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annotate OrthancFramework/Sources/DicomParsing/DicomModification.cpp @ 5338:78c59b02b121

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accept parameters are now provided to HttpContentNegociation::IHandler::Handle()
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 28 Jun 2023 08:29:43 +0200
parents 5b2a5cc64cb1
children 59e3b6f8c5be
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "../PrecompiledHeaders.h"
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25 #include "DicomModification.h"
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26
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27 #include "../Compatibility.h"
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28 #include "../Logging.h"
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29 #include "../OrthancException.h"
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30 #include "../SerializationToolbox.h"
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31 #include "FromDcmtkBridge.h"
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32 #include "ITagVisitor.h"
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33
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34 #include <memory> // For std::unique_ptr
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35
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36
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37 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2008 =
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38 "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1";
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39
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40 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2017c =
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41 "Orthanc " ORTHANC_VERSION " - PS 3.15-2017c Table E.1-1 Basic Profile";
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42
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43 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2021b =
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44 "Orthanc " ORTHANC_VERSION " - PS 3.15-2021b Table E.1-1 Basic Profile";
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45
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46 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2023b =
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47 "Orthanc " ORTHANC_VERSION " - PS 3.15-2023b Table E.1-1 Basic Profile";
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48
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49 namespace Orthanc
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50 {
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51 namespace
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52 {
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53 enum TagOperation
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54 {
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55 TagOperation_Keep,
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56 TagOperation_Remove
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57 };
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58 }
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59
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60
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61 DicomModification::DicomTagRange::DicomTagRange(uint16_t groupFrom,
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62 uint16_t groupTo,
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63 uint16_t elementFrom,
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64 uint16_t elementTo) :
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65 groupFrom_(groupFrom),
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66 groupTo_(groupTo),
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67 elementFrom_(elementFrom),
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68 elementTo_(elementTo)
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69 {
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70 }
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71
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72
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73 bool DicomModification::DicomTagRange::Contains(const DicomTag& tag) const
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74 {
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75 return (tag.GetGroup() >= groupFrom_ &&
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76 tag.GetGroup() <= groupTo_ &&
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77 tag.GetElement() >= elementFrom_ &&
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78 tag.GetElement() <= elementTo_);
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79 }
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80
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81
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82 class DicomModification::RelationshipsVisitor : public ITagVisitor
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83 {
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84 private:
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85 DicomModification& that_;
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86
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87 // This method is only applicable to first-level tags
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88 bool IsManuallyModified(const DicomTag& tag) const
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89 {
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90 return (that_.IsCleared(tag) ||
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91 that_.IsRemoved(tag) ||
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92 that_.IsReplaced(tag));
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93 }
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94
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95 bool IsKeptSequence(const std::vector<DicomTag>& parentTags,
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96 const std::vector<size_t>& parentIndexes,
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97 const DicomTag& tag)
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98 {
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99 for (DicomModification::ListOfPaths::const_iterator
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100 it = that_.keepSequences_.begin(); it != that_.keepSequences_.end(); ++it)
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101 {
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102 if (DicomPath::IsMatch(*it, parentTags, parentIndexes, tag))
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103 {
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104 return true;
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105 }
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106 }
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107
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108 return false;
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109 }
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110
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111 Action GetDefaultAction(const std::vector<DicomTag>& parentTags,
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112 const std::vector<size_t>& parentIndexes,
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113 const DicomTag& tag)
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114 {
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115 if (parentTags.empty() ||
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116 !that_.isAnonymization_)
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117 {
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118 // Don't interfere with first-level tags or with modification
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119 return Action_None;
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120 }
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121 else if (IsKeptSequence(parentTags, parentIndexes, tag))
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122 {
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123 return Action_None;
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124 }
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125 else if (that_.ArePrivateTagsRemoved() &&
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126 tag.IsPrivate())
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127 {
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128 // New in Orthanc 1.9.5
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129 // https://groups.google.com/g/orthanc-users/c/l1mcYCC2u-k/m/jOdGYuagAgAJ
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130 return Action_Remove;
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131 }
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132 else if (that_.IsCleared(tag) ||
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133 that_.IsRemoved(tag))
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134 {
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135 // New in Orthanc 1.9.5
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136 // https://groups.google.com/g/orthanc-users/c/l1mcYCC2u-k/m/jOdGYuagAgAJ
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137 return Action_Remove;
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138 }
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139 else
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140 {
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141 return Action_None;
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142 }
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143 }
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144
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145 public:
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146 explicit RelationshipsVisitor(DicomModification& that) :
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147 that_(that)
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148 {
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149 }
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150
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151 virtual Action VisitNotSupported(const std::vector<DicomTag>& parentTags,
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152 const std::vector<size_t>& parentIndexes,
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153 const DicomTag& tag,
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154 ValueRepresentation vr) ORTHANC_OVERRIDE
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155 {
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156 return GetDefaultAction(parentTags, parentIndexes, tag);
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157 }
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158
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159 virtual Action VisitSequence(const std::vector<DicomTag>& parentTags,
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160 const std::vector<size_t>& parentIndexes,
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161 const DicomTag& tag,
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162 size_t countItems) ORTHANC_OVERRIDE
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163 {
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164 return GetDefaultAction(parentTags, parentIndexes, tag);
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165 }
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166
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167 virtual Action VisitBinary(const std::vector<DicomTag>& parentTags,
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168 const std::vector<size_t>& parentIndexes,
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169 const DicomTag& tag,
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170 ValueRepresentation vr,
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171 const void* data,
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172 size_t size) ORTHANC_OVERRIDE
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173 {
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174 return GetDefaultAction(parentTags, parentIndexes, tag);
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175 }
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176
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177 virtual Action VisitIntegers(const std::vector<DicomTag>& parentTags,
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178 const std::vector<size_t>& parentIndexes,
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179 const DicomTag& tag,
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180 ValueRepresentation vr,
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181 const std::vector<int64_t>& values) ORTHANC_OVERRIDE
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182 {
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183 return GetDefaultAction(parentTags, parentIndexes, tag);
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184 }
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185
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186 virtual Action VisitDoubles(const std::vector<DicomTag>& parentTags,
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187 const std::vector<size_t>& parentIndexes,
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188 const DicomTag& tag,
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189 ValueRepresentation vr,
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190 const std::vector<double>& value) ORTHANC_OVERRIDE
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191 {
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192 return GetDefaultAction(parentTags, parentIndexes, tag);
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193 }
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194
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195 virtual Action VisitAttributes(const std::vector<DicomTag>& parentTags,
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196 const std::vector<size_t>& parentIndexes,
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197 const DicomTag& tag,
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198 const std::vector<DicomTag>& value) ORTHANC_OVERRIDE
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199 {
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200 return GetDefaultAction(parentTags, parentIndexes, tag);
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201 }
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202
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203 virtual Action VisitString(std::string& newValue,
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204 const std::vector<DicomTag>& parentTags,
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205 const std::vector<size_t>& parentIndexes,
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206 const DicomTag& tag,
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207 ValueRepresentation vr,
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208 const std::string& value) ORTHANC_OVERRIDE
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209 {
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210 /**
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211 * Note that all the tags in "uids_" have the VR UI (unique
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212 * identifier), and are considered as strings.
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213 *
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214 * Also, the tags "SOP Instance UID", "Series Instance UID" and
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215 * "Study Instance UID" are *never* included in "uids_", as they
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216 * are separately handed by "MapDicomTags()".
