOM_TAG_PIXEL_DATA.GetElement()); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1346 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1347 std::unique_ptr<DcmPixelData> pixels(new DcmPixelData(key)); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1348 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1349 unsigned int pitch = accessor.GetWidth() * bytesPerPixel; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1350 Uint8* target = NULL; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1351 pixels->createUint8Array(accessor.GetHeight() * pitch, target); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1352 |
|
4278
9279de56a405
avoid multiple calls to GetWidth() and GetHeight() on pixel loops
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4273
diff
changeset
|
1353 const unsigned int height = accessor.GetHeight(); |
|
9279de56a405
avoid multiple calls to GetWidth() and GetHeight() on pixel loops
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4273
diff
changeset
|
1354 const unsigned int width = accessor.GetWidth(); |
|
9279de56a405
avoid multiple calls to GetWidth() and GetHeight() on pixel loops
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4273
diff
changeset
|
1355 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1356 { |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1357 Uint8* q = target; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1358 for (unsigned int y = 0; y < height; y++) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1359 { |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1360 switch (accessor.GetFormat()) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1361 { |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1362 case PixelFormat_RGB24: |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1363 case PixelFormat_Grayscale8: |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1364 case PixelFormat_Grayscale16: |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1365 case PixelFormat_SignedGrayscale16: |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1366 { |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1367 memcpy(q, reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)), pitch); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1368 q += pitch; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1369 break; |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1370 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1371 |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1372 case PixelFormat_RGBA32: |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1373 { |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1374 // The alpha channel is not supported by the DICOM standard |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1375 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1376 for (unsigned int x = 0; x < width; x++, q += 3, source += 4) |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1377 { |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1378 q[0] = source[0]; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1379 q[1] = source[1]; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1380 q[2] = source[2]; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1381 } |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1382 |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1383 break; |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1384 } |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1385 |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1386 default: |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1387 throw OrthancException(ErrorCode_NotImplemented); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1388 } |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1389 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1390 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1391 |
|
4532
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1392 static const Endianness ENDIANNESS = Toolbox::DetectEndianness(); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1393 if (ENDIANNESS == Endianness_Big && |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1394 (accessor.GetFormat() == PixelFormat_Grayscale16 || |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1395 accessor.GetFormat() == PixelFormat_SignedGrayscale16)) |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1396 { |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1397 // New in Orthanc 1.9.1 |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1398 assert(pitch % 2 == 0); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1399 swapBytes(target, accessor.GetHeight() * pitch, sizeof(uint16_t)); |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1400 } |
|
11bfea08341a
fix ParsedDicomImage::EmbedImage() on big-endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4508
diff
changeset
|
1401 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1402 if (!GetDcmtkObject().getDataset()->insert(pixels.release(), false, false).good()) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1403 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1404 throw OrthancException(ErrorCode_InternalError); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1405 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1406 } |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
853
diff
changeset
|
1407 |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
853
diff
changeset
|
1408 |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1409 Encoding ParsedDicomFile::DetectEncoding(bool& hasCodeExtensions) const |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1410 { |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1411 return FromDcmtkBridge::DetectEncoding(hasCodeExtensions, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1412 *GetDcmtkObjectConst().getDataset(), |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
1413 GetDefaultDicomEncoding()); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1414 } |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1415 |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1416 |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1417 void ParsedDicomFile::SetEncoding(Encoding encoding) |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1418 { |
|
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1419 if (encoding == Encoding_Windows1251) |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1420 { |
|
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1421 // This Cyrillic codepage is not officially supported by the |
|
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1422 // DICOM standard. Do not set the SpecificCharacterSet tag. |
|
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1423 return; |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1424 } |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1425 |
|
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
1426 std::string s = GetDicomSpecificCharacterSet(encoding); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1427 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, s); |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1428 } |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1429 |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1430 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1431 DicomToJsonFormat format, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1432 DicomToJsonFlags flags, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1433 unsigned int maxStringLength) const |
|
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1113
diff
changeset
|
1434 { |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1435 std::set<DicomTag> ignoreTagLength; |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1436 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObjectConst().getDataset(), |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
