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annotate OrthancFramework/Sources/DicomParsing/DicomModification.h @ 4680:898e8ac8c453

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fix build of wsi and stone
author Sebastien Jodogne <s.jodogne@gmail.com>
date Sat, 05 Jun 2021 12:23:54 +0200
parents 2e850edf03d6
children e3810750dc9d
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #pragma once
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24
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25 #include "ParsedDicomFile.h"
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26
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27 #include <list>
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28
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29
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30 namespace Orthanc
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31 {
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32 class ORTHANC_PUBLIC DicomModification : public boost::noncopyable
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33 {
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34 /**
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35 * Process:
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36 * (1) Remove private tags
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37 * (2) Remove tags specified by the user
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38 * (3) Replace tags
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39 **/
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40
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41 public:
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42 enum TagOperation
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43 {
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44 TagOperation_Keep,
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45 TagOperation_Remove
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46 };
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47
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48 class IDicomIdentifierGenerator : public boost::noncopyable
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49 {
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50 public:
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51 virtual ~IDicomIdentifierGenerator()
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52 {
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53 }
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54
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55 virtual bool Apply(std::string& target,
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56 const std::string& sourceIdentifier,
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57 ResourceType level,
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58 const DicomMap& sourceDicom) = 0;
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59 };
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60
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61 private:
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62 class RelationshipsVisitor;
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63
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64 class DicomTagRange
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65 {
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66 private:
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67 uint16_t groupFrom_;
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68 uint16_t groupTo_;
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69 uint16_t elementFrom_;
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70 uint16_t elementTo_;
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71
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72 public:
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73 DicomTagRange(uint16_t groupFrom,
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74 uint16_t groupTo,
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75 uint16_t elementFrom,
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76 uint16_t elementTo);
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77
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78 uint16_t GetGroupFrom() const
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79 {
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80 return groupFrom_;
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81 }
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82
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83 uint16_t GetGroupTo() const
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84 {
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85 return groupTo_;
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86 }
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87
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88 uint16_t GetElementFrom() const
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89 {
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90 return elementFrom_;
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91 }
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92
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93 uint16_t GetElementTo() const
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94 {
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95 return elementTo_;
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96 }
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97
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98 bool Contains(const DicomTag& tag) const;
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99 };
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100
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101 typedef std::set<DicomTag> SetOfTags;
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102 typedef std::map<DicomTag, Json::Value*> Replacements;
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103 typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap;
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104 typedef std::list<DicomTagRange> RemovedRanges;
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105
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106 SetOfTags removals_;
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107 SetOfTags clearings_;
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108 Replacements replacements_;
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109 SetOfTags uids_; // New in Orthanc 1.9.4
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110 RemovedRanges removedRanges_; // New in Orthanc 1.9.4
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111 bool removePrivateTags_;
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112 ResourceType level_;
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113 UidMap uidMap_;
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114 SetOfTags privateTagsToKeep_;
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115 bool allowManualIdentifiers_;
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116 bool keepStudyInstanceUid_;
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117 bool keepSeriesInstanceUid_;
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118 bool keepSopInstanceUid_;
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119 bool updateReferencedRelationships_;
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120 bool isAnonymization_;
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121 DicomMap currentSource_;
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122 std::string privateCreator_;
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123
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124 IDicomIdentifierGenerator* identifierGenerator_;
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125
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126 std::string MapDicomIdentifier(const std::string& original,
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127 ResourceType level);
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128
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129 void RegisterMappedDicomIdentifier(const std::string& original,
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130 const std::string& mapped,
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131 ResourceType level);
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132
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133 void MapDicomTags(ParsedDicomFile& dicom,
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134 ResourceType level);
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135
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136 void MarkNotOrthancAnonymization();
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137
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138 void ClearReplacements();
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139
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140 bool CancelReplacement(const DicomTag& tag);
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141
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142 void ReplaceInternal(const DicomTag& tag,
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143 const Json::Value& value);
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144
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145 void SetupUidsFromOrthanc_1_9_3();
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146
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147 void SetupAnonymization2008();
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148
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149 void SetupAnonymization2017c();
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150
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151 void SetupAnonymization2021b();
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152
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153 void UnserializeUidMap(ResourceType level,
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154 const Json::Value& serialized,
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155 const char* field);
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156
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157 public:
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158 DicomModification();
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159
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160 explicit DicomModification(const Json::Value& serialized);
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161
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162 ~DicomModification();
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163
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164 void Keep(const DicomTag& tag);
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165
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166 void Remove(const DicomTag& tag);
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167
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168 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization)
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169 void Clear(const DicomTag& tag);
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170
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171 bool IsRemoved(const DicomTag& tag) const;
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172
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173 bool IsCleared(const DicomTag& tag) const;
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174
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175 // "safeForAnonymization" tells Orthanc that this replacement does
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176 // not break the anonymization process it implements (for internal use only)
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177 void Replace(const DicomTag& tag,
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178 const Json::Value& value, // Encoded using UTF-8
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179 bool safeForAnonymization);
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180
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181 bool IsReplaced(const DicomTag& tag) const;
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182
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183 const Json::Value& GetReplacement(const DicomTag& tag) const;
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184
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185 std::string GetReplacementAsString(const DicomTag& tag) const;
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186
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187 void SetRemovePrivateTags(bool removed);
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188
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189 bool ArePrivateTagsRemoved() const;
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190
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191 void SetLevel(ResourceType level);
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192
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193 ResourceType GetLevel() const;
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194
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195 void SetupAnonymization(DicomVersion version);
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196
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197 void Apply(ParsedDicomFile& toModify);
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198
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199 void SetAllowManualIdentifiers(bool check);
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200
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201 bool AreAllowManualIdentifiers() const;
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202
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203 void ParseModifyRequest(const Json::Value& request);
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204
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205 void ParseAnonymizationRequest(bool& patientNameReplaced,
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206 const Json::Value& request);
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207
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208 void SetDicomIdentifierGenerator(IDicomIdentifierGenerator& generator);
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209
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210 void Serialize(Json::Value& value) const;
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211
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212 void SetPrivateCreator(const std::string& privateCreator);
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213
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214 const std::string& GetPrivateCreator() const;
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215 };
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216 }