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217 **/
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218
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219 assert(that_.uids_.find(DICOM_TAG_STUDY_INSTANCE_UID) == that_.uids_.end());
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220 assert(that_.uids_.find(DICOM_TAG_SERIES_INSTANCE_UID) == that_.uids_.end());
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221 assert(that_.uids_.find(DICOM_TAG_SOP_INSTANCE_UID) == that_.uids_.end());
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222
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223 if (parentTags.empty())
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224 {
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225 // We are on a first-level tag
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226 if (that_.uids_.find(tag) != that_.uids_.end() &&
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227 !IsManuallyModified(tag))
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228 {
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229 if (tag == DICOM_TAG_PATIENT_ID ||
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230 tag == DICOM_TAG_PATIENT_NAME)
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231 {
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232 assert(vr == ValueRepresentation_LongString ||
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233 vr == ValueRepresentation_PersonName);
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234 newValue = that_.MapDicomIdentifier(value, ResourceType_Patient);
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235 }
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236 else
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237 {
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238 // This is a first-level UID tag that must be anonymized
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239 assert(vr == ValueRepresentation_UniqueIdentifier ||
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240 vr == ValueRepresentation_NotSupported /* for older versions of DCMTK */);
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241 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance);
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242 }
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243
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244 return Action_Replace;
4678
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245 }
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diff changeset
246 else
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diff changeset
247 {
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diff changeset
248 return Action_None;
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249 }
3344
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250 }
2506
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251 else
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diff changeset
252 {
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diff changeset
253 // We are within a sequence
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254
4737
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255 if (IsKeptSequence(parentTags, parentIndexes, tag))
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parents: 4684
diff changeset
256 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
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257 // New in Orthanc 1.9.4 - Solves issue LSD-629
4737
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diff changeset
258 return Action_None;
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259 }
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diff changeset
260
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
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diff changeset
261 if (that_.isAnonymization_)
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262 {
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diff changeset
263 // New in Orthanc 1.9.5, similar to "GetDefaultAction()"
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diff changeset
264 // https://groups.google.com/g/orthanc-users/c/l1mcYCC2u-k/m/jOdGYuagAgAJ
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diff changeset
265 if (that_.ArePrivateTagsRemoved() &&
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266 tag.IsPrivate())
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diff changeset
267 {
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268 return Action_Remove;
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269 }
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270 else if (that_.IsRemoved(tag))
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271 {
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272 return Action_Remove;
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273 }
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274 else if (that_.IsCleared(tag))
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275 {
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276 // This is different from "GetDefaultAction()", because we know how to clear string tags
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277 newValue.clear();
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278 return Action_Replace;
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279 }
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280 }
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281
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282 if (tag == DICOM_TAG_STUDY_INSTANCE_UID)
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283 {
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284 newValue = that_.MapDicomIdentifier(value, ResourceType_Study);
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285 return Action_Replace;
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diff changeset
286 }
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287 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID)
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288 {
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289 newValue = that_.MapDicomIdentifier(value, ResourceType_Series);
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290 return Action_Replace;
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diff changeset
291 }
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292 else if (tag == DICOM_TAG_SOP_INSTANCE_UID)
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293 {
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294 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance);
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295 return Action_Replace;
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296 }
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297 else if (that_.uids_.find(tag) != that_.uids_.end())
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diff changeset
298 {
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299 if (tag == DICOM_TAG_PATIENT_ID ||
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300 tag == DICOM_TAG_PATIENT_NAME)
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diff changeset
301 {
4693
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302 newValue = that_.MapDicomIdentifier(value, ResourceType_Patient);
4684
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diff changeset
303 }
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
304 else
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
305 {
4693
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diff changeset
306 assert(vr == ValueRepresentation_UniqueIdentifier ||
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diff changeset
307 vr == ValueRepresentation_NotSupported /* for older versions of DCMTK */);
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diff changeset
308
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parents: 4691
diff changeset
309 if (parentTags.size() == 2 &&
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parents: 4691
diff changeset
310 parentTags[0] == DICOM_TAG_REFERENCED_FRAME_OF_REFERENCE_SEQUENCE &&
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parents: 4691
diff changeset
311 parentTags[1] == DICOM_TAG_RT_REFERENCED_STUDY_SEQUENCE &&
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parents: 4691
diff changeset
312 tag == DICOM_TAG_REFERENCED_SOP_INSTANCE_UID)
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parents: 4691
diff changeset
313 {
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diff changeset
314 /**
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315 * In RT-STRUCT, this ReferencedSOPInstanceUID is actually
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diff changeset
316 * referencing a StudyInstanceUID !! (observed in many
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diff changeset
317 * data sets including:
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diff changeset
318 * https://wiki.cancerimagingarchive.net/display/Public/Lung+CT+Segmentation+Challenge+2017)
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diff changeset
319 * Tested in "test_anonymize_relationships_5". Introduced
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320 * in: https://hg.orthanc-server.com/orthanc/rev/3513
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diff changeset
321 **/
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diff changeset
322 newValue = that_.MapDicomIdentifier(value, ResourceType_Study);
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diff changeset
323 }
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4691
diff changeset
324 else
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
325 {
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diff changeset
326 newValue = that_.MapDicomIdentifier(value, ResourceType_Instance);
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parents: 4691
diff changeset
327 }
4684
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
328 }
e3810750dc9d simplified DicomModification::RelationshipsVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4678
diff changeset
329
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
330 return Action_Replace;
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
331 }
e3810750dc9d simplified DicomModification::RelationshipsVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4678
diff changeset
332 else
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
333 {
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
334 return Action_None;
e3810750dc9d simplified DicomModification::RelationshipsVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4678
diff changeset
335 }
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
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parents: 2447
diff changeset
336 }
51b91ead6c38 Preservation of UID relationships while anonymizing
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parents: 2447
diff changeset
337 }
51b91ead6c38 Preservation of UID relationships while anonymizing
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parents: 2447
diff changeset
338
51b91ead6c38 Preservation of UID relationships while anonymizing
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parents: 2447
diff changeset
339 void RemoveRelationships(ParsedDicomFile& dicom) const
51b91ead6c38 Preservation of UID relationships while anonymizing
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parents: 2447
diff changeset
340 {
4678
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diff changeset
341 for (SetOfTags::const_iterator it = that_.uids_.begin(); it != that_.uids_.end(); ++it)
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parents: 4677
diff changeset
342 {
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diff changeset
343 assert(*it != DICOM_TAG_STUDY_INSTANCE_UID &&
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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344 *it != DICOM_TAG_SERIES_INSTANCE_UID &&
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parents: 4678
diff changeset
345 *it != DICOM_TAG_SOP_INSTANCE_UID);
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parents: 4678
diff changeset
346
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
347 if (!IsManuallyModified(*it))
4678
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parents: 4677
diff changeset
348 {
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diff changeset
349 dicom.Remove(*it);
4678
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parents: 4677
diff changeset
350 }
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parents: 4677
diff changeset
351 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
352
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
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parents: 4677
diff changeset
353 // The only two sequences with to the "X/Z/U*" rule in the
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parents: 4677
diff changeset
354 // basic profile. They were already present in Orthanc 1.9.3.
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parents: 4678
diff changeset
355 if (!IsManuallyModified(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE))
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
356 {
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
357 dicom.Remove(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE);
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
358 }
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
359
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
360 if (!IsManuallyModified(DICOM_TAG_SOURCE_IMAGE_SEQUENCE))
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
361 {
e3810750dc9d simplified DicomModification::RelationshipsVisitor
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parents: 4678
diff changeset
362 dicom.Remove(DICOM_TAG_SOURCE_IMAGE_SEQUENCE);
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parents: 4678
diff changeset
363 }
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
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parents: 2447
diff changeset
364 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
365 };
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
366
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
367
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
368 void DicomModification::CancelReplacement(const DicomTag& tag)
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
369 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
370 Replacements::iterator it = replacements_.find(tag);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
371
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
372 if (it != replacements_.end())
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
373 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
374 assert(it->second != NULL);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
375 delete it->second;
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
376 replacements_.erase(it);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
377 }
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
378 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
379
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
380
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
381 void DicomModification::ReplaceInternal(const DicomTag& tag,
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
382 const Json::Value& value)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
383 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
384 Replacements::iterator it = replacements_.find(tag);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
385
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
386 if (it != replacements_.end())
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
387 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
388 assert(it->second != NULL);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
389 delete it->second;
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
390 it->second = NULL; // In the case of an exception during the clone
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
391 it->second = new Json::Value(value); // Clone
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
392 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
393 else
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
394 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
395 replacements_[tag] = new Json::Value(value); // Clone
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
396 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
397 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
398
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
399
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
400 void DicomModification::ClearReplacements()
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
401 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
402 for (Replacements::iterator it = replacements_.begin();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
403 it != replacements_.end(); ++it)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
404 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
405 assert(it->second != NULL);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
406 delete it->second;
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
407 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
408
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
409 replacements_.clear();
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
410
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
411 for (SequenceReplacements::iterator it = sequenceReplacements_.begin();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
412 it != sequenceReplacements_.end(); ++it)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
413 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
414 assert(*it != NULL);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
415 assert((*it)->GetPath().GetPrefixLength() > 0);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
416 delete *it;
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
417 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
418
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
419 sequenceReplacements_.clear();
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
420 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
421
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
422
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
423 void DicomModification::MarkNotOrthancAnonymization()
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
424 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
425 Replacements::iterator it = replacements_.find(DICOM_TAG_DEIDENTIFICATION_METHOD);
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
426
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
427 if (it != replacements_.end())
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
428 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
429 assert(it->second != NULL);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
430
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
431 if (it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2008 ||
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
432 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2017c ||
5334
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
433 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2021b ||
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
434 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2023b)