1437 format, flags, maxStringLength, ignoreTagLength); |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1438 } |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1439 |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1440 |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1441 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1442 DicomToJsonFormat format, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1443 DicomToJsonFlags flags, |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1444 unsigned int maxStringLength, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1445 const std::set<DicomTag>& ignoreTagLength) const |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2394
diff
changeset
|
1446 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1447 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObjectConst().getDataset(), |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
1448 format, flags, maxStringLength, ignoreTagLength); |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1449 } |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1450 |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1451 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1452 void ParsedDicomFile::HeaderToJson(Json::Value& target, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1453 DicomToJsonFormat format) const |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1454 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1455 FromDcmtkBridge::ExtractHeaderAsJson(target, *GetDcmtkObjectConst().getMetaInfo(), format, DicomToJsonFlags_None, 0); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1456 } |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1457 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1458 |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1459 bool ParsedDicomFile::HasTag(const DicomTag& tag) const |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1460 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1461 DcmTag key(tag.GetGroup(), tag.GetElement()); |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1462 return GetDcmtkObjectConst().getDataset()->tagExists(key); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1463 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1464 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1465 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1466 void ParsedDicomFile::EmbedPdf(const std::string& pdf) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1467 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1468 if (pdf.size() < 5 || // (*) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1469 strncmp("%PDF-", pdf.c_str(), 5) != 0) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1470 { |
|
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2924
diff
changeset
|
1471 throw OrthancException(ErrorCode_BadFileFormat, "Not a PDF file"); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1472 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1473 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1474 InvalidateCache(); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1475 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1476 ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, UID_EncapsulatedPDFStorage); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1477 ReplacePlainString(FromDcmtkBridge::Convert(DCM_Modality), "OT"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1478 ReplacePlainString(FromDcmtkBridge::Convert(DCM_ConversionType), "WSD"); |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1479 ReplacePlainString(FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument), MIME_PDF); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1480 //ReplacePlainString(FromDcmtkBridge::Convert(DCM_SeriesNumber), "1"); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1481 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1482 std::unique_ptr<DcmPolymorphOBOW> element(new DcmPolymorphOBOW(DCM_EncapsulatedDocument)); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1483 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1484 size_t s = pdf.size(); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1485 if (s & 1) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1486 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1487 // The size of the buffer must be even |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1488 s += 1; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1489 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1490 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1491 Uint8* bytes = NULL; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1492 OFCondition result = element->createUint8Array(s, bytes); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1493 if (!result.good() || bytes == NULL) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1494 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1495 throw OrthancException(ErrorCode_NotEnoughMemory); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1496 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1497 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1498 // Blank pad byte (no access violation, as "pdf.size() >= 5" because of (*) ) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1499 bytes[s - 1] = 0; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1500 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1501 memcpy(bytes, pdf.c_str(), pdf.size()); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1502 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1503 DcmPolymorphOBOW* obj = element.release(); |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1504 result = GetDcmtkObject().getDataset()->insert(obj); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1505 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1506 if (!result.good()) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1507 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1508 delete obj; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1509 throw OrthancException(ErrorCode_NotEnoughMemory); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1510 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1511 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1512 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1513 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1514 bool ParsedDicomFile::ExtractPdf(std::string& pdf) const |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1515 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1516 std::string sop, mime; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1517 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1518 if (!GetTagValue(sop, DICOM_TAG_SOP_CLASS_UID) || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1519 !GetTagValue(mime, FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument)) || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1520 sop != UID_EncapsulatedPDFStorage || |
|
2905
ae20fccdd867
refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2889
diff
changeset
|
1521 mime != MIME_PDF) |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1522 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1523 return false; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1524 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1525 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1526 if (!GetTagValue(pdf, DICOM_TAG_ENCAPSULATED_DOCUMENT)) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1527 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1528 return false; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1529 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1530 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1531 // Strip the possible pad byte at the end of file, because the |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1532 // encapsulated documents must always have an even length. The PDF |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1533 // format expects files to end with %%EOF followed by CR/LF. If |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1534 // the last character of the file is not a CR or LF, we assume it |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1535 // is a pad byte and remove it. |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1536 if (pdf.size() > 0) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1537 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1538 char last = *pdf.rbegin(); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1539 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1540 if (last != 10 && last != 13) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1541 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1542 pdf.resize(pdf.size() - 1); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1543 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1544 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1545 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1546 return true; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1547 } |