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
435 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
436 delete it->second;
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
437 replacements_.erase(it);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
438 }
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
439 }
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
440 }
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
441
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
442 void DicomModification::RegisterMappedDicomIdentifier(const std::string& original,
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
443 const std::string& mapped,
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
444 ResourceType level)
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
445 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
446 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, original));
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
447
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
448 if (previous == uidMap_.end())
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
449 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
450 uidMap_.insert(std::make_pair(std::make_pair(level, original), mapped));
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
451 }
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
452 }
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
453
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
454 std::string DicomModification::MapDicomIdentifier(const std::string& original,
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
455 ResourceType level)
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
456 {
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
457 const std::string stripped = Toolbox::StripSpaces(original);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
458
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
459 std::string mapped;
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
460
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
461 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, stripped));
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
462
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
463 if (previous == uidMap_.end())
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
464 {
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
465 if (identifierGenerator_ == NULL)
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
466 {
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
467 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level);
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
468 }
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
469 else
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
470 {
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
471 if (!identifierGenerator_->Apply(mapped, stripped, level, currentSource_))
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
472 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
473 throw OrthancException(ErrorCode_InternalError,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
474 "Unable to generate an anonymized ID");
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
475 }
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
476 }
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
477
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
478 uidMap_.insert(std::make_pair(std::make_pair(level, stripped), mapped));
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
479 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
480 else
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
481 {
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
482 mapped = previous->second;
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
483 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
484
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
485 return mapped;
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
486 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
487
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
488
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
489 void DicomModification::MapDicomTags(ParsedDicomFile& dicom,
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
490 ResourceType level)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
492 std::unique_ptr<DicomTag> tag;
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 switch (level)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 {
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
496 case ResourceType_Study:
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 break;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
500 case ResourceType_Series:
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502 break;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
504 case ResourceType_Instance:
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 tag.reset(new DicomTag(DICOM_TAG_SOP_INSTANCE_UID));
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 break;
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508 default:
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509 throw OrthancException(ErrorCode_InternalError);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512 std::string original;
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
513 if (!const_cast<const ParsedDicomFile&>(dicom).GetTagValue(original, *tag))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
514 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
515 original = "";
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
516 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
517
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
518 std::string mapped = MapDicomIdentifier(original, level);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
520 dicom.Replace(*tag, mapped,
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
521 false /* don't try and decode data URI scheme for UIDs */,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
522 DicomReplaceMode_InsertIfAbsent, privateCreator_);
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
523 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
525
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
526 DicomModification::DicomModification() :
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
527 removePrivateTags_(false),
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
528 level_(ResourceType_Instance),
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
529 allowManualIdentifiers_(true),
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
530 keepStudyInstanceUid_(false),
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
531 keepSeriesInstanceUid_(false),
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
532 keepSopInstanceUid_(false),
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
533 updateReferencedRelationships_(true),
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
534 isAnonymization_(false),
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
535 //privateCreator_("PrivateCreator"),
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
536 identifierGenerator_(NULL)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
537 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
538 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
539
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
540 DicomModification::~DicomModification()
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
541 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
542 ClearReplacements();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
543 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
544
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
545 void DicomModification::Keep(const DicomTag& tag)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
546 {
5137
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
547 keep_.insert(tag);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
548 removals_.erase(tag);
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
549 clearings_.erase(tag);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
550 uids_.erase(tag);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
551
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
552 CancelReplacement(tag);
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
553
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
554 if (tag == DICOM_TAG_STUDY_INSTANCE_UID)
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
555 {
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
556 keepStudyInstanceUid_ = true;
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
557 }
2321
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
558 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID)
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
559 {
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
560 keepSeriesInstanceUid_ = true;
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
561 }
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
562 else if (tag == DICOM_TAG_SOP_INSTANCE_UID)
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
563 {
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
564 keepSopInstanceUid_ = true;
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
565 }
2321
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
566 else if (tag.IsPrivate())
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
567 {
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
568 privateTagsToKeep_.insert(tag);
65ffba10cace warning message in DicomModification::Keep()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2314
diff changeset
569 }
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
570
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
571 MarkNotOrthancAnonymization();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
572 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
573
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
574 void DicomModification::Remove(const DicomTag& tag)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
575 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
576 removals_.insert(tag);
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
577 clearings_.erase(tag);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
578 uids_.erase(tag);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
579 CancelReplacement(tag);
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
580 privateTagsToKeep_.erase(tag);
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
581
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
582 MarkNotOrthancAnonymization();
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
583 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
584
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
585 void DicomModification::Clear(const DicomTag& tag)
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
586 {
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
587 removals_.erase(tag);
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
588 clearings_.insert(tag);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
589 uids_.erase(tag);
2323
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2321
diff changeset
590 CancelReplacement(tag);
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
591 privateTagsToKeep_.erase(tag);
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
592
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
593 MarkNotOrthancAnonymization();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
594 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
595
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
596 bool DicomModification::IsRemoved(const DicomTag& tag) const
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
597 {
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
598 if (removals_.find(tag) != removals_.end())
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
599 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
600 return true;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
601 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
602 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
603 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
604 for (RemovedRanges::const_iterator it = removedRanges_.begin();
4690
13efc0967cea cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4688
diff changeset
605 it != removedRanges_.end(); ++it)
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
606 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
607 if (it->Contains(tag))
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
608 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
609 return true;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
610 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
611 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
612
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
613 return false;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
614 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
615 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
616
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
617 bool DicomModification::IsCleared(const DicomTag& tag) const
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
618 {
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
619 return clearings_.find(tag) != clearings_.end();
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
620 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
621
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
622 void DicomModification::Replace(const DicomTag& tag,
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
623 const Json::Value& value,
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
624 bool safeForAnonymization)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
625 {
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
626 clearings_.erase(tag);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
627 removals_.erase(tag);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
628 uids_.erase(tag);
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
629 privateTagsToKeep_.erase(tag);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
630 ReplaceInternal(tag, value);
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
631
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
632 if (!safeForAnonymization)
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
633 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
634 MarkNotOrthancAnonymization();
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
635 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
636 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
637
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
638
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
639 bool DicomModification::IsReplaced(const DicomTag& tag) const
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
640 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
641 return replacements_.find(tag) != replacements_.end();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
642 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
643
5137
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
644 bool DicomModification::IsKept(const DicomTag& tag) const
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
645 {
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
646 return keep_.find(tag) != keep_.end();
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
647 }
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
648
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
649 const Json::Value& DicomModification::GetReplacement(const DicomTag& tag) const
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
650 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
651 Replacements::const_iterator it = replacements_.find(tag);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
652
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
653 if (it == replacements_.end())
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
654 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
655 throw OrthancException(ErrorCode_InexistentItem);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
656 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
657 else
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
658 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
659 assert(it->second != NULL);
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
660 return *it->second;
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
661 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
662 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
663
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
664
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
665 std::string DicomModification::GetReplacementAsString(const DicomTag& tag) const
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
666 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
667 const Json::Value& json = GetReplacement(tag);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
668
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
669 if (json.type() != Json::stringValue)
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
670 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
671 throw OrthancException(ErrorCode_BadParameterType);
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
672 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
673 else
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
674 {
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
675 return json.asString();
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
676 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
677 }
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
678
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
679
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
680 void DicomModification::SetRemovePrivateTags(bool removed)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
681 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
682 removePrivateTags_ = removed;
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
683
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
684 if (!removed)
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
685 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
686 MarkNotOrthancAnonymization();
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
687 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
688 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
689
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
690 bool DicomModification::ArePrivateTagsRemoved() const
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
691 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
692 return removePrivateTags_;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
693 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
694
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
695 void DicomModification::SetLevel(ResourceType level)
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
696 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
697 uidMap_.clear();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
698 level_ = level;
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
699
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
700 if (level != ResourceType_Patient)
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
701 {
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
702 MarkNotOrthancAnonymization();
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
703 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
704 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
705
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
706 ResourceType DicomModification::GetLevel() const
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
707 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
708 return level_;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
709 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
710
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
711
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
712 static void SetupUidsFromOrthancInternal(std::set<DicomTag>& uids,
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
713 std::set<DicomTag>& removals,
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
714 const DicomTag& tag)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
715 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
716 uids.insert(tag);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
717 removals.erase(tag); // Necessary if unserializing a job from 1.9.3
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
718 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
719
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
720
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
721 void DicomModification::SetupUidsFromOrthanc_1_9_3()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
722 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
723 /**
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
724 * Values below come from the hardcoded UID of Orthanc 1.9.3
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
725 * in DicomModification::RelationshipsVisitor::VisitString() and
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
726 * DicomModification::RelationshipsVisitor::RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
727 * https://hg.orthanc-server.com/orthanc/file/Orthanc-1.9.3/OrthancFramework/Sources/DicomParsing/DicomModification.cpp#l117
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
728 **/
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
729 uids_.clear();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
730
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
731 // (*) "PatientID" and "PatientName" are handled as UIDs since Orthanc 1.9.4
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
732 uids_.insert(DICOM_TAG_PATIENT_ID);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
733 uids_.insert(DICOM_TAG_PATIENT_NAME);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
734
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
735 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0008, 0x0014)); // Instance Creator UID <= from SetupAnonymization2008()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
736 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID <= from VisitString() + RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
737 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0020, 0x0052)); // Frame of Reference UID <= from VisitString() + RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
738 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID <= from SetupAnonymization2008()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
739 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0040, 0xa124)); // UID <= from SetupAnonymization2008()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
740 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x0088, 0x0140)); // Storage Media File-set UID <= from SetupAnonymization2008()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
741 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID <= from VisitString() + RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
742 SetupUidsFromOrthancInternal(uids_, removals_, DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID <= from VisitString() + RemoveRelationships()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
743 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
744
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
745
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
746 void DicomModification::SetupAnonymization2008()
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
747 {
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
748 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
749 // https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
750
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
751 SetupUidsFromOrthanc_1_9_3();
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
752
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
753 //uids_.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID => set in SetupUidsFromOrthanc_1_9_3()
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
754 //removals_.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set in Apply()
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
755 removals_.insert(DicomTag(0x0008, 0x0050)); // Accession Number
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
756 removals_.insert(DicomTag(0x0008, 0x0080)); // Institution Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
757 removals_.insert(DicomTag(0x0008, 0x0081)); // Institution Address
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
758 removals_.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
759 removals_.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
760 removals_.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
761 removals_.insert(DicomTag(0x0008, 0x1010)); // Station Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
762 removals_.insert(DicomTag(0x0008, 0x1030)); // Study Description
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
763 removals_.insert(DicomTag(0x0008, 0x103e)); // Series Description
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
764 removals_.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
765 removals_.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
766 removals_.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
767 removals_.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
768 removals_.insert(DicomTag(0x0008, 0x1070)); // Operators' Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
769 removals_.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
770 //uids_.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID => set in SetupUidsFromOrthanc_1_9_3()
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
771 removals_.insert(DicomTag(0x0008, 0x2111)); // Derivation Description
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
772 //removals_.insert(DicomTag(0x0010, 0x0010)); // Patient's Name => cf. below (*)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
773 //removals_.insert(DicomTag(0x0010, 0x0020)); // Patient ID => cf. below (*)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
774 removals_.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
775 removals_.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
776 removals_.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
777 removals_.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
778 removals_.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
779 removals_.insert(DicomTag(0x0010, 0x1010)); // Patient's Age
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
780 removals_.insert(DicomTag(0x0010, 0x1020)); // Patient's Size
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
781 removals_.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
782 removals_.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
783 removals_.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
784 removals_.insert(DicomTag(0x0010, 0x2180)); // Occupation
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
785 removals_.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
786 removals_.insert(DicomTag(0x0010, 0x4000)); // Patient Comments
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
787 removals_.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
788 removals_.insert(DicomTag(0x0018, 0x1030)); // Protocol Name
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
789 //removals_.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => set in Apply()
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
790 //removals_.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => set in Apply()
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
791 removals_.insert(DicomTag(0x0020, 0x0010)); // Study ID
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
792 //uids_.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
793 //uids_.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3()
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
794 removals_.insert(DicomTag(0x0020, 0x4000)); // Image Comments
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
795 removals_.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
796 //uids_.insert(DicomTag(0x0040, 0xa124)); // UID => set in SetupUidsFromOrthanc_1_9_3()
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
797 removals_.insert(DicomTag(0x0040, 0xa730)); // Content Sequence
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
798 //uids_.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID => set in SetupUidsFromOrthanc_1_9_3()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
799 //uids_.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3()
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
800 //uids_.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID => set in SetupUidsFromOrthanc_1_9_3()
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
801
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
802 // Some more removals (from the experience of DICOM files at the CHU of Liege)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
803 removals_.insert(DicomTag(0x0010, 0x1040)); // Patient's Address
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
804 removals_.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
805 removals_.insert(DicomTag(0x0010, 0x2154)); // PatientTelephoneNumbers
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
806 removals_.insert(DicomTag(0x0010, 0x2000)); // Medical Alerts
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
807
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
808 // Set the DeidentificationMethod tag
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
809 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2008);
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
810 }
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
811
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
812
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
813 void DicomModification::SetupAnonymization2017c()
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
814 {
2313
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
815 /**
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
816 * This is Table E.1-1 from PS 3.15-2017c (DICOM Part 15: Security
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
817 * and System Management Profiles), "basic profile" column. It was
4675
7e4d1f2b3a8f GenerateAnonymizationProfile.py can read from URL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
818 * generated automatically by calling:
7e4d1f2b3a8f GenerateAnonymizationProfile.py can read from URL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
819 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py
7e4d1f2b3a8f GenerateAnonymizationProfile.py can read from URL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
820 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2017c/part15.xml"
2313
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
821 **/
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
822
4676
caf963ee3de9 DicomModification_Anonymization2017c.impl.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4675
diff changeset
823 #include "DicomModification_Anonymization2017c.impl.h"
2313
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
824
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
825 // Set the DeidentificationMethod tag
d19e716b79fa switch to anonymization according to DICOM 2017c
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2311
diff changeset
826 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2017c);
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
827 }
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
828
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
829
4677
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
830 void DicomModification::SetupAnonymization2021b()
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
831 {
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
832 /**
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
833 * This is Table E.1-1 from PS 3.15-2021b (DICOM Part 15: Security
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
834 * and System Management Profiles), "basic profile" column. It was
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
835 * generated automatically by calling:
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
836 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
837 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2021b/part15.xml"
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
838 **/
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
839
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
840 #include "DicomModification_Anonymization2021b.impl.h"
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
841
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
842 // Set the DeidentificationMethod tag
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
843 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2021b);
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
844 }
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
845
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
846
5334
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
847 void DicomModification::SetupAnonymization2023b()
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
848 {
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
849 /**
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
850 * This is Table E.1-1 from PS 3.15-2023b (DICOM Part 15: Security
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
851 * and System Management Profiles), "basic profile" column. It was
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
852 * generated automatically by calling:
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
853 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
854 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2023b/part15.xml"
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
855 *
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
856 * http://dicom.nema.org/medical/dicom/current/output/chtml/part15/chapter_E.html#table_E.1-1a
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
857 * http://dicom.nema.org/medical/dicom/current/output/chtml/part15/chapter_E.html#table_E.1-1
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
858 **/
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
859
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
860 #include "DicomModification_Anonymization2023b.impl.h"
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
861
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
862 // Set the DeidentificationMethod tag
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
863 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2023b);
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
864 }
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
865
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
866
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
867 void DicomModification::SetupAnonymization(DicomVersion version)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
868 {
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
869 isAnonymization_ = true;
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
870
5137
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
871 keep_.clear();
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
872 removals_.clear();
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
873 clearings_.clear();
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
874 removedRanges_.clear();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
875 uids_.clear();
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
876 ClearReplacements();
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
877 removePrivateTags_ = true;
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
878 level_ = ResourceType_Patient;
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
879 uidMap_.clear();
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
880 privateTagsToKeep_.clear();
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
881 keepSequences_.clear();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
882 removeSequences_.clear();
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
883
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
884 switch (version)
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
885 {
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
886 case DicomVersion_2008:
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
887 SetupAnonymization2008();
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
888 break;
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
889
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
890 case DicomVersion_2017c:
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
891 SetupAnonymization2017c();
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
892 break;
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
893
4677
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
894 case DicomVersion_2021b:
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
895 SetupAnonymization2021b();
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
896 break;
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
897
5334
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
898 case DicomVersion_2023b:
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
899 SetupAnonymization2023b();
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
900 break;
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
901
2309
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
902 default:
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
903 throw OrthancException(ErrorCode_ParameterOutOfRange);
4dc313b9a20a Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2277
diff changeset
904 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
905
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
906 // Set the PatientIdentityRemoved tag
1698
d78b87f93bcf DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
907 ReplaceInternal(DicomTag(0x0012, 0x0062), "YES");
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
908
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
909 // (*) Choose a random patient name and ID
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
910 uids_.insert(DICOM_TAG_PATIENT_ID);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
911 uids_.insert(DICOM_TAG_PATIENT_NAME);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
912
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
913 // Sanity check
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
914 for (SetOfTags::const_iterator it = uids_.begin(); it != uids_.end(); ++it)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
915 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
916 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(*it);
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