|
1662
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1548 |
|
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1549 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1550 ParsedDicomFile* ParsedDicomFile::CreateFromJson(const Json::Value& json, |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1551 DicomFromJsonFlags flags, |
|
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1552 const std::string& privateCreator) |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1553 { |
|
2445
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1554 const bool generateIdentifiers = (flags & DicomFromJsonFlags_GenerateIdentifiers) ? true : false; |
|
6e5bc5c6d1a4
Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2409
diff
changeset
|
1555 const bool decodeDataUriScheme = (flags & DicomFromJsonFlags_DecodeDataUriScheme) ? true : false; |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1556 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1557 std::unique_ptr<ParsedDicomFile> result(new ParsedDicomFile(generateIdentifiers)); |
|
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2380
diff
changeset
|
1558 result->SetEncoding(FromDcmtkBridge::ExtractEncoding(json, GetDefaultDicomEncoding())); |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1559 |
|
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
1560 const Json::Value::Members tags = json.getMemberNames(); |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1929
diff
changeset
|
1561 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1562 for (size_t i = 0; i < tags.size(); i++) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1563 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1564 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1565 const Json::Value& value = json[tags[i]]; |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1566 |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1567 if (tag == DICOM_TAG_PIXEL_DATA || |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1568 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1569 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1570 if (value.type() != Json::stringValue) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1571 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1572 throw OrthancException(ErrorCode_BadRequest); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1573 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1574 else |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1575 { |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1576 result->EmbedContent(value.asString()); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1577 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1578 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1579 else if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1580 { |
|
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1581 result->Replace(tag, value, decodeDataUriScheme, DicomReplaceMode_InsertIfAbsent, privateCreator); |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1582 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1583 } |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1584 |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1585 return result.release(); |
|
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
1586 } |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1587 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1588 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1589 void ParsedDicomFile::GetRawFrame(std::string& target, |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1590 MimeType& mime, |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1591 unsigned int frameId) const |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1592 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1593 if (pimpl_->frameIndex_.get() == NULL) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1594 { |
|
3745
113a7b994a12
extracting the raw frame in the transcoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
1595 assert(pimpl_->file_ != NULL && |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1596 GetDcmtkObjectConst().getDataset() != NULL); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1597 pimpl_->frameIndex_.reset(new DicomFrameIndex(*GetDcmtkObjectConst().getDataset())); |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1598 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1599 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1600 pimpl_->frameIndex_->GetRawFrame(target, frameId); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1601 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1602 E_TransferSyntax transferSyntax = GetDcmtkObjectConst().getDataset()->getCurrentXfer(); |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1603 switch (transferSyntax) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1604 { |
|
1946
40b7a0176305
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1945
diff
changeset
|
1605 case EXS_JPEGProcess1: |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1606 mime = MimeType_Jpeg; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1607 break; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1608 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1609 case EXS_JPEG2000LosslessOnly: |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1610 case EXS_JPEG2000: |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1611 mime = MimeType_Jpeg2000; |
| 2016 | 1612 break; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1613 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1614 default: |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1615 mime = MimeType_Binary; |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1616 break; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1617 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1618 } |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1619 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1620 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1621 void ParsedDicomFile::InvalidateCache() |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1622 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1623 pimpl_->frameIndex_.reset(NULL); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1913
diff
changeset
|
1624 } |
|
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1625 |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1626 |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1627 unsigned int ParsedDicomFile::GetFramesCount() const |
|
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1628 { |
|
3745
113a7b994a12
extracting the raw frame in the transcoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
1629 assert(pimpl_->file_ != NULL && |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1630 GetDcmtkObjectConst().getDataset() != NULL); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1631 return DicomFrameIndex::GetFramesCount(*GetDcmtkObjectConst().getDataset()); |
|
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1632 } |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1633 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1634 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1635 void ParsedDicomFile::ChangeEncoding(Encoding target) |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1636 { |
|
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1637 bool hasCodeExtensions; |
|
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3060
diff
changeset
|
1638 Encoding source = DetectEncoding(hasCodeExtensions); |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1639 |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1640 if (source != target) // Avoid unnecessary conversion |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1641 { |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1642 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, GetDicomSpecificCharacterSet(target)); |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3912
diff
changeset
|
1643 FromDcmtkBridge::ChangeStringEncoding(*GetDcmtkObject().getDataset(), source, hasCodeExtensions, target); |
|
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1644 } |
|
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
changeset
|
1645 } |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1646 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1647 |
|
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1648 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target, |
|
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1649 unsigned int maxTagLength) const |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1650 { |
|
4137
6774605d4341
keep only one signature for FromDcmtkBridge::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4136
diff
changeset
|
1651 std::set<DicomTag> ignoreTagLength; |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1652 FromDcmtkBridge::ExtractDicomSummary(target, *GetDcmtkObjectConst().getDataset(), |
|
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1653 maxTagLength, ignoreTagLength); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1654 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1655 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1656 |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1657 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target, |
|
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1658 unsigned int maxTagLength, |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1659 const std::set<DicomTag>& ignoreTagLength) const |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1660 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1661 FromDcmtkBridge::ExtractDicomSummary(target, *GetDcmtkObjectConst().getDataset(), |
|
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4137
diff
changeset
|
1662 maxTagLength, ignoreTagLength); |
|
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1663 } |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1664 |
|
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3446
diff
changeset
|
1665 |
|
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1666 bool ParsedDicomFile::LookupTransferSyntax(DicomTransferSyntax& result) const |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1667 { |
|
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1668 return FromDcmtkBridge::LookupOrthancTransferSyntax(result, GetDcmtkObjectConst()); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
1669 } |
|
2281
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1670 |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1671 |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1672 bool ParsedDicomFile::LookupPhotometricInterpretation(PhotometricInterpretation& result) const |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1673 { |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1674 DcmTagKey k(DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetGroup(), |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1675 DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetElement()); |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1676 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1677 DcmDataset& dataset = *GetDcmtkObjectConst().getDataset(); |
|
2281
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1678 |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1679 const char *c = NULL; |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1680 if (dataset.findAndGetString(k, c).good() && |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1681 c != NULL) |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1682 { |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1683 result = StringToPhotometricInterpretation(c); |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1684 return true; |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1685 } |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1686 else |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1687 { |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1688 return false; |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1689 } |
|
e002430baa41
Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1690 } |
|
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1691 |
|
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1692 |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1693 void ParsedDicomFile::Apply(ITagVisitor& visitor) const |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1694 { |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1695 FromDcmtkBridge::Apply(*GetDcmtkObjectConst().getDataset(), visitor, GetDefaultDicomEncoding()); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1696 } |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1697 |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1698 |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1699 ImageAccessor* ParsedDicomFile::DecodeFrame(unsigned int frame) const |
|
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1700 { |
|
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1701 if (GetDcmtkObjectConst().getDataset() == NULL) |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1702 { |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1703 throw OrthancException(ErrorCode_InternalError); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1704 } |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1705 else |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1706 { |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1707 return DicomImageDecoder::Decode(*GetDcmtkObjectConst().getDataset(), frame); |
|
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4200
diff
changeset
|
1708 } |
|
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
1709 } |
|
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1710 |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1711 |
|
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1712 static bool HasGenericGroupLength(const DicomPath& path) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1713 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1714 for (size_t i = 0; i < path.GetPrefixLength(); i++) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1715 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1716 if (path.GetPrefixTag(i).GetElement() == 0x0000) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1717 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1718 return true; |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1719 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1720 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1721 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1722 return (path.GetFinalTag().GetElement() == 0x0000); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1723 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1724 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1725 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1726 void ParsedDicomFile::ReplacePath(const DicomPath& path, |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1727 const Json::Value& value, |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1728 bool decodeDataUriScheme, |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1729 DicomReplaceMode mode, |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1730 const