917 if (*it == DICOM_TAG_PATIENT_ID)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
918 {
4696
dd6274412ff4 new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
919 if (vr != ValueRepresentation_LongString &&
dd6274412ff4 new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
920 vr != ValueRepresentation_NotSupported /* if no dictionary loaded */)
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
921 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
922 throw OrthancException(ErrorCode_InternalError);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
923 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
924 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
925 else if (*it == DICOM_TAG_PATIENT_NAME)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
926 {
4696
dd6274412ff4 new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
927 if (vr != ValueRepresentation_PersonName &&
dd6274412ff4 new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
928 vr != ValueRepresentation_NotSupported /* if no dictionary loaded */)
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
929 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
930 throw OrthancException(ErrorCode_InternalError);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
931 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
932 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
933 else if (vr != ValueRepresentation_UniqueIdentifier &&
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
934 vr != ValueRepresentation_NotSupported /* for older versions of DCMTK */)
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
935 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
936 throw OrthancException(ErrorCode_InternalError);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
937 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
938 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
939 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
940
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
941 void DicomModification::Apply(ParsedDicomFile& toModify)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
942 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
943 // Check the request
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
944 assert(ResourceType_Patient + 1 == ResourceType_Study &&
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
945 ResourceType_Study + 1 == ResourceType_Series &&
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 787
diff changeset
946 ResourceType_Series + 1 == ResourceType_Instance);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
947
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
948 if (IsRemoved(DICOM_TAG_PATIENT_ID) ||
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
949 IsRemoved(DICOM_TAG_STUDY_INSTANCE_UID) ||
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
950 IsRemoved(DICOM_TAG_SERIES_INSTANCE_UID) ||
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
951 IsRemoved(DICOM_TAG_SOP_INSTANCE_UID))
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
952 {
5137
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
953 throw OrthancException(ErrorCode_BadRequest, "It is forbidden to remove one of the main Dicom identifiers");
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
954 }
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
955
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
956 if (!allowManualIdentifiers_)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
957 {
5132
482f3e80ed0a cppcheck
Alain Mazy <am@osimis.io>
parents: 5130
diff changeset
958 // Sanity checks at the patient level
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
959 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
960 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
961 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
962 "When modifying a patient, the StudyInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
963 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
964
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
965 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
966 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
967 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
968 "When modifying a patient, the SeriesInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
969 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
970
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
971 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
972 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
973 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
974 "When modifying a patient, the SopInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
975 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
976
5132
482f3e80ed0a cppcheck
Alain Mazy <am@osimis.io>
parents: 5130
diff changeset
977 // Sanity checks at the study level
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
978 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
979 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
980 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
981 "When modifying a study, the SeriesInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
982 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
983
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
984 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
985 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
986 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
987 "When modifying a study, the SopInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
988 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
989
5132
482f3e80ed0a cppcheck
Alain Mazy <am@osimis.io>
parents: 5130
diff changeset
990 // Sanity checks at the series level
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
991 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
992 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
993 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
994 "When modifying a series, the SopInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
995 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
996 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
997
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
998
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
999 // (0) Create a summary of the source file, if a custom generator
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1000 // is provided
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1001 if (identifierGenerator_ != NULL)
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1002 {
4139
a4f28efdfccf "maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
1003 toModify.ExtractDicomSummary(currentSource_, ORTHANC_MAXIMUM_TAG_LENGTH);
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1004 }
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1005
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1006 // (1) Make sure the relationships are updated with the ids that we force too
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1007 // i.e: an RT-STRUCT is referencing its own StudyInstanceUID
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1008 if (isAnonymization_ && updateReferencedRelationships_)
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1009 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1010 if (IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1011 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1012 std::string original;
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1013 std::string replacement = GetReplacementAsString(DICOM_TAG_STUDY_INSTANCE_UID);
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
1014 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_STUDY_INSTANCE_UID);
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1015 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Study);
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1016 }
2535
d3476d90dcb7 DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1017
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1018 if (IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1019 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1020 std::string original;
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1021 std::string replacement = GetReplacementAsString(DICOM_TAG_SERIES_INSTANCE_UID);
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
1022 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SERIES_INSTANCE_UID);
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1023 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Series);
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1024 }
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1025
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1026 if (IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1027 {
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1028 std::string original;
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1029 std::string replacement = GetReplacementAsString(DICOM_TAG_SOP_INSTANCE_UID);
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
1030 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SOP_INSTANCE_UID);
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1031 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Instance);
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1032 }
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1033 }
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1034
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1035
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1036 // (2) Remove the private tags, if need be
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1037 if (removePrivateTags_)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1038 {
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
1039 toModify.RemovePrivateTags(privateTagsToKeep_);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1040 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1041
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1042 // (3) Clear the tags specified by the user
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
1043 for (SetOfTags::const_iterator it = clearings_.begin();
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
1044 it != clearings_.end(); ++it)
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
1045 {
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
1046 toModify.Clear(*it, true /* only clear if the tag exists in the original file */);
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
1047 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2309
diff changeset
1048
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1049 // (4) Remove the tags specified by the user
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 916
diff changeset
1050 for (SetOfTags::const_iterator it = removals_.begin();
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1051 it != removals_.end(); ++it)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1052 {
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1053 toModify.Remove(*it);
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1054 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1055
3513
7db879b014ff Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents: 3344
diff changeset
1056 // (5) Replace the tags
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1057 for (Replacements::const_iterator it = replacements_.begin();
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1058 it != replacements_.end(); ++it)
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1059 {
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1060 assert(it->second != NULL);
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1061 toModify.Replace(it->first, *it->second, true /* decode data URI scheme */,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1062 DicomReplaceMode_InsertIfAbsent, privateCreator_);
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1063 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1064
4691
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1065 // (6) Update the DICOM identifiers
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1066 if (level_ <= ResourceType_Study &&
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1067 !IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1068 {
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1069 if (keepStudyInstanceUid_)
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1070 {
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1071 LOG(WARNING) << "Modifying a study while keeping its original StudyInstanceUID: This should be avoided!";
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1072 }
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1073 else
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1074 {
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1075 MapDicomTags(toModify, ResourceType_Study);
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1076 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1077 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1078
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1079 if (level_ <= ResourceType_Series &&
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1080 !IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1081 {
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1082 if (keepSeriesInstanceUid_)
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1083 {
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1084 LOG(WARNING) << "Modifying a series while keeping its original SeriesInstanceUID: This should be avoided!";
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1085 }
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1086 else
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1087 {
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1088 MapDicomTags(toModify, ResourceType_Series);
2194
3b40ca7470cc "Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1089 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1090 }
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1091
1279
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1092 if (level_ <= ResourceType_Instance && // Always true
7f3a65e84d4b More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
1093 !IsReplaced(DICOM_TAG_SOP_INSTANCE_UID))
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1094 {
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1095 if (keepSopInstanceUid_)
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1096 {
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1097 LOG(WARNING) << "Modifying an instance while keeping its original SOPInstanceUID: This should be avoided!";
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1098 }
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1099 else
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1100 {
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1101 MapDicomTags(toModify, ResourceType_Instance);
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1102 }
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1103 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1104
4691
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1105 // (7) Update the "referenced" relationships in the case of an anonymization
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
1106 if (isAnonymization_)
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1107 {
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1108 RelationshipsVisitor visitor(*this);
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1109
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1110 if (updateReferencedRelationships_)
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1111 {
4273
0034f855c023 tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4268
diff changeset
1112 const_cast<const ParsedDicomFile&>(toModify).Apply(visitor);
2506
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1113 }
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1114 else
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1115 {
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1116 visitor.RemoveRelationships(toModify);
51b91ead6c38 Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1117 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1118 }
4691
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1119
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1120 // (8) New in Orthanc 1.9.4: Apply modifications to subsequences
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1121 for (ListOfPaths::const_iterator it = removeSequences_.begin();
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1122 it != removeSequences_.end(); ++it)
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1123 {
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1124 assert(it->GetPrefixLength() > 0);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1125 toModify.RemovePath(*it);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1126 }
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1127
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1128 for (SequenceReplacements::const_iterator it = sequenceReplacements_.begin();
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1129 it != sequenceReplacements_.end(); ++it)
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1130 {
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1131 assert(*it != NULL);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1132 assert((*it)->GetPath().GetPrefixLength() > 0);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1133 toModify.ReplacePath((*it)->GetPath(), (*it)->GetValue(), true /* decode data URI scheme */,
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1134 DicomReplaceMode_InsertIfAbsent, privateCreator_);
a08ef46c95a1 applying modifications to subsequences after all the other modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4690
diff changeset
1135 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1136 }
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1137
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1138 void DicomModification::SetAllowManualIdentifiers(bool check)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1139 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1140 allowManualIdentifiers_ = check;
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1141 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1142
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1143 bool DicomModification::AreAllowManualIdentifiers() const
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1144 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1145 return allowManualIdentifiers_;
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1146 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1147
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1148
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1149 static bool IsDatabaseKey(const DicomTag& tag)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1150 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1151 return (tag == DICOM_TAG_PATIENT_ID ||
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1152 tag == DICOM_TAG_STUDY_INSTANCE_UID ||
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1153 tag == DICOM_TAG_SERIES_INSTANCE_UID ||
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1154 tag == DICOM_TAG_SOP_INSTANCE_UID);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1155 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1156
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1157
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1158 static void ParseListOfTags(DicomModification& target,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1159 const Json::Value& query,
4737
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4734
diff changeset
1160 TagOperation operation,
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1161 bool force)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1162 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1163 if (!query.isArray())
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1164 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1165 throw OrthancException(ErrorCode_BadRequest);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1166 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1167
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1168 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1169 {
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1170 if (query[i].type() != Json::stringValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1171 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1172 throw OrthancException(ErrorCode_BadRequest);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1173 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2721
diff changeset
1174
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1175 std::string name = query[i].asString();
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1176
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1177 const DicomPath path(DicomPath::Parse(name));
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1178
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1179 if (path.GetPrefixLength() == 0 &&
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1180 !force &&
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1181 IsDatabaseKey(path.GetFinalTag()))
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1182 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1183 throw OrthancException(ErrorCode_BadRequest,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1184 "Marking tag \"" + name + "\" as to be " +
4737
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4734
diff changeset
1185 (operation == TagOperation_Keep ? "kept" : "removed") +
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1186 " requires the \"Force\" option to be set to true");
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1187 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1188
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1189 switch (operation)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1190 {
4737
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4734
diff changeset
1191 case TagOperation_Keep:
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1192 target.Keep(path);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1193 LOG(TRACE) << "Keep: " << name << " = " << path.Format();
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1194 break;
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1195
4737
979ae3ea3381 DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4734
diff changeset
1196 case TagOperation_Remove:
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1197 target.Remove(path);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1198 LOG(TRACE) << "Remove: " << name << " = " << path.Format();
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1199 break;
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1200
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1201 default:
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1202 throw OrthancException(ErrorCode_InternalError);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1203 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1204 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1205 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1206
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1207
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1208 static void ParseReplacements(DicomModification& target,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1209 const Json::Value& replacements,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1210 bool force)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1211 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1212 if (!replacements.isObject())
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1213 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1214 throw OrthancException(ErrorCode_BadRequest);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1215 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1216
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1217 Json::Value::Members members = replacements.getMemberNames();
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1218 for (size_t i = 0; i < members.size(); i++)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1219 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1220 const std::string& name = members[i];
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1221 const Json::Value& value = replacements[name];
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1222
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1223 const DicomPath path(DicomPath::Parse(name));
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1224
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1225 if (path.GetPrefixLength() == 0 &&
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1226 !force &&
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1227 IsDatabaseKey(path.GetFinalTag()))
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1228 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1229 throw OrthancException(ErrorCode_BadRequest,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1230 "Marking tag \"" + name + "\" as to be replaced " +
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1231 "requires the \"Force\" option to be set to true");
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1232 }
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1233
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1234 target.Replace(path, value, false /* not safe for anonymization */);
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1235
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1236 LOG(TRACE) << "Replace: " << name << " = " << path.Format()
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1237 << " by: " << value.toStyledString();
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1238 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1239 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1240
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1241
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1242 static bool GetBooleanValue(const std::string& member,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1243 const Json::Value& json,
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1244 bool defaultValue)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1245 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1246 if (!json.isMember(member))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1247 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1248 return defaultValue;
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1249 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1250 else if (json[member].type() == Json::booleanValue)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1251 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1252 return json[member].asBool();
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1253 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1254 else
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1255 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1256 throw OrthancException(ErrorCode_BadFileFormat,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1257 "Member \"" + member + "\" should be a Boolean value");
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1258 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1259 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1260
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1261
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1262 void DicomModification::ParseModifyRequest(const Json::Value& request)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1263 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1264 if (!request.isObject())
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1265 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1266 throw OrthancException(ErrorCode_BadFileFormat);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1267 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1268
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1269 bool force = GetBooleanValue("Force", request, false);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1270
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1271 if (GetBooleanValue("RemovePrivateTags", request, false))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1272 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1273 SetRemovePrivateTags(true);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1274 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1275
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1276 if (request.isMember("Remove"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1277 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1278 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1279 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1280
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1281 if (request.isMember("Replace"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1282 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1283 ParseReplacements(*this, request["Replace"], force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1284 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1285
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1286 // The "Keep" operation only makes sense for the tags
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1287 // StudyInstanceUID, SeriesInstanceUID and SOPInstanceUID. Avoid
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1288 // this feature as much as possible, as this breaks the DICOM
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1289 // model of the real world, except if you know exactly what
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1290 // you're doing!
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1291 if (request.isMember("Keep"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1292 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1293 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1294 }
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1295
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1296 // New in Orthanc 1.6.0
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1297 if (request.isMember("PrivateCreator"))
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1298 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1299 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator");
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1300 }
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1301
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1302 if (!force)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1303 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1304 /**
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1305 * Sanity checks about the manual replacement of DICOM
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1306 * identifiers. Those checks were part of
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1307 * "DicomModification::Apply()" in Orthanc <= 1.11.2, and
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1308 * couldn't be disabled even if using the "Force" flag. Check
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1309 * out:
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1310 * https://groups.google.com/g/orthanc-users/c/xMUUZAnBa5g/m/WCEu-U2NBQAJ
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1311 **/
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1312 bool isReplacedPatientId = (IsReplaced(DICOM_TAG_PATIENT_ID) ||
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1313 uids_.find(DICOM_TAG_PATIENT_ID) != uids_.end());
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1314
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1315 if (level_ == ResourceType_Patient && !isReplacedPatientId)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1316 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1317 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1318 "When modifying a patient, her PatientID is required to be modified.");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1319 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1320
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1321 if (level_ == ResourceType_Study && isReplacedPatientId)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1322 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1323 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1324 "When modifying a study, the parent PatientID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1325 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1326
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1327 if (level_ == ResourceType_Series && isReplacedPatientId)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1328 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1329 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1330 "When modifying a series, the parent PatientID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1331 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1332
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1333 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1334 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1335 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1336 "When modifying a series, the parent StudyInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1337 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1338
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1339 if (level_ == ResourceType_Instance && isReplacedPatientId)
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1340 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1341 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1342 "When modifying an instance, the parent PatientID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1343 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1344
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1345 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1346 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1347 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1348 "When modifying an instance, the parent StudyInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1349 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1350
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1351 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1352 {
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1353 throw OrthancException(ErrorCode_BadRequest,
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1354 "When modifying an instance, the parent SeriesInstanceUID cannot be manually modified");
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1355 }
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1356 }
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1357 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1358
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1359
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
1360 void DicomModification::ParseAnonymizationRequest(bool& patientNameOverridden,
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1361 const Json::Value& request)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1362 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1363 if (!request.isObject())
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1364 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1365 throw OrthancException(ErrorCode_BadFileFormat);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1366 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1367
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1368 bool force = GetBooleanValue("Force", request, false);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1369
4677
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
1370 // DicomVersion version = DicomVersion_2008; // For Orthanc <= 1.2.0
521e39b3f2c0 Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4676
diff changeset
1371 // DicomVersion version = DicomVersion_2017c; // For Orthanc between 1.3.0 and 1.9.3
5334
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
1372 // DicomVersion version = DicomVersion_2021b; // For Orthanc >= 1.9.4
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
1373 DicomVersion version = DicomVersion_2023b; // For Orthanc >= 1.12.1
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
1374
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1375 if (request.isMember("DicomVersion"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1376 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1377 if (request["DicomVersion"].type() != Json::stringValue)
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1378 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1379 throw OrthancException(ErrorCode_BadFileFormat);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1380 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1381 else
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1382 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1383 version = StringToDicomVersion(request["DicomVersion"].asString());
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1384 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1385 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1386
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1387 SetupAnonymization(version);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1388
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1389 if (GetBooleanValue("KeepPrivateTags", request, false))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1390 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1391 SetRemovePrivateTags(false);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1392 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1393
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1394 if (request.isMember("Remove"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1395 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1396 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1397 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1398
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1399 if (request.isMember("Replace"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1400 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1401 ParseReplacements(*this, request["Replace"], force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1402 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1403
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1404 if (request.isMember("Keep"))
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1405 {
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1406 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force);
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1407 }
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1408
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