std::string& privateCreator) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1731 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1732 if (HasGenericGroupLength(path)) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1733 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1734 // Prevent manually modifying generic group length tags: This is |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1735 // handled by DCMTK serialization |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1736 return; |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1737 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1738 else if (path.GetPrefixLength() == 0) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1739 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1740 Replace(path.GetFinalTag(), value, decodeDataUriScheme, mode, privateCreator); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1741 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1742 else |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1743 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1744 InvalidateCache(); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1745 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1746 bool hasCodeExtensions; |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1747 Encoding encoding = DetectEncoding(hasCodeExtensions); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1748 std::unique_ptr<DcmElement> element( |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1749 FromDcmtkBridge::FromJson(path.GetFinalTag(), value, decodeDataUriScheme, encoding, privateCreator)); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1750 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1751 FromDcmtkBridge::ReplacePath(*GetDcmtkObject().getDataset(), path, *element, mode); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1752 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1753 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1754 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1755 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1756 void ParsedDicomFile::RemovePath(const DicomPath& path) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1757 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1758 InvalidateCache(); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1759 FromDcmtkBridge::RemovePath(*GetDcmtkObject().getDataset(), path); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1760 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1761 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1762 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1763 void ParsedDicomFile::ClearPath(const DicomPath& path, |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1764 bool onlyIfExists) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1765 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1766 if (HasGenericGroupLength(path)) |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1767 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1768 // Prevent manually modifying generic group length tags: This is |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1769 // handled by DCMTK serialization |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1770 return; |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1771 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1772 else |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1773 { |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1774 InvalidateCache(); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1775 FromDcmtkBridge::ClearPath(*GetDcmtkObject().getDataset(), path, onlyIfExists); |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1776 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1777 } |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1778 |
|
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4588
diff
changeset
|
1779 |
|
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1780 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1 |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1781 // Alias for binary compatibility with Orthanc Framework 1.7.2 => don't use it anymore |
|
4296
3b70a2e6a06c
moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4278
diff
changeset
|
1782 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1783 DicomToJsonFormat format, |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1784 DicomToJsonFlags flags, |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1785 unsigned int maxStringLength) |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1786 { |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1787 return const_cast<const ParsedDicomFile&>(*this).DatasetToJson(target, format, flags, maxStringLength); |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1788 } |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1789 |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1790 DcmFileFormat& ParsedDicomFile::GetDcmtkObject() const |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1791 { |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1792 return const_cast<ParsedDicomFile&>(*this).GetDcmtkObject(); |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1793 } |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1794 |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1795 void ParsedDicomFile::Apply(ITagVisitor& visitor) |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1796 { |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1797 const_cast<const ParsedDicomFile&>(*this).Apply(visitor); |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1798 } |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1799 |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1800 ParsedDicomFile* ParsedDicomFile::Clone(bool keepSopInstanceUid) |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1801 { |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1802 return const_cast<const ParsedDicomFile&>(*this).Clone(keepSopInstanceUid); |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1803 } |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1804 |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1805 bool ParsedDicomFile::LookupTransferSyntax(std::string& result) |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1806 { |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1807 return const_cast<const ParsedDicomFile&>(*this).LookupTransferSyntax(result); |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1808 } |
|
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1809 |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1810 bool ParsedDicomFile::LookupTransferSyntax(std::string& result) const |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1811 { |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1812 DicomTransferSyntax s; |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1813 if (LookupTransferSyntax(s)) |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1814 { |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1815 result = GetTransferSyntaxUid(s); |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1816 return true; |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1817 } |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1818 else |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1819 { |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1820 return false; |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1821 } |
|
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1822 } |
|
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1823 |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1824 bool ParsedDicomFile::GetTagValue(std::string& value, |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1825 const DicomTag& tag) |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1826 { |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1827 return const_cast<const ParsedDicomFile&>(*this).GetTagValue(value, tag); |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1828 } |
|
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4211
diff
changeset
|
1829 #endif |
| 790 | 1830 } |