1409 patientNameOverridden = (uids_.find(DICOM_TAG_PATIENT_NAME) == uids_.end());
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4691
diff changeset
1410
3709
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1411 // New in Orthanc 1.6.0
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1412 if (request.isMember("PrivateCreator"))
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1413 {
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1414 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator");
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1415 }
2519
2e6b7862ccf2 ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2506
diff changeset
1416 }
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1417
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1418 void DicomModification::SetDicomIdentifierGenerator(DicomModification::IDicomIdentifierGenerator &generator)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1419 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1420 identifierGenerator_ = &generator;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1421 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1422
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1423
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1424
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1425
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1426 static const char* REMOVE_PRIVATE_TAGS = "RemovePrivateTags";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1427 static const char* LEVEL = "Level";
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1428 static const char* ALLOW_MANUAL_IDENTIFIERS = "AllowManualIdentifiers";
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1429 static const char* KEEP_STUDY_INSTANCE_UID = "KeepStudyInstanceUID";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1430 static const char* KEEP_SERIES_INSTANCE_UID = "KeepSeriesInstanceUID";
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1431 static const char* KEEP_SOP_INSTANCE_UID = "KeepSOPInstanceUID";
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1432 static const char* UPDATE_REFERENCED_RELATIONSHIPS = "UpdateReferencedRelationships";
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
1433 static const char* IS_ANONYMIZATION = "IsAnonymization";
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1434 static const char* REMOVALS = "Removals";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1435 static const char* CLEARINGS = "Clearings";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1436 static const char* PRIVATE_TAGS_TO_KEEP = "PrivateTagsToKeep";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1437 static const char* REPLACEMENTS = "Replacements";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1438 static const char* MAP_PATIENTS = "MapPatients";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1439 static const char* MAP_STUDIES = "MapStudies";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1440 static const char* MAP_SERIES = "MapSeries";
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1441 static const char* MAP_INSTANCES = "MapInstances";
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1442 static const char* PRIVATE_CREATOR = "PrivateCreator"; // New in Orthanc 1.6.0
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1443 static const char* UIDS = "Uids"; // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1444 static const char* REMOVED_RANGES = "RemovedRanges"; // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1445 static const char* KEEP_SEQUENCES = "KeepSequences"; // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1446 static const char* REMOVE_SEQUENCES = "RemoveSequences"; // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1447 static const char* SEQUENCE_REPLACEMENTS = "SequenceReplacements"; // New in Orthanc 1.9.4
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1448
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1449 void DicomModification::Serialize(Json::Value& value) const
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1450 {
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1451 if (identifierGenerator_ != NULL)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1452 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1453 throw OrthancException(ErrorCode_InternalError,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1454 "Cannot serialize a DicomModification with a custom identifier generator");
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1455 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1456
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1457 value = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1458 value[REMOVE_PRIVATE_TAGS] = removePrivateTags_;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1459 value[LEVEL] = EnumerationToString(level_);
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1460 value[ALLOW_MANUAL_IDENTIFIERS] = allowManualIdentifiers_;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1461 value[KEEP_STUDY_INSTANCE_UID] = keepStudyInstanceUid_;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1462 value[KEEP_SERIES_INSTANCE_UID] = keepSeriesInstanceUid_;
3860
9ccbbd55bc23 allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents: 3712
diff changeset
1463 value[KEEP_SOP_INSTANCE_UID] = keepSopInstanceUid_;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1464 value[UPDATE_REFERENCED_RELATIONSHIPS] = updateReferencedRelationships_;
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
1465 value[IS_ANONYMIZATION] = isAnonymization_;
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1466 value[PRIVATE_CREATOR] = privateCreator_;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1467
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1468 SerializationToolbox::WriteSetOfTags(value, removals_, REMOVALS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1469 SerializationToolbox::WriteSetOfTags(value, clearings_, CLEARINGS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1470 SerializationToolbox::WriteSetOfTags(value, privateTagsToKeep_, PRIVATE_TAGS_TO_KEEP);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1471
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1472 Json::Value& tmp = value[REPLACEMENTS];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1473
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1474 tmp = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1475
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1476 for (Replacements::const_iterator it = replacements_.begin();
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1477 it != replacements_.end(); ++it)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1478 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1479 assert(it->second != NULL);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1480 tmp[it->first.Format()] = *it->second;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1481 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1482
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1483 Json::Value& mapPatients = value[MAP_PATIENTS];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1484 Json::Value& mapStudies = value[MAP_STUDIES];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1485 Json::Value& mapSeries = value[MAP_SERIES];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1486 Json::Value& mapInstances = value[MAP_INSTANCES];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1487
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1488 mapPatients = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1489 mapStudies = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1490 mapSeries = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1491 mapInstances = Json::objectValue;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1492
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1493 for (UidMap::const_iterator it = uidMap_.begin(); it != uidMap_.end(); ++it)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1494 {
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1495 Json::Value* tmp2 = NULL;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1496
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1497 switch (it->first.first)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1498 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1499 case ResourceType_Patient:
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1500 tmp2 = &mapPatients;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1501 break;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1502
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1503 case ResourceType_Study:
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1504 tmp2 = &mapStudies;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1505 break;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1506
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1507 case ResourceType_Series:
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1508 tmp2 = &mapSeries;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1509 break;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1510
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1511 case ResourceType_Instance:
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1512 tmp2 = &mapInstances;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1513 break;
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1514
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1515 default:
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1516 throw OrthancException(ErrorCode_InternalError);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1517 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1518
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1519 assert(tmp2 != NULL);
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4139
diff changeset
1520 (*tmp2) [it->first.second] = it->second;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1521 }
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1522
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1523 // New in Orthanc 1.9.4
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1524 SerializationToolbox::WriteSetOfTags(value, uids_, UIDS);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1525
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1526 // New in Orthanc 1.9.4
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1527 Json::Value ranges = Json::arrayValue;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1528
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1529 for (RemovedRanges::const_iterator it = removedRanges_.begin(); it != removedRanges_.end(); ++it)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1530 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1531 Json::Value item = Json::arrayValue;
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1532 item.append(it->GetGroupFrom());
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1533 item.append(it->GetGroupTo());
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1534 item.append(it->GetElementFrom());
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1535 item.append(it->GetElementTo());
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1536 ranges.append(item);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1537 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1538
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1539 value[REMOVED_RANGES] = ranges;
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1540
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1541 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1542 Json::Value lst = Json::arrayValue;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1543 for (ListOfPaths::const_iterator it = keepSequences_.begin(); it != keepSequences_.end(); ++it)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1544 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1545 lst.append(it->Format());
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1546 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1547
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1548 value[KEEP_SEQUENCES] = lst;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1549
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1550 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1551 lst = Json::arrayValue;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1552 for (ListOfPaths::const_iterator it = removeSequences_.begin(); it != removeSequences_.end(); ++it)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1553 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1554 assert(it->GetPrefixLength() > 0);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1555 lst.append(it->Format());
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1556 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1557
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1558 value[REMOVE_SEQUENCES] = lst;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1559
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1560 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1561 lst = Json::objectValue;
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1562 for (SequenceReplacements::const_iterator it = sequenceReplacements_.begin(); it != sequenceReplacements_.end(); ++it)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1563 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1564 assert(*it != NULL);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1565 assert((*it)->GetPath().GetPrefixLength() > 0);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1566 lst[(*it)->GetPath().Format()] = (*it)->GetValue();
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1567 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1568
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1569 value[SEQUENCE_REPLACEMENTS] = lst;
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1570 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1571
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1572 void DicomModification::UnserializeUidMap(ResourceType level,
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1573 const Json::Value& serialized,
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1574 const char* field)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1575 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1576 if (!serialized.isMember(field) ||
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1577 serialized[field].type() != Json::objectValue)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1578 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1579 throw OrthancException(ErrorCode_BadFileFormat);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1580 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1581
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1582 Json::Value::Members names = serialized[field].getMemberNames();
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1583
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1584 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1585 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1586 const Json::Value& value = serialized[field][*it];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1587
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1588 if (value.type() != Json::stringValue)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1589 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1590 throw OrthancException(ErrorCode_BadFileFormat);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1591 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1592 else
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1593 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1594 uidMap_[std::make_pair(level, *it)] = value.asString();
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1595 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1596 }
2655
c196d76cb8fa serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
1597 }
c196d76cb8fa serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
1598
c196d76cb8fa serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
1599
2666
2540ac79ab6c SequenceOfOperationsJob serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1600 DicomModification::DicomModification(const Json::Value& serialized) :
2540ac79ab6c SequenceOfOperationsJob serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1601 identifierGenerator_(NULL)
2655
c196d76cb8fa serialization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2616
diff changeset
1602 {
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1603 removePrivateTags_ = SerializationToolbox::ReadBoolean(serialized, REMOVE_PRIVATE_TAGS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1604 level_ = StringToResourceType(SerializationToolbox::ReadString(serialized, LEVEL).c_str());
5122
8638522eeda1 revert changeset df4a90a65af9 that removes features used elsewhere, and protect by Force the change of UIDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5087
diff changeset
1605 allowManualIdentifiers_ = SerializationToolbox::ReadBoolean(serialized, ALLOW_MANUAL_IDENTIFIERS);
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1606 keepStudyInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_STUDY_INSTANCE_UID);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1607 keepSeriesInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SERIES_INSTANCE_UID);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1608 updateReferencedRelationships_ = SerializationToolbox::ReadBoolean
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1609 (serialized, UPDATE_REFERENCED_RELATIONSHIPS);
2721
062776ab4a21 fix issue #94
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2666
diff changeset
1610 isAnonymization_ = SerializationToolbox::ReadBoolean(serialized, IS_ANONYMIZATION);
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1611
4688
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1612 if (serialized.isMember(KEEP_SOP_INSTANCE_UID))
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1613 {
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1614 keepSopInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SOP_INSTANCE_UID);
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1615 }
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1616 else
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1617 {
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1618 /**
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1619 * Compatibility with jobs serialized using Orthanc between
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1620 * 1.5.0 and 1.6.1. This compatibility was broken between 1.7.0
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1621 * and 1.9.3: Indeed, an exception was thrown in "ReadBoolean()"
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1622 * if "KEEP_SOP_INSTANCE_UID" was absent, because of changeset:
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1623 * https://hg.orthanc-server.com/orthanc/rev/3860
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1624 **/
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1625 keepSopInstanceUid_ = false;
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1626 }
177ad026d219 backward compatibility with old DicomModification serialization from Orthanc <= 1.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1627
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1628 if (serialized.isMember(PRIVATE_CREATOR))
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1629 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1630 privateCreator_ = SerializationToolbox::ReadString(serialized, PRIVATE_CREATOR);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1631 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1632
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1633 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1634 SerializationToolbox::ReadSetOfTags(clearings_, serialized, CLEARINGS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1635 SerializationToolbox::ReadSetOfTags(privateTagsToKeep_, serialized, PRIVATE_TAGS_TO_KEEP);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1636
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1637 if (!serialized.isMember(REPLACEMENTS) ||
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1638 serialized[REPLACEMENTS].type() != Json::objectValue)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1639 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1640 throw OrthancException(ErrorCode_BadFileFormat);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1641 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1642
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1643 Json::Value::Members names = serialized[REPLACEMENTS].getMemberNames();
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1644
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1645 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it)
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1646 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1647 DicomTag tag(0, 0);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1648 if (!DicomTag::ParseHexadecimal(tag, it->c_str()))
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1649 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1650 throw OrthancException(ErrorCode_BadFileFormat);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1651 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1652 else
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1653 {
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1654 const Json::Value& value = serialized[REPLACEMENTS][*it];
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1655 replacements_.insert(std::make_pair(tag, new Json::Value(value)));
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1656 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1657 }
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1658
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1659 UnserializeUidMap(ResourceType_Patient, serialized, MAP_PATIENTS);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1660 UnserializeUidMap(ResourceType_Study, serialized, MAP_STUDIES);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1661 UnserializeUidMap(ResourceType_Series, serialized, MAP_SERIES);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2655
diff changeset
1662 UnserializeUidMap(ResourceType_Instance, serialized, MAP_INSTANCES);
4678
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1663
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1664 // New in Orthanc 1.9.4
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1665 if (serialized.isMember(UIDS)) // Backward compatibility with Orthanc <= 1.9.3
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1666 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1667 SerializationToolbox::ReadSetOfTags(uids_, serialized, UIDS);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1668 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1669 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1670 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1671 SetupUidsFromOrthanc_1_9_3();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1672 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1673
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1674 // New in Orthanc 1.9.4
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1675 removedRanges_.clear();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1676 if (serialized.isMember(REMOVED_RANGES)) // Backward compatibility with Orthanc <= 1.9.3
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1677 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1678 const Json::Value& ranges = serialized[REMOVED_RANGES];
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1679
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1680 if (ranges.type() != Json::arrayValue)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1681 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1682 throw OrthancException(ErrorCode_BadFileFormat);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1683 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1684 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1685 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1686 for (Json::Value::ArrayIndex i = 0; i < ranges.size(); i++)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1687 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1688 if (ranges[i].type() != Json::arrayValue ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1689 ranges[i].size() != 4 ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1690 !ranges[i][0].isUInt() ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1691 !ranges[i][1].isUInt() ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1692 !ranges[i][2].isUInt() ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1693 !ranges[i][3].isUInt())
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1694 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1695 throw OrthancException(ErrorCode_BadFileFormat);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1696 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1697 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1698 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1699 Json::LargestUInt groupFrom = ranges[i][0].asUInt();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1700 Json::LargestUInt groupTo = ranges[i][1].asUInt();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1701 Json::LargestUInt elementFrom = ranges[i][2].asUInt();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1702 Json::LargestUInt elementTo = ranges[i][3].asUInt();
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1703
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1704 if (groupFrom > groupTo ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1705 elementFrom > elementTo ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1706 groupTo > 0xffffu ||
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1707 elementTo > 0xffffu)
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1708 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1709 throw OrthancException(ErrorCode_BadFileFormat);
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1710 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1711 else
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1712 {
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1713 removedRanges_.push_back(DicomTagRange(groupFrom, groupTo, elementFrom, elementTo));
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1714 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1715 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1716 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1717 }
2e850edf03d6 Full support for the anonymization of subsequences containing tags whose VR is UI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1718 }
4687
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1719
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1720 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1721 if (serialized.isMember(KEEP_SEQUENCES))
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1722 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1723 const Json::Value& keep = serialized[KEEP_SEQUENCES];
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1724
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1725 if (keep.type() != Json::arrayValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1726 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1727 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1728 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1729 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1730 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1731 for (Json::Value::ArrayIndex i = 0; i < keep.size(); i++)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1732 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1733 if (keep[i].type() != Json::stringValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1734 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1735 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1736 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1737 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1738 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1739 keepSequences_.push_back(DicomPath::Parse(keep[i].asString()));
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1740 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1741 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1742 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1743 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1744
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1745 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1746 if (serialized.isMember(REMOVE_SEQUENCES))
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1747 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1748 const Json::Value& remove = serialized[REMOVE_SEQUENCES];
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1749
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1750 if (remove.type() != Json::arrayValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1751 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1752 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1753 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1754 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1755 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1756 for (Json::Value::ArrayIndex i = 0; i < remove.size(); i++)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1757 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1758 if (remove[i].type() != Json::stringValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1759 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1760 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1761 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1762 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1763 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1764 removeSequences_.push_back(DicomPath::Parse(remove[i].asString()));
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1765 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1766 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1767 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1768 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1769
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1770 // New in Orthanc 1.9.4
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1771 if (serialized.isMember(SEQUENCE_REPLACEMENTS))
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1772 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1773 const Json::Value& replace = serialized[SEQUENCE_REPLACEMENTS];
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1774
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1775 if (replace.type() != Json::objectValue)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1776 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1777 throw OrthancException(ErrorCode_BadFileFormat);
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1778 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1779 else
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1780 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1781 Json::Value::Members members = replace.getMemberNames();
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1782 for (size_t i = 0; i < members.size(); i++)
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1783 {
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1784 sequenceReplacements_.push_back(
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1785 new SequenceReplacement(DicomPath::Parse(members[i]), replace[members[i]]));
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1786 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1787 }
fcd2dc7c8f31 "Replace", "Keep" and "Remove" in "/modify" and "/anonymize" accept paths to subsequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4685
diff changeset
1788 }
2616
2f3007bf0708 event queues in Lua, serialization of sequence of operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2535
diff changeset
1789 }
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1790
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1791
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1792 void DicomModification::SetPrivateCreator(const std::string &privateCreator)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1793 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1794 privateCreator_ = privateCreator;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1795 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1796
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1797 const std::string &DicomModification::GetPrivateCreator() const
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1798 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1799 return privateCreator_;
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4273
diff changeset
1800 }
4685
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1801
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1802
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1803 void DicomModification::Keep(const DicomPath& path)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1804 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1805 if (path.GetPrefixLength() == 0)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1806 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1807 Keep(path.GetFinalTag());
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1808 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1809
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1810 keepSequences_.push_back(path);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1811 MarkNotOrthancAnonymization();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1812 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1813
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1814
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1815 void DicomModification::Remove(const DicomPath& path)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1816 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1817 if (path.GetPrefixLength() == 0)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1818 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1819 Remove(path.GetFinalTag());
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1820 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1821 else
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1822 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1823 removeSequences_.push_back(path);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1824 MarkNotOrthancAnonymization();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1825 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1826 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1827
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1828
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1829 void DicomModification::Replace(const DicomPath& path,
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1830 const Json::Value& value,
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1831 bool safeForAnonymization)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1832 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1833 if (path.GetPrefixLength() == 0)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1834 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1835 Replace(path.GetFinalTag(), value, safeForAnonymization);
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1836 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1837 else
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1838 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1839 sequenceReplacements_.push_back(new SequenceReplacement(path, value));
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1840
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1841 if (!safeForAnonymization)
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1842 {
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1843 MarkNotOrthancAnonymization();
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1844 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1845 }
693f049729ba New versions of Keep(), Remove() and Replace() in DicomModification that use DicomPath
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4684
diff changeset
1846 }
4789
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1847
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1848
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1849 bool DicomModification::IsAlteredTag(const DicomTag& tag) const
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1850 {
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1851 return (uids_.find(tag) != uids_.end() ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1852 IsCleared(tag) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1853 IsRemoved(tag) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1854 IsReplaced(tag) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1855 (tag.IsPrivate() &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1856 ArePrivateTagsRemoved() &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1857 privateTagsToKeep_.find(tag) == privateTagsToKeep_.end()) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1858 (isAnonymization_ && (
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1859 tag == DICOM_TAG_PATIENT_NAME ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1860 tag == DICOM_TAG_PATIENT_ID)) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1861 (tag == DICOM_TAG_STUDY_INSTANCE_UID &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1862 !keepStudyInstanceUid_) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1863 (tag == DICOM_TAG_SERIES_INSTANCE_UID &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1864 !keepSeriesInstanceUid_) ||
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1865 (tag == DICOM_TAG_SOP_INSTANCE_UID &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1866 !keepSopInstanceUid_));
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4737
diff changeset
1867 }
5137
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
1868
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
1869 void DicomModification::GetReplacedTags(std::set<DicomTag>& target) const
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
1870 {
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
1871 target.clear();
5158
02cfd23a556a CppCheck
Alain Mazy <am@osimis.io>
parents: 5141
diff changeset
1872 for (Replacements::const_iterator it = replacements_.begin(); it != replacements_.end(); ++it)
5137
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
1873 {
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
1874 target.insert(it->first);
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
1875 }
15109c3f0f7d added sanity checks in DicomModificationJob + automatically reconstruct resources at the end of a DicomModificationJob
Alain Mazy <am@osimis.io>
parents: 5132
diff changeset
1876 }
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1877 }